pgd (pgd)


Basic Information

Item Value
gene id pgd
gene name pgd
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23994946 ~ 24001436 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801310.1
TCGTCACGTCGAGAAGAGAACGAGGAAGTAAAATAAATAGGAAAGTGAAGTGGTGTGAGAGCTGAGAGCCCGACTGTCATTCGAACACTGATACTCCACGGCTACTTTACCCGCTGAGCACCATGGCTGAAGCAGACATTGCACTGATTGGTTTGGCTGTCATGGGCCAAAACCTTATCATGAACATGAACGACCATGGCTTCGTGGTCTGTGCTTACAACCGGACCGTGTCCAAGGTGCATGACTTCCTGAAGAATGAGGCGAAGGGCTCCAAGGTGATTGGCGCAGAGTCTCTGGAGGACATGGTGTCCAAGCTGAAGAAGCCCAGGAGGATCATCCTGCTGGTCAAGGCTGGACAGGCTGTGGATGACTTCATCGACAAACTGGTTCCTCTTCTTGAGGCTGGGGATATCATCATCGACGGTGGCAACTCTGAATACAGAGACACAACACGGCGGTGTAAGAGCCTGAAAGAGAAGGGCTTGCTGTTTGTCGGCAGCGGAGTCAGTGGTGGAGAGGAAGGGGCCCGTTATGGACCCTCACTCATGCCGGGAGGACATAAAGAGGCCTGGCCACACATTAAAGACATCTTCCAAAGCATCGCTGCCAAGGTTGGAACAGGAGAACCTTGTTGTGACTGGGTTGGAGATGAGGGTGCAGGTCATTTTGTGAAAATGGTCCATAATGGCATTGAGTATGGCGACATGCAGCTGATTTGTGAAGCCTATCACCTGATGAAGGACGTTCTGGTTATGGACCACGATGAGATGGCACAGGTTTTCGACAACTGGAACAAGACAGAGTTAGATTCCTTCCTGATCGAGATCACGGCTaacatctttaaatacagggaCTCTGATGGTACACATCTGTTGCCCAAGATCCGTGACAGTGCTGGACAGAAAGGCACAGGGAAGTGGACGGCCATTTCAGCCCTGGAGTACGGCACACCTGTGACTCTGATCGGGGAGGCTGTCTTTGCCAGATGCCTGTCCTCTCTAAAGGATGAGAGAGTGGAGGCCAGCCGCAGCCtttcagggccacagggggtcaAATTCAGCGGTGACAAGGCTGCCTTCCTGGAGGACATCAGAAAGGCCCTCTACGCCTCCAAGATCATTTCCTACGCGCAGGGCTTCATGCTGCTGCGGCAGGCAGCCAAAGAGTTCGGCTGGTCACTCAACTACGGCGGGATCGCTCTGATGTGGAGAGGAGGCTGCATCATCCGAAGCGTCTTCCTGGGTAAAATCAAAGAGGCGTTTGACGGAGACGCTGAGCTACAGAACCTGCTGCTGGACCCGTTCTTTAGTAATGCTGTGCAGGACTGTCAGGAGTCATGGCGCAGAGCAGTCAGCACTGGAGTCCAGCATGGCATCCCGATGCCTTGTTTCACCACAGCTCTGTCCTTCTATGATGGTTACAGACATGAAAAGCTGCCAGCCAATCTCCTTCAggCTCAGAGGGACTACTTTGGAGCCCACACATATGAGCTGCTGTCCAACCCCGGTCAATTCGTCCACACCAACTGGACCGGCCACGGTGGAAATGTCTCCTCTTCGTCCTACAATGCTTAAGGATCATCTTCACATCACTCAAAAAACGAAAACAAGATGGAAGGACGAGGGGAAGTTATCTGTGAGAGAAGAATACATGTTACACATTCCATCTTTATAACCATGCCTGAATATTTAAGAGCCAGCCCCCCCTCTTCAAAGAATCGCCTTAATCTGATGTTGTACTCCTCAAAGATGCAGTTTATTGTTGCAGTTTTATTTATCAAGAAGTGGAATCATAAATTATGTGTGTCGTACACTCTACactctgtgtgttttggtgCAGCTACGTTTTGAATATTATGCAGGCTGTCAAGCTAATGTTCACCAGTCATGTTTGGCCCAGGGTTCACGGTGTTAACATTGGATTAAGGTGAACCACTGCACAGTACTGTATTAGGCTAAATAAAGATTTCAATCCCTTTATAA

Function

symbol description
pgd Predicted to enable NADP binding activity and phosphogluconate dehydrogenase (decarboxylating) activity. Predicted to be involved in D-gluconate catabolic process and pentose-phosphate shunt, oxidative branch. Predicted to act upstream of or within D-gluconate metabolic process and pentose-phosphate shunt. Predicted to be active in cytosol. Is expressed in several structures, including axis; chordo neural hinge; digestive system; sensory system; and solid lens vesicle. Orthologous to human PGD (phosphogluconate dehydrogenase).

NR:

description
6-phosphogluconate dehydrogenase, decarboxylating

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0050661 NADP binding molecular_function
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity molecular_function

KEGG:

id description
K00033 PGD, gnd, gntZ; 6-phosphogluconate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801310.1 True 1982 mRNA 0.50 13 23994946 24001436

Neighbor

gene id symbol gene type direction distance location
kif1b kif1b coding upstream 1254 23928466 ~ 23993692 (+)
ube4b ube4b coding upstream 67480 23906900 ~ 23927466 (+)
rbp7a rbp7 coding upstream 89128 23903965 ~ 23905818 (+)
nmnat1 nmnat1 coding upstream 90907 23894213 ~ 23904039 (+)
clstn1 clstn1 coding upstream 103973 23849614 ~ 23890973 (+)
c5h1orf127 LOC104954118 coding downstream 12453 24013889 ~ 24020924 (+)
casz1 casz1 coding downstream 202939 24204375 ~ 24253787 (+)
dffa dffa coding downstream 323825 24325261 ~ 24334067 (+)
LOC120559012 NA coding downstream 441452 24442888 ~ 24497151 (+)
cntn3a.1 NA coding downstream 557971 24559407 ~ 24630995 (+)
G52611 NA non-coding upstream 156984 23837692 ~ 23837962 (+)
G52604 NA non-coding upstream 204424 23789448 ~ 23790522 (+)
G52569 NA non-coding upstream 307585 23686352 ~ 23687361 (+)
G52509 NA non-coding upstream 547389 23447353 ~ 23447557 (+)
LOC120558323 NA non-coding upstream 719751 23265231 ~ 23275195 (+)
G52628 tardbp,LOC106566965 non-coding downstream 8360 24009796 ~ 24011101 (+)
G52629 NA non-coding downstream 11527 24012963 ~ 24013301 (+)
LOC120558580 NA non-coding downstream 59627 24061063 ~ 24074008 (+)
G52728 NA non-coding downstream 268685 24270121 ~ 24274036 (+)
G52742 NA non-coding downstream 359370 24360806 ~ 24362267 (+)
ctnnbip1 ctnnbip1 other upstream 180540 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 229781 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 926467 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 1148008 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 1432425 22562154 ~ 22562521 (+)
LOC120559118 LOC102791662 other downstream 939359 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 952006 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 1742153 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 2070149 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 2351024 26352460 ~ 26353463 (+)

Expression


Co-expression Network