LOC120559361


Basic Information

Item Value
gene id LOC120559361
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 36557530 ~ 36559959 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801025.1
CATTTCTCCGCTGGCTTCCTCAAAGTGGTAAAAGATGGGCAACTCAGAGGAGGAAATGTTCTACCAATTAGATTACGACTACAACGACACTGATTTAGACTACCTGATTGAAGCACCTTGTTCATACCAGAACACGCACAGCGTTGAGCTGGTGGTCATACCGTATGTCCACATCATCATCTGCATCCTGGGCTTCGTAGGGAACAGCCTGGTGATCGTCACTTATGCCTTCTACAAGAGTACCAAGTCCATGACGGACGTCTACCTGCTGAACGTGGCCATCGCAGACCTGCTGTTCGTGGTGTCGCTGCCTCTTATCGTCTACAACGAGCTGTCGGCGTGGCCGATGGGGCCGGTGGCCTGCAAGCTCCTGCGCGGCTCCTACAGCGTGAACCTGTACAGCGGCATGCTGCTGCTCGCCTGCATCAGCGCCGACCGGTACATCGCCATCGTCCAGGCCCGCCGCAGCTTCAGACTGCGCTCGCTGGTGTACAGCCGCCTCATCTGCGCTGTCGTCTGGGCCTCCGCCTTACTGCTGTCCGTCCCAACCTTCTACTTCTACAGCTGGTACCAGCCGTCCTACAGCATGGACGCCTTcatagaagaggaggagagaaatcAGACCTCCGGGCCTACACAGTACATCTGCGAGTTCAGGTTCACAGACGAAACCACAGCGTTGAATACCAAGATGGCGGTCCCCAGCACCCAGCTGGCCGTGGGCTTCTTCCTGCCGCTGCTTGTCATGGTCTGCTGCTACACCGCAGTCATCGTCACCCTGCGTAAAGCCAGAAACTTCCAGCGGCACAAGGCGATGCGAGTGGTGCTGGCCGTGGTGGCGGTTTTCATCGTCTGCCACCTGCCCTACAACGTCACGCTGCTCTACGACACCGCCAACATGTTCGAGCTGCAGTCGTGCCAAGAGTCGGACATCCTGCAGGCGGCCAAGACAGTGACGAAGACCATCGCCTACCTGCACTGCTGCCTGAACCCGGTGTTGTACGCCTTCGTCGGGGTGAAGTTCAGGAACCACTTCAGGAGGATCTTCCAGGACCTGTGGTGTCTGGGGAAGAGCTACAGCGCCCCGCCGCTCGGTGAACCGATCCAGCAAAAAAACTGCTCGTCTTTCACCATGTGAGGACACCTGGCAGGTTCATGTGTTGACTAGAAACTTCCCTCCTTGGACCAAATATCCAGAAACTTTCCTCGTAGACCCAAAGGTCCAGAAACTTCCCTCCTAGATCCAAAAATCCTGAAAGTTCCCTCTTAGACCCAAAGATCCAGAAAGTTCCCTCCTAGACCCAAAGATCCAGAAACTTTCCTCCTAGACCCAAAGATCCAGAAACTTTCCTCCTAGACCCAAAGATCCTGAAagtttcctccttcctcctagACCCAAAGATTCAGAAAATTCCCTCCTAGACCAAACAATCCTGAAAGTTCTCTCCTGGATCCTGAAAGTTTCCTCTTAGACCCAACAATCTCTGCAGATCTCTGGAGGTCCAAACCtgctctatctctctttcagttaaggggtcctggggttaaaaaacattgaagacccctgatttaGAGACTTTATTTTGGTTTCTGGTCAAAATTCTTCAGCCCCGAACATGAAGCTGTTTTATCTGCTGCGACTCTTCAGAAGCTTTTCTGTTTAAACCGAATCAGAAGATTTTCAGTATTAAAAACTGGTCGGCTTTAGATTTGCCAAATGTCAAATCAAATGTCAGATGAACTCTCTGTAACCTCCAGTAATGACTGTTAAGATTTTATTCTTCTGATGTTTCTTTTTGACCTTGCTTTAGACTTAGTTTCCTGTCATATTTAAGTTATATCCGtttattttttgtaacattGAAAGCACAGTAGAGAAACTGATGAATGTAATATTGTTTA
>XR_005639240.1
AGCTGTCGACATATGATCACTGCCTCGCATTTCTCCGCTGGCTTCCTCAAAGAAATCATCACTGCACAGTTTGATGTTCTCTCTCTGATCTGTGGACATTTACAGTGGTAAAAGATGGGCAAC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0034453 microtubule anchoring biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0016493 C-C chemokine receptor activity molecular_function

KEGG:

id description
K04181 CCR6, CD196; C-C chemokine receptor type 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801025.1 True 1902 mRNA 0.50 2 36557530 36559932
XR_005639240.1 False 123 transcript 0.46 2 36559389 36559959

Neighbor

gene id symbol gene type direction distance location
plch2a plch2,LOC106935153 coding downstream 109738 36272871 ~ 36447792 (-)
LOC120559648 LOC103362257,LOC106633114,LOC101486280 coding downstream 287505 36253176 ~ 36270025 (-)
flna LOC100702302 coding downstream 1173301 35311194 ~ 35384229 (-)
emd NA coding downstream 1253515 35298496 ~ 35304015 (-)
mrpl49 NA coding downstream 1270320 35286360 ~ 35287210 (-)
igf3 LOC108228312 coding upstream 21564 36581523 ~ 36588712 (-)
si:dkeyp-110g5.4 NA coding upstream 39614 36599573 ~ 36606768 (-)
lrif1 NA coding upstream 50178 36610137 ~ 36625969 (-)
stk35 LOC105921027,LOC108249422 coding upstream 220342 36780301 ~ 36804670 (-)
gmeb2 gmeb2,LOC102776727 coding upstream 290891 36850850 ~ 36866302 (-)
G55670 NA non-coding downstream 5643 36544954 ~ 36551887 (-)
G55666 NA non-coding downstream 14895 36540534 ~ 36542635 (-)
G55658 NA non-coding downstream 45872 36511359 ~ 36511658 (-)
G55602 NA non-coding downstream 472664 36084517 ~ 36084866 (-)
G55599 NA non-coding downstream 474197 36083086 ~ 36083333 (-)
G55664 NA non-coding upstream 33279 36593238 ~ 36595825 (-)
G55662 NA non-coding upstream 34266 36594225 ~ 36598272 (-)
G56162 NA non-coding upstream 54618 36614577 ~ 36615851 (-)
G56167 NA non-coding upstream 97930 36657889 ~ 36699601 (-)
G56155 NA non-coding upstream 123681 36683640 ~ 36712643 (-)
si:ch73-70k4.1 NA other downstream 658794 35874622 ~ 35898736 (-)
G55492 NA other downstream 1147764 35404604 ~ 35409766 (-)
LOC120559165 NA other downstream 1279676 35269896 ~ 35277854 (-)
ntsr1 ntsr1,LOC103361890,LOC104959625 other downstream 2266461 34236566 ~ 34291069 (-)
G55124 fam110a,LOC104960682 other downstream 2430035 34024018 ~ 34127495 (-)
G56160 NA other upstream 121940 36681899 ~ 36724209 (-)
LOC120559655 mtch1,LOC102799640 other upstream 163279 36723238 ~ 36744132 (-)
rhoaa LOC106529366,LOC107558917,LOC102777028,LOC107687289,LOC103367639,LOC107599000,LOC103384870,LOC106572042 other upstream 324844 36884803 ~ 36895540 (-)
phc2a LOC103367632,LOC102778931,LOC100708466,LOC102197996 other upstream 424926 36984885 ~ 37001151 (-)
G56335 NA other upstream 812676 37372635 ~ 37373316 (-)

Expression


Co-expression Network