ppp1r3da (ppp1r3d,LOC104919428,LOC100701819)


Basic Information

Item Value
gene id ppp1r3da
gene name ppp1r3d,LOC104919428,LOC100701819
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24719775 ~ 24721848 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801006.1
CTGATAACTGCGCACATATTAGCTGATCTCCATCGAAGGCActatacagacatacagacatatctATGTTTAAGAGATACAAAGCTGGGTCACCAGTTACAGATCAGGTTAAGTGATTGCGACGAAAAGCGGAGACCATGACGAACAGAAACGCGCAGCTCTATAACGTTACTTGAAATGGAGGGTCCAACTTAGGCTACACCCTGCAGCTATACCGCGAATATGTTAATATCGTGAGCTGAGCAGGACACCAACTCTCACAGAACATGGATAGAGGGTGGTTTATTGGACATGAGAGGATTCCCCCTTTGAAGGAGACATCCAGCTCTTACAGCAGTATCTCAAGGCCCTGCATGACCATCAACCTGACTGAAATGCTTCAAGCTGAAAAACCTAGTGCAGTAAAGAAGCCAGTTCCAATCCGCCCCCCAAGCCCCAGAGTCTCTCTGCCAAGGGAGTTCCACCACAGTCTCTCCTGTGAACCCACGCCTAAACCCATCATCCGACAACGGTCACGCTCTCTGCCTTCCGCCACAGAGAAAAAGAAGCAATGCAGAAATGTTGGTGTGCGGTTTGTTGACTCTTTGGGGCTCGACCTGGAAGACATCAAACTTTTTAAATCTGCAGAGGATCCATTTGTACCACATCATGTTACCTTCAGATTGTTGATGGGTGCAGAGTTGGCAGATGGAAGGCATCTGGAGATTTCCTTGCCATACTTGAAACCGGTTTTTGCCCAACAACCTGGAGACCAGCAAGGATTCCTGCATCGCCTCAATGAGCAGAAAGTATGTCTGGAGAGAGTATTGTGTTTTGAACTGGGTGTCATCGGAATCACCCAGGTCCTCAATTTGAACTTTGAGAAGGATGTTATAGCTCGCTATTCATTTACAGAGTGGAAGAACTGCACAGAAACTAAGGCCTCTTGGGTGTCCACCATCACCAAGACCTGCGAAGGAGGAGGGGGCAAACTCAGTTGTGATACATTTCGTTTCCACCTGCCTGTTCCTCCCTTTTTGCAGCCAGGAGCAGTGTTGCAGTTTGCTATTCAATACAAAGTATGTGGGGCTGAATACTGGGACAACAATAATGGAGAGAATTATAAGTTAGTTTGCCATAACTACAAGCTCACTGTGCCCAAAGAATGTGAGGATAGCATGGTGCACTTCATTTAGGATACTGACTAAAGTTAGAAGCAATCTATTTACACTTGTGCACTTCATGACTGTTGTCAGCAAGACTTAATGCATAACACTGCACTGTGACATATAATGTTAATATTGTTAGACTTACAGAAGATTTCTTTGAATCAAGTTGGATTCAAGATAAACTGTCAACTCTGGCGGACTGAGAGAGAGTGAACACAAACACTAATGCACTTCTACCTGATGTCAACTTGCCACAGTGCCACTGTTTtacttttgtgttctttttttaaaatggcaCTCTATGATTTGATTTTCCTGGCTATTCAAAAAAATGGAAGTGACCCCCATTGACCGTTAAATAAATATTCAGTGAAATTGAAATGAATGCATGTCAGTCCACCGTTTTCTTCAAGCTGGGTATCTGACATACATTTATAGTTTTATACAATTAAGTATTTTTATCTGTATTCAGAGTTTATTTTTTGAGCCAAATGTTGTCACAACAAATGCCAAAACCATGCAATACTGTAATACAATTTAATTGAATCAGAAATTAATGCATATTTTGTTTAACAATAAAGCACAATTCCACATAA

Function

symbol description
ppp1r3d Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of glycogen biosynthetic process. Predicted to be located in glycogen granule and intracellular membrane-bounded organelle. Predicted to be part of protein phosphatase type 1 complex.

NR:

description
protein phosphatase 1 regulatory subunit 3D-like

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801006.1 True 1744 mRNA 0.42 2 24719775 24721848

Neighbor

gene id symbol gene type direction distance location
ttll9 ttll9 coding upstream 4142 24710783 ~ 24715633 (+)
cntn3a.1 NA coding upstream 88780 24559407 ~ 24630995 (+)
LOC120559012 NA coding upstream 222624 24442888 ~ 24497151 (+)
dffa dffa coding upstream 385708 24325261 ~ 24334067 (+)
casz1 casz1 coding upstream 465988 24204375 ~ 24253787 (+)
sycp2 NA coding downstream 441 24722289 ~ 24750342 (+)
pigt pigt,LOC102793327 coding downstream 64115 24785963 ~ 24793102 (+)
LOC120559115 LOC104919424,LOC101480694 coding downstream 116736 24838584 ~ 24919766 (+)
alas2 alas2,LOC108236847,LOC106524166 coding downstream 269046 24990894 ~ 24999555 (+)
znf362b LOC104920215,LOC103353008 coding downstream 300777 25022625 ~ 25034515 (+)
G52817 NA non-coding upstream 13869 24705538 ~ 24705906 (+)
G52756 NA non-coding upstream 329648 24387153 ~ 24390127 (+)
G52742 NA non-coding upstream 357508 24360806 ~ 24362267 (+)
G52728 NA non-coding upstream 445739 24270121 ~ 24274036 (+)
LOC120558580 NA non-coding upstream 645767 24061063 ~ 24074008 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding downstream 30047 24751895 ~ 24753180 (+)
G52892 NA non-coding downstream 237968 24959816 ~ 24960103 (+)
LOC120558677 NA non-coding downstream 288141 25009989 ~ 25015398 (+)
G53056 NA non-coding downstream 1087865 25809713 ~ 25811047 (+)
LOC120559215 NA non-coding downstream 1273385 25995233 ~ 25997094 (+)
ctnnbip1 ctnnbip1 other upstream 905369 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 954610 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 1651296 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 1872837 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 2157254 22562154 ~ 22562521 (+)
LOC120559118 LOC102791662 other downstream 218947 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 231594 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 1021741 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 1349737 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 1630612 26352460 ~ 26353463 (+)

Expression


Co-expression Network