sars1 (sars)


Basic Information

Item Value
gene id sars1
gene name sars
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 32910758 ~ 32933014 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801314.1
ATGGTGCTCGACCTGGACCAGTTTCGCACCGACAAAGGTGGCGATCCAGAAATCATCCGTGAGACACAAAGGAAGAGGTTTAAAGATGTAACCCTCGTCGATAAACTGGTCGCCGCAGATACAGAGTGGAGAAAATGCCGCTTCACTGCAGACAACCTGAACAAAGCTAAGAACCTTTGCAGCAAGAGCATTGGAGAGAGAATGAAGAGGAAGGAACCAGTTGGGGAGGATGAGTCTCTACCTGAGGAAGCACAGAACGTGGAGTCCCTAACAGCTGAAACCCTAGCGCCCCTGACGGTAACCCAGATCAAGAAGGTGCGTTTGTTAGTGGACGAGGCGGTGGAGAAATGTGACAGTGAGAGGATAAAGCTGGAGGCGGAGCGCTTCGAGTACCTGAGGGAGATCGGCAACCTCCTGCACCCATCCGTACCCATCAGCAATGACGAGGATGCAGACAACAAGGTGGAGCGTACCTGGGGCGACTGCAGCGTCCAGAAGAAGTACTCCCATGTGGATTTGGTGGTCATGATCGACGGCTTCGATGGAGAGAGGGGCGCTGTTGTGGCTGGGAGCAGAGGTTACTTTCTGAAGGGGCCGCTGGTGTTCCTGGAGCAGGCTCTGATCACTTACGCCTTAAGGATCCTGCACAGCAAGAACTACACCATGCTCTACACACCCTTCTTCATGAGGAAAGAGGTCATGCAGGAAGTCGCCCAGCTCAGCCAGTTTGACGAAGAGCTTTACAAGGTCATCGGTAAGAGCAGCGAGAAGTCGGACGACAACTCCATAGACGAGAAGTACCTCATCGCCACCTCGGAGCAGCCCATCGCAGCCTTCCTGAGGGACGAGTGGCTCAAACCCGAGGACCTGCCCATCCGCTACGCCGGCTTTTCCACCTGCTTCAGACAGGAAGTGGGCTCCCATGGCCGAGACACCCGCGGGATCTTCAGGGTGCACCAGTTTGAGAAGATTGAGCAGTTCATCTATGCCTCCCCACATGACGGCAAGTCTTGGGAGATGTTTGATGAGATGATCGGGACGGCAGAAGAGTTCTACCAGTCGCTTGGAATTCCCTATCGCATCGTCAACATCGTCTCTGGTGCCCTAAATCACGCGGCCAGTAAGAAGCTGGATCTGGAGGCCTGGTTCCCTGGCTCTGGGGCCTTCAGAGAGCTGGTCTCCTGCTCAAACTGCACCGACTACCAGGCCAGGCGCCTCCGCATCCGCTACGGACAGACCAAGAAGATGATGGACAAGgctgAGTTTGTGCACATGTTGAACGCAACCATGTGTGCCACCACGCGTGTGATGTGTGCCATCCTGGAGAATTACCAAACTGAGGAAGGCATCGTTATTCCAGAGATGCTCAGGCCGTTCATGCCTCCTGGTTTGACAGAGATCATTAAGTTCGTCAAGCCCGCTCCTATCGATCAGGAGATGTCGAAGAAAGCAAAGAAACAGCAGGATGGAggggggaagaagaagaagcagggaggaggaggagaccagAACCTGCCCAACGCCATGGAGACCATGTCCGTCAACGACTCCTAGGACTGCAGCACACGATGACTGTGTCGCCACACCAACCGCGCAGATAGACGCTGATGGAATAGAgtcttgtgtgtatttgttgccGTTGGAAAATGGGGAACGTGTTATTAATCTTATCCATTAAAATGAAGAGTAGCTCTATCGCATCTTTGTCCATCTGAATGGGTGGTGGTGTTCATCTCAGCTGTTCCTCCCCTCATTCATTCACATAAAGCACACTG

Function

symbol description
sars Predicted to enable several functions, including nucleic acid binding activity; protein homodimerization activity; and serine-tRNA ligase activity. Predicted to be involved in negative regulation of angiogenesis; negative regulation of macromolecule metabolic process; and seryl-tRNA aminoacylation. Predicted to act upstream of or within translation. Located in mitochondrion. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; egg cylinder; and genitourinary system. Human ortholog(s) of this gene implicated in intellectual disability. Orthologous to human SARS1 (seryl-tRNA synthetase 1).

NR:

description
PREDICTED: serine--tRNA ligase, cytoplasmic

GO:

id name namespace
GO:0006434 seryl-tRNA aminoacylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004828 serine-tRNA ligase activity molecular_function

KEGG:

id description
K01875 SARS, serS; seryl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801314.1 True 1775 mRNA 0.54 11 32910758 32933014

Neighbor

gene id symbol gene type direction distance location
tmem106c tmem106c,LOC108233084 coding downstream 7045 32892265 ~ 32903713 (-)
krt8 LOC104959359,LOC106525573,LOC108233108,LOC107391340,LOC107088570,LOC100702817,LOC103152763 coding downstream 184131 32720833 ~ 32726627 (-)
LOC120558593 LOC106915442,LOC106565226,LOC103152765,LOC106947658 coding downstream 216316 32688887 ~ 32694442 (-)
si:ch211-220i18.4 LOC103373814,LOC108233036,LOC102211047,LOC100693975,LOC102782987,LOC102291816 coding downstream 323795 32570308 ~ 32586963 (-)
cpne9 cpne9,LOC100694516,LOC101469997,LOC102776939 coding downstream 399693 32413064 ~ 32511065 (-)
si:ch211-207e14.4 NA coding upstream 1453 32934467 ~ 32949982 (-)
fam50a fam50a coding upstream 17091 32950105 ~ 32965764 (-)
arhgap4b LOC103371877,LOC102798993,LOC102215860 coding upstream 39581 32972595 ~ 33014849 (-)
zgc:103759 LOC104952901,LOC101466673,LOC100706292,LOC102192048 coding upstream 83475 33016489 ~ 33021344 (-)
pim1 pim1,LOC102786254,LOC100704168,LOC102192917 coding upstream 135871 33068885 ~ 33073078 (-)
G54735 NA non-coding downstream 222120 32688205 ~ 32688638 (-)
G54734 NA non-coding downstream 224144 32683360 ~ 32686614 (-)
G54733 NA non-coding downstream 228242 32682162 ~ 32682516 (-)
G54731 NA non-coding downstream 235293 32675265 ~ 32675465 (-)
G54724 NA non-coding downstream 313265 32596572 ~ 32597493 (-)
LOC120558525 NA non-coding upstream 240852 33173866 ~ 33183318 (-)
LOC120558313 NA non-coding upstream 375117 33308131 ~ 33308924 (-)
G54922 NA non-coding upstream 385806 33318820 ~ 33319024 (-)
G54947 NA non-coding upstream 571799 33504813 ~ 33507223 (-)
G54949 NA non-coding upstream 574420 33507434 ~ 33508423 (-)
G54834 NA other downstream 23468 32880193 ~ 32887290 (-)
G54756 LOC107088573,LOC106566972 other downstream 137272 32767357 ~ 32773486 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other downstream 244299 32590983 ~ 32666459 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other downstream 587483 32292942 ~ 32323275 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 2838059 29971196 ~ 30072699 (-)
zgc:158296 NA other upstream 33621 32966635 ~ 32971163 (-)
lamb2 NA other upstream 622786 33555800 ~ 33614940 (-)
G55124 fam110a,LOC104960682 other upstream 1091004 34024018 ~ 34127495 (-)
G55131 NA other upstream 1154956 34087970 ~ 34093118 (-)
ntsr1 ntsr1,LOC103361890,LOC104959625 other upstream 1303552 34236566 ~ 34291069 (-)

Expression


Co-expression Network