LOC120559530 (LOC104964419,LOC104927136)


Basic Information

Item Value
gene id LOC120559530
gene name LOC104964419,LOC104927136
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22826631 ~ 22828548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801272.1
CGAAAAGTGTGGGGAAAAAGTGCTGAGCCTCAGTGAGCATTACACTGAAGATGAAGTTTTCCTTTGTCTTGTTTCTTTTATTAGATATTCCTCATCTAAAAGGGCAGCAGAGGATCGAGGAGTTTGAACACGTCCTGCTGAGACTGGCCTTCCCTTCCGTTTACAACAGTTACAACAAGTCTTGCTGTAAACTCTATCCAGGAGGATGCTACAAGCTGCTGGACAGTGCAGGATTTACCTGTGATTTACTGAAAGGAAGAGTGACGAAAACTGAGAGAGACGGCTGGAtagaatttaaaatattaaatgtgcGGTTTGAGGACGGAGGATATTACAGATGTATTGTGCTAGGAACTCAAAACCTAATCTACAGTGATTACTATGTTGAGGTGTCTGAAGTTTCAGGTCACCACAGCCAATCTCAGCCTTCACTGACGACAACCATCAAAGCCCCCAACACCTCCACAATACTCCCAGACTCCACTGGGCCTGCTCTGGCACAGGACCACAGTGACAGTTCCAGAGTTCCCTGGAGTTTTGGCCTGCCACTAGCTGTCATTGTGTCAATTACGGTGATGATTTTGATCACTTCAGTCATTGGTGTTGTTTGCTGCAGAGTCCAGACAAAACGTAAACTGCCGGACAAATGTGGAGAAACTCTGTGTGAGTCACTGAAACAAGACGCCCCGGAAATGAGCGCCATAGTCTACACAACGGTGGACTTCAGAGCTCACCAGAAACCGACAGAGGTGTACGCAAACCTGAGGATGCACAAAACACAAGCGGGAGCCCCTGACTCGACCTGGCGCGCAGAGCATGATGGGATGGTGGAGTACTCCACATTGGCCATCCACCAATCAATACCTGTGAACGTTTAGTTAGTTTTTGATTTTAATGGGGCAGAATATATTTGTTCCGACACTTTCTAAAATGAACTTTATTTTACACATAAATGTCAGTTTGCGAGTCATGCTTAGTGCCACTCAGcctgtgtagagtttgaaaGACATTCACCAGGCAGGGATGATCTAACAAAAACATCCATttggttgcattatgggaaatgtaggatacagcatttttggagcttgactaaaaatcatcatcatctgctGATTTGGTTTGAACTAATCTTTTGTCTGTTGGGAGTCccccaactttatggaagtgcaatatgtaatactgaacTACCGCTTTAAGTGTATATAGCATGTGTTGTTTGAGAAAATggtaaatgacataaaatgaaatgataacGCATTAAAGAAATGAACA
>XM_039801273.1
CGAAAAGTGTGGGGAAAAAGTGCTGAGCCTCAGTGAGCATTACACTGAAGATGAAGTTTTCCTTTGTCTTGTTTCTTTTATTAGATATTCCTCATCTAAAAGGGCAGCAGAGGATCGAGGAGTTTGAACACGTCCTGCTGAGACTGGCCTTCCCTTCCGTTTACAACAGTTACAACAAGTCTTGCTGTAAACTCTATCCAGGAGGATGCTACAAGCTGCTGGACAGTGCAGGATTTACCTGTGATTTACTGAAAGGAAGAGTGACGAAAACTGAGAGAGACGGCTGGAtagaatttaaaatattaaatgtgcGGTTTGAGGACGGAGGATATTACAGATGTATTGTGCTAGGAACTCAAAACCTAATCTACAGTGATTACTATGTTGAGGTGTCTGAAGTTTCAGGTCACCACAGCCAATCTCAGCCTTCACTGACGACAACCATCAAAGCCCCCAACACCTCCACAATACTCCCAGACTCCACTGGGCCTGCTCTGGCACAGGACCACAGTGACAGTTCCAGAGTTCCCTGGAGTTTTGGCCTGCCACTAGCTGTCATTGTGTCAATTACGGTGATGATTTTGATCACTTCAGTCATTGGTGTTGTTTGCTGCAGAGTCCAGACAAAACGTAAACTGCCGGACAAATGTGGAGAAACTCTGTGTGAGTCACTGAAACAAGACGCCCCGAACACTGTCTCTTGACATAGTGAGTCTCCCGCAGGAAATGAGCGCCATAGTCTACACAACGGTGGACTTCAGAGCTCACCAGAAACCGACAGAGGTGTACGCAAACCTGAGGATGCACAAAACACAAGCGGGAGCCCCTGACTCGACCTGGCGCGCAGAGCATGATGGGATGGTGGAGTACTCCACATTGGCCATCCACCAATCAATACCTGTGAACGTTTAGTTAGTTTTTGATTTTAATGGGGCAGAATATATTTGTTCCGACACTTTCTAAAATGAACTTTATTTTACACATAAATGTCAGTTTGCGAGTCATGCTTAGTGCCACTCAGcctgtgtagagtttgaaaGACATTCACCAGGCAGGGATGATCTAACAAAAACATCCATttggttgcattatgggaaatgtaggatacagcatttttggagcttgactaaaaatcatcatcatctgctGATTTGGTTTGAACTAATCTTTTGTCTGTTGGGAGTCccccaactttatggaagtgcaatatgtaatactgaacTACCGCTTTAAGTGTATATAGCATGTGTTGTTTGAGAAAATggtaaatgacataaaatgaaatgataacGCATTAAAGAAATGAACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104927136 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801272.1 False 1275 mRNA 0.43 6 22826631 22828548
XM_039801273.1 True 1309 mRNA 0.44 6 22826631 22828548

Neighbor

gene id symbol gene type direction distance location
LOC120559125 NA coding upstream 2988 22811870 ~ 22823643 (+)
mmp9 mmp9 coding upstream 15160 22806923 ~ 22811471 (+)
adora1b adora1,LOC103368126,LOC101166301,LOC102200284,LOC101484151 coding upstream 30649 22791665 ~ 22795982 (+)
cpne5a NA coding upstream 101039 22653501 ~ 22725592 (+)
srpk1a srpk1 coding upstream 199472 22611970 ~ 22627159 (+)
slc16a4 slc16a4,LOC102787232 coding downstream 19437 22847985 ~ 22877262 (+)
slc6a17 slc6a17,LOC104944562 coding downstream 91226 22919774 ~ 22942875 (+)
ngrn NA coding downstream 202748 23031296 ~ 23033104 (+)
sypl2b LOC104926818,LOC104942234,LOC103367903 coding downstream 228501 23057049 ~ 23061335 (+)
gpr61 LOC104942230,LOC103367872,LOC101482146,LOC102303595,LOC100709777 coding downstream 271005 23099553 ~ 23104095 (+)
G52294 NA non-coding upstream 64077 22750063 ~ 22762554 (+)
G52288 NA non-coding upstream 97076 22726597 ~ 22729555 (+)
G52287 NA non-coding upstream 100500 22725873 ~ 22726131 (+)
G52272 lhfpl5,LOC102777996 non-coding upstream 195487 22630594 ~ 22631144 (+)
G52185 NA non-coding upstream 342530 22480543 ~ 22484101 (+)
G52333 NA non-coding downstream 6250 22834798 ~ 22847296 (+)
G52342 rbm15 non-coding downstream 55501 22884049 ~ 22888687 (+)
G52379 ahcyl1,LOC104942237 non-coding downstream 180629 23009177 ~ 23020008 (+)
G52364 nfya non-coding downstream 192258 23020806 ~ 23023328 (+)
G52403 atp5f1 non-coding downstream 312362 23140910 ~ 23192988 (+)
LOC120559933 NA other upstream 264110 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 266303 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 731741 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 765986 22046763 ~ 22060645 (+)
G51926 NA other upstream 922554 21903542 ~ 21904077 (+)
lamtor5 lamtor5,LOC102787529 other downstream 13496 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 162704 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 917817 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 962899 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 2112247 24940795 ~ 24945320 (+)

Expression


Co-expression Network