LOC120559568 (srsf6,LOC103156038,LOC103362762,LOC103468026,LOC106952897)


Basic Information

Item Value
gene id LOC120559568
gene name srsf6,LOC103156038,LOC103362762,LOC103468026,LOC106952897
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26553859 ~ 26558935 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801392.1
TCGCTCACAGTGCTAACGGCAGACAGCTGGCCCCAGCTTGGTAACAACTCGAGCCGTCGCGAAGAACAGTCGAGAAATCATGCCTCGTGTGTATATTGGACGACTGAGCTATCATGTCCGCGAAAAAGACATCCAACGATTTTTCAGCGGATATGGAAAGCTCATGGAAATCGATTTGAAAAATGGGTATGGATTCGTGGAGTTCGAGGATAACCGGGACGCAGACGATGCCGTGTACGAGCTCAACGGAAAGGAGCTGTGTGGGGAGCGGGTGATCGTCGAACATGCCCGGGGCCCGCGGCGAGACCGAGATGGCCATAGTGGGGGTTACGGGGGTGGTGGGCGCAgtaGCGGTTACAGCAGCCGGAGCCGTTCTGGCAGGGATAAGTATGGACCTCCAGTCCGTACTGAGTACCGTCTAATCGTGGAGAACTTGTCCAGCCGCTGCAGTTGGCAGGACCTCAAGGACTTCATGCGTCAGGCAGGAGAGGTGACCTATGCAGATGCCCACAAGGAACGCACAAATGAGGGTGTGATTGAGTTTCGATCCCACTCAGACATGAAGAGGGCCATCGACAAGCTGGACGGTACAGACATCAACGGACGGAAGATTCGTCTGGTGGAGGACAAGCCTCGCAAACGAAGGTCTTACTCTGGCAGCCGCTCGAGATCTCGTAGTCACCGCCGCTCCCGCAGTAGGAGCCGCAGAAGCAGGAGCTCCAGGAGTCGCTCCAGATCCCACTCCAGGTCTCGTTCCCATAGCAACAAAAGACGTCGCCACTCCCGCTCCAGATCTGGAAGGAAGTCTCGCTCCAAGTCAGGAGAAAGCAAATCACGATCTCGCAACCGCAGGTCCCGTTCGCATTCCCGCAAATCTAAATCTCGTTCACGCTCCCACAAATCCCAGTCCCGTTCAGCCGACCGGAAATCGAAATCCCGCTCAAAGAGTCATTCAAAGGTAAAGTCGGAGCGGGAATCTCGCAGTAGATCCAAGGATATGTCTGGTCACAAGAAGTCCCGCAGTCGTTCAGCCTCCCCCATGGAGAACGGGGTAGGAGAGCGTGTCGCCAAATCTCCTTGCCGCTCCCCATCCCCACACGAAGAAGACCGGCGATCAAAGTCCAGGGAGAAACGTTCAGCCTCCCGCTCGAAGTCCCGCTCAAGGTCTCGCTCACGGTCTAGGTCAGCGTCTCAGAATTAGAGAAATCTGAAAAAAGGAGGCATTGTTGAGCTTGATCCCTATGCTGTACATAATGAGCAGTGTTGTCATACTGGCTTATGCTTCCTTGCTTGTTTACTTTTTCTCAAAGTGTGCACTTGTCTTAAAGGTGTTGAAGATGCAGTTTTATTAGAGGATGCACCGCGGTGAGGGCTACCTATTGGAATAATTTTGGTCACTGAATCGTcgactccaaaaaaaaaaatcacatcttctcctttttttttcttttttttttttttttaattttcaaaaactgAAGTGCTAGTCTTAAAATCTTTAGACCTGCAACCTGAGATGGTTCAAGTCAGTGTCCCAAATAATTAAACTTGATTGGTAAACTGTAGGTTTGTCACACCAACCAATCAAAAAACTAATGAATCAAAAACTGTTGCTTAGCGAAAGTTGAGTTGTCAATTTTATTAATGCATTTCAGTTTGCAACAGATCTTATTTGGTTGGTAGGTAAATACAATTTACTAGCATTGTTTAGTGTCCCTAGTCCATATATGTCTGGAGCGTCCCTCAACCACTGGTTGatgcaactgtttttttttttttttttttcatgttcatTGAAACTGCATGGTTGTGGGAGAAAAATAGCATTTGGCTACAGTCTTGGGGTGGTTTCCCCTTTATTTTGAACTGCAGTCTCAATTGTTTTCTAAAGGAATAGGCCAATCTTAATGTCTTGCGGCACTCTAAAATGCACAACTGGGATGCAAGAACTTGAACtgcatattttcaaaaaaaagggTTTGTATTTCACGTTTGACCTTTCATTGTAGGTGGACTATTATGATCCCTTTTTAACCTCTTGTACATAGACCGTGTGATTAGCATTGAACTGATTTCTTCCTTTTTGTTGCCATCGATATTTGGGTTTTTTGTAACCTTGAGCAGGTAAATTGTGGAAGACACTTTTTACTTTCTATATTTCGGTTTACCTAGAGCTTCGAGGCCTCAAATACAATGTCCTGTTTTTCTCGCCTTTGCCGATTCGTTCTGATTGCCCCCTCCCCTCGAGTCATTTTCAGTTTGtatttcatctctttttttctttttcttttttctgcaaGTTTAATACAAGGGTTAAGGGTTTTGTCAAGCCTATGCTTGCACTGGAGTTTTTGTACTTGCAAGGTACATTGTTAAAATCTCTGGAGGGTCTGCTTGTAGGTTCATAACGACCGccatcagactgactgactgaatgcaccccctctctccatcttgtggaacacattttttttttctctccatgctAACAAGATCTAACAGAAAATTgtcctttttttattgtatgttcAATTAAAGATCTTAATGAAAAAATA

Function

symbol description
srsf6 Enables pre-mRNA binding activity. Involved in several processes, including mRNA splicing, via spliceosome; negative regulation of keratinocyte differentiation; and negative regulation of mRNA splicing, via spliceosome. Acts upstream of or within negative regulation of cell death; positive regulation of epithelial cell proliferation involved in lung morphogenesis; and regulation of alternative mRNA splicing, via spliceosome. Located in nuclear speck. Implicated in proliferative diabetic retinopathy and spermatogenic failure 3. Biomarker of Huntington's disease; clear cell renal cell carcinoma; colon adenocarcinoma; lung cancer; and skin cancer.

NR:

description
PREDICTED: serine/arginine-rich splicing factor 4

GO: NA

KEGG:

id description
K12893 SRSF4_5_6, SFRS4_5_6; serine/arginine-rich splicing factor 4/5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801392.1 True 2555 mRNA 0.46 6 26553859 26558935

Neighbor

gene id symbol gene type direction distance location
eif2s2 eif2s2 coding upstream 743 26547156 ~ 26553116 (+)
LOC120559781 chmp4b,LOC103362760,LOC106511320 coding upstream 7549 26539900 ~ 26546310 (+)
bpifcl NA coding upstream 118395 26428478 ~ 26435464 (+)
LOC120559752 slc32a1,LOC103362770,LOC104926430,LOC101482923,LOC102798107,LOC102295106 coding upstream 126107 26424113 ~ 26427752 (+)
LOC120559112 shmt2,LOC103362774,LOC102296343,LOC102798994 coding upstream 160126 26383591 ~ 26393733 (+)
l3mbtl1 LOC100690549,LOC102290764,LOC101478974 coding downstream 326 26559261 ~ 26577079 (+)
sgk2a sgk2 coding downstream 21743 26580678 ~ 26594851 (+)
mybl2a NA coding downstream 39560 26598495 ~ 26607748 (+)
nsun5 nsun5 coding downstream 49213 26608148 ~ 26614261 (+)
LOC120559326 LOC103362754,LOC107086658,LOC103156032,LOC105936371,LOC106952892,LOC100689745 coding downstream 55446 26614381 ~ 26621119 (+)
LOC120559830 NA non-coding upstream 130800 26414885 ~ 26423059 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding upstream 151431 26397199 ~ 26402428 (+)
G53239 NA non-coding upstream 189022 26364442 ~ 26364837 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding upstream 223231 26330084 ~ 26330628 (+)
G53222 NA non-coding upstream 224243 26325919 ~ 26329616 (+)
G53285 NA non-coding downstream 68361 26627296 ~ 26631607 (+)
G53418 NA non-coding downstream 261726 26820661 ~ 26823621 (+)
G53445 NA non-coding downstream 430894 26989829 ~ 26993682 (+)
G53455 LOC108233118,LOC101063193,LOC101159349,LOC103384990,LOC104941321,LOC103359395 non-coding downstream 579196 27138131 ~ 27207789 (+)
G53461 NA non-coding downstream 598535 27157470 ~ 27159414 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other upstream 16508 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other upstream 29971 26490442 ~ 26523888 (+)
atp5f1e NA other upstream 108969 26443050 ~ 26444890 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other upstream 170812 26378192 ~ 26383047 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other upstream 200396 26352460 ~ 26353463 (+)
G53305 NA other downstream 241161 26800096 ~ 26800746 (+)
si:dkey-20d21.12 LOC101471973,LOC106098224,LOC107390607 other downstream 625559 27184494 ~ 27187943 (+)
G53488 NA other downstream 696439 27255374 ~ 27255716 (+)
LOC120559859 LOC101468803,LOC100690459 other downstream 853317 27412252 ~ 27417459 (+)
LOC120559343 NA other downstream 1026590 27585525 ~ 27595409 (+)

Expression


Co-expression Network