rer1 (rer1)


Basic Information

Item Value
gene id rer1
gene name rer1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25794731 ~ 25806161 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801246.1
GGGGCTCTACTATCCTTCCTGCCATCAACTCGAATCCTCGCGGAAGTACTGACGTGTTCACACCAGTTTGCACGAGAAGTGGctagtgtagctagctaggtagAGCCGGGTAGTGACACAGCGGCCGTATCAGAATGTCAGAAGGGGACAGTGTTGGGGAGTCAATCCATGGGAAATCATCTGTAGTGGCTGCCTTTTTCACACGGATTGGACAGgtctATCAGTCATGGCTAGACAAGTCAACACCATTCTATGCAGTGCGATGGGCAAGCACTCTACTACTTACTGCTGTCTACATGATCAGAGTGTACATACTACAGGGTTGGTATATAGTAACATATGCTTTGGGAATCTACCATCTCAACCTGTTCATTGCTTTTCTATCGCCAAAAGTGGATCCTTCACTGCTTGATGAAGATGAGGGCCCATCCCTTCCTACCAAGCAGAACGAGGAGTTCCGCCCTTTCATCAGGAGGTTGCCTGAATTCAAATTCTGGCATTCGGCGACAAAAGGCATCGTCATCGCCATGATTTGCACATTTTTTGAAGCCTTCAATGTGCCAGTGTTCTGGCCTATACTTGTAATGTACTTCATCATGCTCTTCTGCATCACCATGAAGAGGCAGATCAAGCATATGGTCAAGTACAGATACCTACCCTTCACACATGGGAAGAGAACATACAAAGGCAAGGACGACACAGGGAAAACTTTTGCTAGTTAAAATCTCCCACTTCCCCTTCCCCTCCTCGTTTTAAATTAATCGGTCACAGCTAGTGGGGAATGACAAGGGTCAgagatttattttctttttgtaagCTGGAAAGTAACatgaaaacataacataaaaaatacaacTTTTGATCCATGGTCAGTGTTGAGGATATGAGCAGCGTGGATCAAATAAGTCTATTAAGGGttaggatttttttgtttttgttttgaggaCCCCGATCCTCATTTTAGGATTGGTCTGCATTTGTTCAGTAGTTTGGAGACTAAGTGCTGCCTTTTGCCTTTTTAACCCCATGGGGTAAGTATAAAGTCACCAAGAAAGATCCACACTGAAAAAAAgttgctgtgaaatttgtgatttttgtttgtttattttttcaatgaTGGTGATTCCAGTACATCTCCTTCTCCcaagttaaataaatctgcCAATTTTTGATTAATATATTGGCACCTACTTTTTTGTAACAAGTTAAATATTGAAAGTCAGTAGTGTAAAAATAACAACATGATTAGATGTGTAAGATGAAATCTGAAAGAAAACGCAACGGTCTCCGAGTTGagtcatttcattttttgtgaTAAAAGTGTGCGACTGCTCTGGCTCACAAGTGTCTCAGGCAGTTGGCCTTTGTACTAAATGCAGACACTGTGAAATTAGTCGTATTTCACTTGAATATGCATTCATGACGGACAGAAAAATGGCTATAAAATTGAATCTCTTAAAATAATTGACACTCTGcagaaatattttttatttatcttgaaTTGGCAACTAATGCAATTCTGTGTATTACCCGATTCTCACTAGCATAGCCAGTGGAGCAAGCATCAATATGAATGATTAACAGTGAATTTTCAGCTATCAACCACATCATTCAATGCATAATTCAAAGAGAGCGTCCCTAATCCCAACCTATTTAGTCTCCTGTAGCTTGTAGTCTACCTTTTGAATCAGTTCTTTTTACTTTTGCGCCTTTGTAGAGTTTAACAGATGGGATACTTTGTCGTTAAGCAACCCTATAAACCAAATTATTTAGCATTATTTAGGGGGCATTGAAATGGCAAGTCAAtgaatttattttatgttgGTTCTTTTACACCATGATGTGCATAATTCTAAATATACTTGTCTTCAAATGCACAGCCAGTAATCAAGTCCAATTCATAACGAGGTCTAATCTGAAATAATAGTCATGCAATTACACGTTTATCCCGATGACCCCGATTTTCTCTTTGAAACATTTACCCATCTGGGTTTCAAAGCCTGGGGTCCATTCGATTTATGTAGACTAGCTGTTGTTATAATCTGTTTACTTTGAAAAACATTATGATAAATATAGTCATTCCAAGCAAACTTTTGTTCTCTTTCTTTTGCAGAGGACACATAAGAAAACAGAGATTGAGAGCTTTTATTATAACAAATGGATGAAGTGGGTGGTGATCGTAACTTTCTTTTCTataaacctgtttttttttttttctccatttttatcAGACTGCTGGGTATTATCTGTCATTACTAAACTTTGATCAGCACTGTAAGGGATCAATACATTTTCCTGTAAAAAGTTTGTTTCAAAGGGTTGTCTGGAGgatttgtatgtgtatatatatatattttaaaatatgaaattttttttgagattatttttatttttttcttccaaccACCATACTGTTTCCAAGTGTTTAAATCCATTTCAGTTGAAATTGATGAAAGCAGAACTGGTTAATTGGGTTCTAGATTTGATGAATTAAATGTTTCTCATGGATTGCATGTTATTGTTTTCTTGTGCTAcagttataaaacaaaaacttgaTTTTATTAACTTAAGTGTAATTTTTTTCACTCCAAATGCTATTAAAGAGGCTGTGTCCCTTCAAACAGTG
>XM_039801247.1
GGGGCTCTACTATCCTTCCTGCCATCAACTCGAATCCTCGCGGAAGTACTGACGTGTTCACACCAGTTTGCACGAGAAGTGGctagtgtagctagctaggtagAGCCGGGTAGTGACACAGCGGCCGTATCAGAATGTCAGAAGGGGACAGTGTTGGGGAGTCAATCCATGGGAAATCATCTGTAGTGGCTGCCTTTTTCACACGGATTGGACAGgtctATCAGTCATGGCTAGACAAGTCAACACCATTCTATGCAGTGCGATGGGCAAGCACTCTACTACTTACTGCTGTCTACATGATCAGAGTGTACATACTACAGGGTTGGTATATAGTAACATATGCTTTGGGAATCTACCATCTCAACCTGTTCATTGCTTTTCTATCGCCAAAAGTGGATCCTTCACTGCTTGATGAAGATGAGGGCCCATCCCTTCCTACCAAGCAGAACGAGGAGTTCCGCCCTTTCATCAGGAGGTTGCCTGAATTCAAATTCTGGCATTCGGCGACAAAAGGCATCGTCATCGCCATGATTTGCACATTTTTTGAAGCCTTCAATGTGCCAGTGTTCTGGCCTATACTTGTAATGTACTTCATCATGCTCTTCTGCATCACCATGAAGAGGCAGATCAAGCATATGGTCAAGTACAGATACCTACCCTTCACACATGGGAAGAGAACATACAAAGAGGACACATAAGAAAACAGAGATTGAGAGCTTTTATTATAACAAATGGATGAAGTGGGTGGTGATCGTAACTTTCTTTTCTataaacctgtttttttttttttctccatttttatcAGACTGCTGGGTATTATCTGTCATTACTAAACTTTGATCAGCACTGTAAGGGATCAATACATTTTCCTGTAAAAAGTTTGTTTCAAAGGGTTGTCTGGAGgatttgtatgtgtatatatatatattttaaaatatgaaattttttttgagattatttttatttttttcttccaaccACCATACTGTTTCCAAGTGTTTAAATCCATTTCAGTTGAAATTGATGAAAGCAGAACTGGTTAATTGGGTTCTAGATTTGATGAATTAAATGTTTCTCATGGATTGCATGTTATTGTTTTCTTGTGCTAcagttataaaacaaaaacttgaTTTTATTAACTTAAGTGTAATTTTTTTCACTCCAAATGCTATTAAAGAGGCTGTGTCCCTTCAAACAGTG

Function

symbol description
rer1 Acts upstream of or within cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in Kupffer's vesicle; lateral line; olfactory pit; otic vesicle; and pronephros. Orthologous to human RER1 (retention in endoplasmic reticulum sorting receptor 1).

NR:

description
protein RER1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801246.1 True 2626 mRNA 0.37 7 25794731 25806161
XM_039801247.1 False 1200 mRNA 0.40 8 25794731 25806161

Neighbor

gene id symbol gene type direction distance location
tp73 tp73,LOC102784606 coding upstream 1506 25765160 ~ 25793225 (+)
prdm16 prdm16,LOC102785463 coding upstream 80341 25532101 ~ 25714390 (+)
LOC120558819 NA coding upstream 350891 25440361 ~ 25443840 (+)
tmem51a NA coding upstream 368794 25422882 ~ 25425937 (+)
LOC120558932 NA coding upstream 379978 25409728 ~ 25414753 (+)
LOC120559463 NA coding downstream 9195 25815356 ~ 25819330 (+)
LOC120559218 NA coding downstream 17607 25823768 ~ 25829902 (+)
LOC120559220 NA coding downstream 28385 25834546 ~ 25840432 (+)
LOC120559217 LOC103362599 coding downstream 47573 25853734 ~ 25857881 (+)
her3 NA coding downstream 60602 25866763 ~ 25867978 (+)
LOC120558677 NA non-coding upstream 779333 25009989 ~ 25015398 (+)
G52892 NA non-coding upstream 834628 24959816 ~ 24960103 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 1041551 24751895 ~ 24753180 (+)
G52817 NA non-coding upstream 1088825 24705538 ~ 24705906 (+)
G52756 NA non-coding upstream 1404604 24387153 ~ 24390127 (+)
G53056 NA non-coding downstream 3552 25809713 ~ 25811047 (+)
LOC120559215 NA non-coding downstream 189072 25995233 ~ 25997094 (+)
G53109 NA non-coding downstream 290198 26096359 ~ 26099635 (+)
G53221 NA non-coding downstream 519060 26325221 ~ 26325468 (+)
G53222 NA non-coding downstream 519758 26325919 ~ 26329616 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 46410 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 837401 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 849411 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 1980325 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 2029566 23746365 ~ 23765165 (+)
G53096 ybx1 other downstream 265424 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 546299 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 572031 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 636889 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 677371 26483532 ~ 26537351 (+)

Expression


Co-expression Network