ppardb (ppard)


Basic Information

Item Value
gene id ppardb
gene name ppard
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22517239 ~ 22524940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801190.1
tggcaTGTGACGacgatggaggaggaggagagcaaagcaaagcaaagctAGGAACAACAAGGAGAGCCGGGGAGGGATTAGCAGTTCACTATGCTTATCTGCATGTGATATGTTAGCGACCGAAtgtgtccaaacgttttttcttttctcttgagCTCAGCGATTTGTCAGCTACTTGAAGCCTTAGTCACTTAAAGTTTATGTTAGTAGCAGCAGTCTGACGTTAGCCCCTGCTGCTAGCTAACTCCTGCTGGTGACTTCTAACAACTTGTCAACAGCCGATCGATACTGGACAGGACTTGGGACTGTTTTCTCTACCTGTTTTTTGGCCTATTGGCAATTTCTCGTAGCGTAAACATCTTCTAAACCAGCAGCACTATTGGGAGAGTAGAACTATGATGACAACGTGACAGGAGGGGAGCCGCTGAGTCAGCTTAAATAGAAACCATGGAAGGTACAGAGCAGCACGACAGGGTGAACGGCCACTGCAAGCCCAAATCCCCCCAGGAGACGGCTGTTGTCAGGTGGACGTCTCCCGAGGGAGAGTCTGGAGGTTCAGACAGCTGTGGAGGGACTAGTGTGTCGGAGCTGACAGACCTGCAAGAGTTAAAGGCCATGGAaagtgatgaggaggaggacaaggagaaggagaaggaggtagtTCCACCCTCCAAAGGCCTAAAAGTGgaacagaagaaaaaagagaaagagagtctGGATCACAAGGAGAACAATCGCAGCAAGCAAAACAGCAGTGCAGCATCCAGCTATACAGACCTGTCGCATACCTCGTCGCCCTCGCTGTCAGAACAGCTGCGTCTTGGCCGAGAAGACAGCACAGGGGCTGGGATCAGCGTAGAGTGTAAAGTCTGCGGGGACAAGGCCTCTGGCTTTCACTATGGCGTGCATGCCTGTGAGGGTTGCAAGGGATTTTTCAGGCGAACCGTGCGGATGAAACTGGAATATGATCGCTGTGAGCGCTCCTGCAAGATTCAGAAGAAGAATCGTAACAAGTGCCAATATTGTCGCTTCCAGAAGTGCCTGTCTTTGGGAATGTCCCATGATGcgATCCGATATGGACGTATGCCCGAGGCGGAGAGGAAGAAGCTGGTGGCAGGCCTGCTTGCAGAAGAAGTGAATCTCAGCAAACCAGGCGGCTCAGACCTGAAGACCTTGGCCAAACAAGTTAACACAGCCTACCTGAAGAACTTCAGTATGACCAAGAAGAGGTCCCGCAGCATCTTGTCGGGCAAAACCAGCAGCACCTCACCGTTCGTGATTTACGATATGGACACACTCTGGGAGGCAGAAAGTGGTTTGGTATGGAGCCAGTTAGTTCCAGGTGCGCCCCTGACCAAAGAGATTGGGGTCCATGTGTTCTACCGCTGCCAGTGCACCACGGTGGAGACTGTGCGAGAGCTCACAGAGTTTGCCAAGAGCATTCCAGGGTTTGTGGACCTCTACCTAAATGACCAGGTGACTTTACTGAAGTATGGTGTGCACGAGGCTATTTTTGCCATGCTGCCCTCTCTCATGAACAAAGATGGACTGTTGGTGGCCAATGGAAAAGGCTTTGTGACCAGGGAGTTCCTTCGCAGCTTAAGAAAGCCCTTCAGTGAGATCATGGAGCCCAAGTTTGAGTTTGCTGTCAAGTTTAATGCTCTGGAGCTGGATGACAGCGACCTGGCCCTGTTTGTTGCTGCCATTATTCTCTGTGGAGATCGTCCTGGACTAATGAACGTGAAGCAGGTGGAGCAGAGTCAGGACAACATCCTCCAGGCCCTGGACCTCCACCTACAGGCAAACCACTCTGACTCAGCCTACCTCTTCCCCAAGCTGCTGCAGAAGATGGCCGACCTCCGTCAGCTAGTTACTGAGAACGTTCAGCTTGTCCAAAAGATCAAAAAGACTGAGTCAGAGACTTCGCTCCACCCTCTACTACAGGAGATCTATAAAGACATGTATTAGAATTATCCAGCACAGACTGCTTTTAGCAATACTGTTACAGACATCGATGATACTACACTGCATTCAATACAAGCACTGTTGCGAGTACGGACATGGATTTTAAGGTGCAGATGAGGCAAAGACACGTGTTAGGGCTAACACAATCAGCAAAGTCTTCTCAATGTCAGCATTACCCTCGGcacaataatgtgtgtgtgttatgtgtgtgtgatgagcaTCTGGAATCATTTGCTGCAAGTCCTAGTTTCCCACAACGGTCACTTAACAGAGAGAATTATTTGATTTCTCACCAAGGCTGCTCCTGTTACATTACTGTCTTGTTACATTTGAATAGCAAAGCTGACCCCAGAACAGCgtctagagagagagagcttctCCTCACTCACCTCggctctgtgtttgtctgtgaagGGAAAGCATTTCATGTTCTTACACCAATGGCATTGTTGAAATAGAAATGAGCTGTAAAGTTTGTACTGTGCAAGAGATACGTTAGATGCCAATGTCTTTGGTAGAGTGATTGTTCTCAGACTTTTGGTAAAGATGAAGATGCACAAATTGGCTTTTATTTACATCATCATCTACAACATCCGCAATGACCGCTACTCTGCCATTTGGTTAATAGAACACAAACTGGGCTGGCTCCAGCATTGTAGAGCTCTCTTAACGCAGCAGTCTGTGCAATACCGTTTCCATTTTTCAATAAATGTGGAGATCCAAGTTCTATAGGTTTTGTCTTAAAGCCATGTACCCAAGTGGTAACTAATGGACTATGCTGCACAGATTTTGTCCCTAAACTGACACTATAAACACATTACCCATTGAAGTACAAGGGACAGcattttttgtttctctttttttgacatgcaaaTGATCATGAATTTGCcattttaagttgtttttttttcttagtttattctttgtaattatgttactaattatttgtatttgttgatCATATTTGTAAGGCAAAACATGAATTATCttgttttatgtattattcAGTATGTGTCCTTTCATATTACATGCTTGCCTATTTAGTTTAGGTTGTACCAAATATATTGTCAAGCATACCAACAAATGTTTCCTTGATGAGGAATTTGGCAGCACACTACCACAATGTCGTTGGGAAAATTGATGATTAGAAATCAACATCCAGCATCTGGTGTCATAAAACGCTTCTGTATTCACACGATATACAAGATATAACCACAGTCCTAGATTACTACCCTTTCTGTGTACAGTCTGATTTGGCTTGTAAGGAGAGCCACACAGTGTAAAAACCTTTACAATACTGTAGCCAGGATTCATAAGTTTCAAACTGTTTTTCTTCCCCTCATATTCTGtaggacttctttttttttactgtacttCATCTGAATGGACTTCAGTATGTCAGCACTGGTGCACAGAGTCCACCTTCAGAAATCTCCCTTTGTGCTCGTAATCTGTCTCTTGATCCCTAGCTACCTCTAATGTATGATCTGTGACATTATTCCACTGTCTCATCTGATCTctgacatttttttcctttgcCTTAATTCCTGCTATTGCAACACATTGCAAATTTGATATTATTGGCTGATGTGCGTTGTGCCAACAAAACAAGAAAGTACACcaaaaagtt
>XM_039801191.1
tggcaTGTGACGacgatggaggaggaggagagcaaagcaaagcaaagctAGGAACAACAAGGAGAGCCGGGGAGGGATTAGCAGTTCACTATGCTTATCTGCATGTGATATGTTAGCGACCGAAtgtgtccaaacgttttttcttttctcttgagCTCAGCGATTTGTCAGCTACTTGAAGCCTTAGTCACTTAAAGTTTATGTTAGTAGCAGCAGTCTGACGTTAGCCCCTGCTGCTAGCTAACTCCTGCTGGTGACTTCTAACAACTTGTCAACAGCCGATCGATACTGGACAGGACTTGGGACTGTTTTCTCTACCTGTTTTTTGGCCTATTGGCAATTTCTCGTAGCGTAAACATCTTCTAAACCAGCAGCACTATTGGGAGAGAACTATGATGACAACGTGACAGGAGGGGAGCCGCTGAGTCAGCTTAAATAGAAACCATGGAAGGTACAGAGCAGCACGACAGGGTGAACGGCCACTGCAAGCCCAAATCCCCCCAGGAGACGGCTGTTGTCAGGTGGACGTCTCCCGAGGGAGAGTCTGGAGGTTCAGACAGCTGTGGAGGGACTAGTGTGTCGGAGCTGACAGACCTGCAAGAGTTAAAGGCCATGGAaagtgatgaggaggaggacaaggagaaggagaaggaggtagtTCCACCCTCCAAAGGCCTAAAAGTGgaacagaagaaaaaagagaaagagagtctGGATCACAAGGAGAACAATCGCAGCAAGCAAAACAGCAGTGCAGCATCCAGCTATACAGACCTGTCGCATACCTCGTCGCCCTCGCTGTCAGAACAGCTGCGTCTTGGCCGAGAAGACAGCACAGGGGCTGGGATCAGCGTAGAGTGTAAAGTCTGCGGGGACAAGGCCTCTGGCTTTCACTATGGCGTGCATGCCTGTGAGGGTTGCAAGGGATTTTTCAGGCGAACCGTGCGGATGAAACTGGAATATGATCGCTGTGAGCGCTCCTGCAAGATTCAGAAGAAGAATCGTAACAAGTGCCAATATTGTCGCTTCCAGAAGTGCCTGTCTTTGGGAATGTCCCATGATGcgATCCGATATGGACGTATGCCCGAGGCGGAGAGGAAGAAGCTGGTGGCAGGCCTGCTTGCAGAAGAAGTGAATCTCAGCAAACCAGGCGGCTCAGACCTGAAGACCTTGGCCAAACAAGTTAACACAGCCTACCTGAAGAACTTCAGTATGACCAAGAAGAGGTCCCGCAGCATCTTGTCGGGCAAAACCAGCAGCACCTCACCGTTCGTGATTTACGATATGGACACACTCTGGGAGGCAGAAAGTGGTTTGGTATGGAGCCAGTTAGTTCCAGGTGCGCCCCTGACCAAAGAGATTGGGGTCCATGTGTTCTACCGCTGCCAGTGCACCACGGTGGAGACTGTGCGAGAGCTCACAGAGTTTGCCAAGAGCATTCCAGGGTTTGTGGACCTCTACCTAAATGACCAGGTGACTTTACTGAAGTATGGTGTGCACGAGGCTATTTTTGCCATGCTGCCCTCTCTCATGAACAAAGATGGACTGTTGGTGGCCAATGGAAAAGGCTTTGTGACCAGGGAGTTCCTTCGCAGCTTAAGAAAGCCCTTCAGTGAGATCATGGAGCCCAAGTTTGAGTTTGCTGTCAAGTTTAATGCTCTGGAGCTGGATGACAGCGACCTGGCCCTGTTTGTTGCTGCCATTATTCTCTGTGGAGATCGTCCTGGACTAATGAACGTGAAGCAGGTGGAGCAGAGTCAGGACAACATCCTCCAGGCCCTGGACCTCCACCTACAGGCAAACCACTCTGACTCAGCCTACCTCTTCCCCAAGCTGCTGCAGAAGATGGCCGACCTCCGTCAGCTAGTTACTGAGAACGTTCAGCTTGTCCAAAAGATCAAAAAGACTGAGTCAGAGACTTCGCTCCACCCTCTACTACAGGAGATCTATAAAGACATGTATTAGAATTATCCAGCACAGACTGCTTTTAGCAATACTGTTACAGACATCGATGATACTACACTGCATTCAATACAAGCACTGTTGCGAGTACGGACATGGATTTTAAGGTGCAGATGAGGCAAAGACACGTGTTAGGGCTAACACAATCAGCAAAGTCTTCTCAATGTCAGCATTACCCTCGGcacaataatgtgtgtgtgttatgtgtgtgtgatgagcaTCTGGAATCATTTGCTGCAAGTCCTAGTTTCCCACAACGGTCACTTAACAGAGAGAATTATTTGATTTCTCACCAAGGCTGCTCCTGTTACATTACTGTCTTGTTACATTTGAATAGCAAAGCTGACCCCAGAACAGCgtctagagagagagagcttctCCTCACTCACCTCggctctgtgtttgtctgtgaagGGAAAGCATTTCATGTTCTTACACCAATGGCATTGTTGAAATAGAAATGAGCTGTAAAGTTTGTACTGTGCAAGAGATACGTTAGATGCCAATGTCTTTGGTAGAGTGATTGTTCTCAGACTTTTGGTAAAGATGAAGATGCACAAATTGGCTTTTATTTACATCATCATCTACAACATCCGCAATGACCGCTACTCTGCCATTTGGTTAATAGAACACAAACTGGGCTGGCTCCAGCATTGTAGAGCTCTCTTAACGCAGCAGTCTGTGCAATACCGTTTCCATTTTTCAATAAATGTGGAGATCCAAGTTCTATAGGTTTTGTCTTAAAGCCATGTACCCAAGTGGTAACTAATGGACTATGCTGCACAGATTTTGTCCCTAAACTGACACTATAAACACATTACCCATTGAAGTACAAGGGACAGcattttttgtttctctttttttgacatgcaaaTGATCATGAATTTGCcattttaagttgtttttttttcttagtttattctttgtaattatgttactaattatttgtatttgttgatCATATTTGTAAGGCAAAACATGAATTATCttgttttatgtattattcAGTATGTGTCCTTTCATATTACATGCTTGCCTATTTAGTTTAGGTTGTACCAAATATATTGTCAAGCATACCAACAAATGTTTCCTTGATGAGGAATTTGGCAGCACACTACCACAATGTCGTTGGGAAAATTGATGATTAGAAATCAACATCCAGCATCTGGTGTCATAAAACGCTTCTGTATTCACACGATATACAAGATATAACCACAGTCCTAGATTACTACCCTTTCTGTGTACAGTCTGATTTGGCTTGTAAGGAGAGCCACACAGTGTAAAAACCTTTACAATACTGTAGCCAGGATTCATAAGTTTCAAACTGTTTTTCTTCCCCTCATATTCTGtaggacttctttttttttactgtacttCATCTGAATGGACTTCAGTATGTCAGCACTGGTGCACAGAGTCCACCTTCAGAAATCTCCCTTTGTGCTCGTAATCTGTCTCTTGATCCCTAGCTACCTCTAATGTATGATCTGTGACATTATTCCACTGTCTCATCTGATCTctgacatttttttcctttgcCTTAATTCCTGCTATTGCAACACATTGCAAATTTGATATTATTGGCTGATGTGCGTTGTGCCAACAAAACAAGAAAGTACACcaaaaagtt

Function

symbol description
ppard Enables several functions, including linoleic acid binding activity; nuclear receptor activity; and transcription coactivator binding activity. Involved in apoptotic signaling pathway and positive regulation of transcription, DNA-templated. Predicted to be located in chromatin. Implicated in type 2 diabetes mellitus. Biomarker of biliary tract cancer and pancreatic cancer.

NR:

description
peroxisome proliferator-activated receptor delta

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04504 NR1C2, PPARD; peroxisome proliferator-activated receptor delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801190.1 True 3595 mRNA 0.45 8 22517239 22524940
XM_039801191.1 False 3592 mRNA 0.45 8 22517239 22524940

Neighbor

gene id symbol gene type direction distance location
LOC120559492 def6 coding upstream 1693 22501456 ~ 22515546 (+)
LOC120558509 NA coding upstream 120235 22388549 ~ 22397004 (+)
mipa LOC103368323,LOC101065051,LOC100704616 coding upstream 268509 22246955 ~ 22248730 (+)
ptges3a LOC107390842,LOC103368333,LOC104967534,LOC100704884,LOC106525288,LOC108244561,LOC101471106 coding upstream 272476 22240482 ~ 22244763 (+)
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding upstream 303375 22203091 ~ 22213864 (+)
mkrn4 NA coding downstream 357 22525297 ~ 22530706 (+)
fance NA coding downstream 5966 22530906 ~ 22534605 (+)
rpl10a rpl10a,LOC103141192 coding downstream 10557 22535497 ~ 22538153 (+)
LOC120558833 NA coding downstream 13340 22538280 ~ 22545840 (+)
smc5 smc5 coding downstream 41004 22565944 ~ 22581585 (+)
G52185 NA non-coding upstream 33138 22480543 ~ 22484101 (+)
G52179 NA non-coding upstream 40925 22474230 ~ 22476314 (+)
G52054 NA non-coding upstream 170593 22340383 ~ 22346646 (+)
G52064 NA non-coding upstream 262266 22254295 ~ 22254973 (+)
G52060 LOC104967533,LOC103368342 non-coding upstream 280057 22235156 ~ 22237182 (+)
G52272 lhfpl5,LOC102777996 non-coding downstream 105654 22630594 ~ 22631144 (+)
G52287 NA non-coding downstream 200933 22725873 ~ 22726131 (+)
G52288 NA non-coding downstream 201657 22726597 ~ 22729555 (+)
G52294 NA non-coding downstream 225123 22750063 ~ 22762554 (+)
G52333 NA non-coding downstream 309858 22834798 ~ 22847296 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 422349 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 456594 22046763 ~ 22060645 (+)
G51926 NA other upstream 613162 21903542 ~ 21904077 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 709325 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 797116 21717109 ~ 21720123 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 31389 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 37214 22562154 ~ 22562521 (+)
lamtor5 lamtor5,LOC102787529 other downstream 317104 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 466312 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 1221425 23746365 ~ 23765165 (+)

Expression


Co-expression Network