LOC120559492 (def6)


Basic Information

Item Value
gene id LOC120559492
gene name def6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22501456 ~ 22515546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801210.1
AGGGACTTTGCAAGCACTGGAAGCCTACTAACACCTGGCCGCACAGGTGCCCTCCTGCCCATTTCAGAGTTTCCTGGATCCAGGTTCTCAATATTCTGGTTGGAAAGGATGTGagtacttctttcaccactggaAGGCAGGATCAGATCATGTAGTAAACAATCAGACCCTCCCTCTCCATTAGTGACTATGGACGACCTGCAGGTGTCGCTGCCAGCAGGTTGGTAAAGCCTCATGCCTGCCTGACAGCAGCAACACAGTGTGGGTGTCTGCCTGTCACCCAGGGGCCCTGTGTGAACAgcagagggaagaagaagagacGTGGAGGAGGAAACCAGAAAGTAACTTTGCTGCAGACATGGACCTGCGGTCTGAGCTGCTCAAGTCCATCTGGTACGGTTTCACAGCCCTGGATCTGGAGAAGAGCGGTAAAGTGTCCAAGTCTCAGCTGAAGGTGCTGTCCCACAACCTGTGTACAGTCTTGTCTATCCCACATGACCCAGTTGCTTTGGAGGAGCACTTcagggatgatgatgatggtccAGTTTCCAGTCAGGGTTATATGCCTTACCTCAACAAATACATCCTGGACAAGGTTATTGAAGGCTCTTTTATTAAGGAAAACGTAGATGAGCTCTGTTGGACGCTTACAGCAAAGAAAAACTACCAGACGGACAAAACCAGCAGTACTGTTCTGCCAGAGAAGGATGCTTTTCGGCTTTGGTGCCTTTTTAATTTTCTCTCTGAAGACAAGTACCCTTTGGTTATGGTCCCTGACGAGGTGGAGTACCTCCTAAAGAAGATATGTATGGGTATGAGTATTGAGTTCAACTGTGTTGAATTAGAGGACTTCTTCTCCCAAGACTCAGTGCAGCAGAGCGGCATTACTGTTTGGGTTTTTCTGGCGATGATGAACTCGGGAAAGATAACCAGAGGAATTGAAAAGAGCATAATCAGCATGGCTATAGAGGAAGTATACAGGGAGATAGTTGGTGATGTCCTCAAAGAGGGTTATCTGTGGAAGAAAGGCCAGCTGAGGAGAAACTGGAAGGAACGCTGGTTCACCTTAAGGCCGAGCAACTTGTCCTACTACACCGGGGAGGACCGCAAGGACTGCCAGGGCAACATAGTTCTGGACGGGAACTGCTGTGTTGAGGAAGTAGACGATCAAATATTGTTTGGCTCAAAATGGATCAAAAACGTCTTTAACCCTGTGCTACCAGACCGGGATGGGAAGAGGTGCATGTTTTGTCTGAAAACCCTCTCCAAGACTTATGAGATGAGCGCCTCAGACACCAAACAGAGACAGGAGTGGACTACAGCCATTCAAACAGCTATCAGGCTGCATGTGGAGGGCAAAACGTCCCTCCACAAAGATTTGAAGATGAAGCGTCGCGAACAGCGGGAGCAGCGGGAGAAGAGACAGCAGGCCAAGGAGGAGGAGCTGCACAGGCTGCGGGCCCTGCAGGAGGAACGGGAGCGTAAGCTGGCGGAGTTGGATCTTCTGAAGGAGGCGCAAAAGCAGGCTCAGGCCCTCCTGGAGCAGGACGAGCAGAGGAGACGTCAGCAGCATGAACAGCTCCAGCGGGCCCTGGAGGTCCAGCTGCGAGAGGCTGAGGAGGCTCGGGTCAGCATGCAGGCAGAGATGGCTCTAAaagaggaggaggcagagaggcAGAGGAAGAGGATCCAGGAGCTGGAGGAGATGCAGAAGCGTTTAGAGGAGGCGCTGCAGCAGGAGATCAAAGCCAGACGAGATGAGGAGGCCTTCCGCTACGCTCAAGCAGGGTTACtggcagaggaagaggagaaaatgaAGGCCCTGATGAGACTGCAGGAGGAACAGGAGGAGTACATCctgaagacacagagagagaagcaggagcTGAAACAGGAAATGGAGGCCAAGTCCCGGTCTCTGGACGAGGCGCAAAGGCAGCTGGAGGAGGTCCGCGCCAACCGGCACAGGGTTGACCAGGATGTAGTGGCTGCACAGCGGAAACTTCGCCAGGCGAGCACCAATGTCAAACACTGGAACGTCCAGATGAACAGACTGATGCGACCAATCGGACCAGGCGAGAAGAGACCATCGTTGGGAAGCTCCTTCTCAAGCTTCCAGATCCCGACACAGAGAGATCCCGGGCTGCGTCTCAGAAGGAGATCAGGATCAGAGGATCAGGATGAGGAGAGCAAAGAGAATGTTGACACCAGAGCTGGATGTGATTTAGAGAAACGGCACTCCCATGCCTCTAATGGAGACATGGAcatcccctgaaaacgtgaatcagacagacaggctgtgTAGGTCACTTCTGGTCAGGTTTTCTGACAGGAAGGGCAAGAGATGAAAAGAGTGGAACATCTACACTTAAAACTGAATTTACTACCAAAAGTACTACCATTTCTGTTAAATGTTGAATTTACTGACCTCATTTCACAGAAACAGtttaaaacatttgcatttgcagaATCAACTAATGCTTTGACTGCCTGTGTGAGGCCTGTTGTGGACATAAACGATACCTCAGTGCAAAGGAAATGAGCTGTAAGCAAGATCCTGGAAGTACGAAGTAAGTTGTGATGTTTAAAGGCAAATACTTACATACAATGCAAGGGAGCTTATTTGTTTAGCTCTGTAATATAGCCACATAACAATGTTTCATTTTAACATATGTATTTTTGGGGGTGGAGGGTGGCTTGACTTTTTTACATAAAAGTTGGTTAAGTATTAGAGTTTACCGCAATTTTATTGGAAGAGTATCACTCATTATCaacaggaaagagagggagggagagaaactCTCATTGAACTTCCGGTTTCTATTGTCAGTTAACATAACAGTTGTAAATAAAGAGTGAATTAATGCCTGA
>XM_039801211.1
CCCTCCCTCTCCATTAGTGACTATGGACGACCTGCAGGTGTCGCTGCCAGCAGGTTGGTAAAGCCTCATGCCTGCCTGACAGCAGCAACACAGTGTGGGTGTCTGCCTGTCACCCAGGGGCCCTGTGTGAACAgcagagggaagaagaagagacGTGGAGGAGGAAACCAGAAAGTAACTTTGCTGCAGACATGGACCTGCGGTCTGAGCTGCTCAAGTCCATCTGGTACGGTTTCACAGCCCTGGATCTGGAGAAGAGCGGTAAAGTGTCCAAGTCTCAGCTGAAGGTGCTGTCCCACAACCTGTGTACAGTCTTGTCTATCCCACATGACCCAGTTGCTTTGGAGGAGCACTTcagggatgatgatgatggtccAGTTTCCAGTCAGGGTTATATGCCTTACCTCAACAAATACATCCTGGACAAGGTTATTGAAGGCTCTTTTATTAAGGAAAACGTAGATGAGCTCTGTTGGACGCTTACAGCAAAGAAAAACTACCAGACGGACAAAACCAGCAGTACTGTTCTGCCAGAGAAGGATGCTTTTCGGCTTTGGTGCCTTTTTAATTTTCTCTCTGAAGACAAGTACCCTTTGGTTATGGTCCCTGACGAGGTGGAGTACCTCCTAAAGAAGATATGTATGGGTATGAGTATTGAGTTCAACTGTGTTGAATTAGAGGACTTCTTCTCCCAAGACTCAGTGCAGCAGAGCGGCATTACTGTTTGGGTTTTTCTGGCGATGATGAACTCGGGAAAGATAACCAGAGGAATTGAAAAGAGCATAATCAGCATGGCTATAGAGGAAGTATACAGGGAGATAGTTGGTGATGTCCTCAAAGAGGGTTATCTGTGGAAGAAAGGCCAGCTGAGGAGAAACTGGAAGGAACGCTGGTTCACCTTAAGGCCGAGCAACTTGTCCTACTACACCGGGGAGGACCGCAAGGACTGCCAGGGCAACATAGTTCTGGACGGGAACTGCTGTGTTGAGGTGCTACCAGACCGGGATGGGAAGAGGTGCATGTTTTGTCTGAAAACCCTCTCCAAGACTTATGAGATGAGCGCCTCAGACACCAAACAGAGACAGGAGTGGACTACAGCCATTCAAACAGCTATCAGGCTGCATGTGGAGGGCAAAACGTCCCTCCACAAAGATTTGAAGATGAAGCGTCGCGAACAGCGGGAGCAGCGGGAGAAGAGACAGCAGGCCAAGGAGGAGGAGCTGCACAGGCTGCGGGCCCTGCAGGAGGAACGGGAGCGTAAGCTGGCGGAGTTGGATCTTCTGAAGGAGGCGCAAAAGCAGGCTCAGGCCCTCCTGGAGCAGGACGAGCAGAGGAGACGTCAGCAGCATGAACAGCTCCAGCGGGCCCTGGAGGTCCAGCTGCGAGAGGCTGAGGAGGCTCGGGTCAGCATGCAGGCAGAGATGGCTCTAAaagaggaggaggcagagaggcAGAGGAAGAGGATCCAGGAGCTGGAGGAGATGCAGAAGCGTTTAGAGGAGGCGCTGCAGCAGGAGATCAAAGCCAGACGAGATGAGGAGGCCTTCCGCTACGCTCAAGCAGGGTTACtggcagaggaagaggagaaaatgaAGGCCCTGATGAGACTGCAGGAGGAACAGGAGGAGTACATCctgaagacacagagagagaagcaggagcTGAAACAGGAAATGGAGGCCAAGTCCCGGTCTCTGGACGAGGCGCAAAGGCAGCTGGAGGAGGTCCGCGCCAACCGGCACAGGGTTGACCAGGATGTAGTGGCTGCACAGCGGAAACTTCGCCAGGCGAGCACCAATGTCAAACACTGGAACGTCCAGATGAACAGACTGATGCGACCAATCGGACCAGGCGAGAAGAGACCATCGTTGGGAAGCTCCTTCTCAAGCTTCCAGATCCCGACACAGAGAGATCCCGGGCTGCGTCTCAGAAGGAGATCAGGATCAGAGGATCAGGATGAGGAGAGCAAAGAGAATGTTGACACCAGAGCTGGATGTGATTTAGAGAAACGGCACTCCCATGCCTCTAATGGAGACATGGAcatcccctga

Function

symbol description
def6 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: differentially expressed in FDCP 6 homolog isoform X1

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG:

id description
K20072 SWAP70; switch-associated protein 70

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801210.1 True 2871 mRNA 0.49 13 22501456 22515546
XM_039801211.1 False 2051 mRNA 0.53 11 22504225 22514950

Neighbor

gene id symbol gene type direction distance location
LOC120558509 NA coding upstream 104452 22388549 ~ 22397004 (+)
mipa LOC103368323,LOC101065051,LOC100704616 coding upstream 252726 22246955 ~ 22248730 (+)
ptges3a LOC107390842,LOC103368333,LOC104967534,LOC100704884,LOC106525288,LOC108244561,LOC101471106 coding upstream 256693 22240482 ~ 22244763 (+)
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding upstream 287592 22203091 ~ 22213864 (+)
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding upstream 302346 22184296 ~ 22199110 (+)
ppardb ppard coding downstream 1693 22517239 ~ 22524940 (+)
mkrn4 NA coding downstream 9751 22525297 ~ 22530706 (+)
fance NA coding downstream 15360 22530906 ~ 22534605 (+)
rpl10a rpl10a,LOC103141192 coding downstream 19951 22535497 ~ 22538153 (+)
LOC120558833 NA coding downstream 22734 22538280 ~ 22545840 (+)
G52185 NA non-coding upstream 17355 22480543 ~ 22484101 (+)
G52179 NA non-coding upstream 25142 22474230 ~ 22476314 (+)
G52054 NA non-coding upstream 154810 22340383 ~ 22346646 (+)
G52064 NA non-coding upstream 246483 22254295 ~ 22254973 (+)
G52060 LOC104967533,LOC103368342 non-coding upstream 264274 22235156 ~ 22237182 (+)
G52272 lhfpl5,LOC102777996 non-coding downstream 115048 22630594 ~ 22631144 (+)
G52287 NA non-coding downstream 210327 22725873 ~ 22726131 (+)
G52288 NA non-coding downstream 211051 22726597 ~ 22729555 (+)
G52294 NA non-coding downstream 234517 22750063 ~ 22762554 (+)
G52333 NA non-coding downstream 319252 22834798 ~ 22847296 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 406566 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 440811 22046763 ~ 22060645 (+)
G51926 NA other upstream 597379 21903542 ~ 21904077 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 693542 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 781333 21717109 ~ 21720123 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 40783 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 46608 22562154 ~ 22562521 (+)
lamtor5 lamtor5,LOC102787529 other downstream 326498 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 475706 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 1230819 23746365 ~ 23765165 (+)

Expression


Co-expression Network