commd7 (commd7,LOC102794680)


Basic Information

Item Value
gene id commd7
gene name commd7,LOC102794680
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 476464 ~ 485895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801399.1
CTGAAGAACACGGAAGTGGAGTCCACAACAGAGCCTGCTGTCTATGATTGCATCCATGGCCGAGCAGCTCTAACTGTTTCTGTTTCCagataataattataataattaaaaagatGCAGCTTCACTTCACTAAAGACGTGTTGCCGGATTCTGTTAGCACCGACTTTCAGAACCTCAACAAACTCAACGAGCAGCAATTTCTGCGTCTGATTGAAATTCTGTTCCAGTTCCTCCTGGAGCCTAAAGAGacagaGAGGTTCATGCAGCAGCTTGGTGAGTTTGCAGGGGAACATGGGATGAGTGCCGGTCCTCTGAGGAGTCTGATGAAGAGTGTCCTGCTGGTGCCACAGgGCGCCTTGAAGAAAAACCTGACAGCCGAGCAGATCAAAGAAGACCTGGTGATATTAGGACTAAACCAAGACAAGGCGGCTCACTTCTCACAGCAGTGGGGGGAGCACTATGCAGCGCTGTCCACACTCGCTGTGGGACAGACTTTGATGGTCAACCAGCTGGTTGACATGGAGTGGAAGTTTGGAGTGACTGTCGGCACCAGTGAAGTACAGAAAGTGGGCAACATCTTTCTGCAGTTGAAGCTGGTGGTCAGAAAGGGGAATTCCACTGAAAACATCTACATGGAGTTGACGCTCCCCCAGTTTTACAACTTCCTACATGAGATGGAGAGAGCCAAGTCCAGCATGGAGTGTTTCagctgagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagagagagaatgtaagactgtgtgtgtgctcatgtcaggttgtagctgcaggGGTGTGTGCGTGGTATGTATTATGCCAcgttgcgtgtctgtgtgtggcccTGGGTGACTGAAGCTAAAccctaaaacacattttatgtaCTGCCAGACATTTCTACTCAAATaaacatgaatacaaaataaaagctttcaaCTTTCTCAAAGGGA
>XM_039801400.1
CACTGAAGAACACGGAAGTGGAGTCCACAACAGAGCCTGCTGTCTATGATTGCATCCATGGCCGAGCAGCTCTAACTGTTTCTGTTTCCagataataattataataattaaaaagatGCAGCTTCACTTCACTAAAGACGTGTTGCCGGATTCTGTTAGCACCGACTTTCAGAACCTCAACAAACTCAACGAGCAGCAATTTCTGCGTCTGATTGAAATTCTGTTCCAGTTCCTCCTGGAGCCTAAAGAGacagaGAGGTTCATGCAGCAGCTTGGCGCCTTGAAGAAAAACCTGACAGCCGAGCAGATCAAAGAAGACCTGGTGATATTAGGACTAAACCAAGACAAGGCGGCTCACTTCTCACAGCAGTGGGGGGAGCACTATGCAGCGCTGTCCACACTCGCTGTGGGACAGACTTTGATGGTCAACCAGCTGGTTGACATGGAGTGGAAGTTTGGAGTGACTGTCGGCACCAGTGAAGTACAGAAAGTGGGCAACATCTTTCTGCAGTTGAAGCTGGTGGTCAGAAAGGGGAATTCCACTGAAAACATCTACATGGAGTTGACGCTCCCCCAGTTTTACAACTTCCTACATGAGATGGAGAGAGCCAAGTCCAGCATGGAGTGTTTCagctgagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagagagagaatgtaagactgtgtgtgtgctcatgtcaggttgtagctgcaggGGTGTGTGCGTGGTATGTATTATGCCAcgttgcgtgtctgtgtgtggcccTGGGTGACTGAAGCTAAAccctaaaacacattttatgtaCTGCCAGACATTTCTACTCAAATaaacatgaatacaaaataaaagctttcaaCTTTCTCAAAGGGA

Function

symbol description
commd7 Predicted to enable NF-kappaB binding activity. Predicted to be involved in negative regulation of NF-kappaB transcription factor activity; negative regulation of transcription, DNA-templated; and tumor necrosis factor-mediated signaling pathway. Orthologous to human COMMD7 (COMM domain containing 7).

NR:

description
COMM domain-containing protein 7

GO: NA

KEGG:

id description
K22563 COMMD7; COMM domain containing 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801399.1 True 965 mRNA 0.48 9 476466 485895
XM_039801400.1 False 889 mRNA 0.47 9 476464 485895

Neighbor

gene id symbol gene type direction distance location
vps13d vps13d coding upstream 266727 74750 ~ 209737 (+)
LOC120558443 LOC104919493 coding upstream 410409 63849 ~ 66055 (+)
LOC120558328 nol4l,LOC103385166,LOC103361530 coding downstream 72322 558217 ~ 771056 (+)
zgc:194282 srms,LOC103385165 coding downstream 296896 782791 ~ 821180 (+)
ptk6b NA coding downstream 339360 825255 ~ 847622 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding downstream 453081 938976 ~ 986271 (+)
trim101 NA coding downstream 498274 984169 ~ 1010837 (+)
LOC120559841 NA non-coding upstream 99991 375096 ~ 376473 (+)
G46014 mapre1 non-coding upstream 111197 358822 ~ 365267 (+)
G46013 mapre1 non-coding upstream 135786 332243 ~ 340678 (+)
G46011 NA non-coding upstream 146056 323243 ~ 330408 (+)
G45931 NA non-coding upstream 246918 225945 ~ 229546 (+)
G46042 NA non-coding downstream 15454 501349 ~ 501559 (+)
G46078 NA non-coding downstream 376296 862191 ~ 871239 (+)
G46132 NA non-coding downstream 416544 902439 ~ 902678 (+)
G46133 NA non-coding downstream 416921 902816 ~ 903470 (+)
G46134 LOC104947167 non-coding downstream 417663 903558 ~ 907128 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other downstream 308007 793902 ~ 900296 (+)
LOC120559832 rps21 other downstream 750420 1236315 ~ 1247771 (+)
G46238 NA other downstream 791393 1277288 ~ 1284379 (+)
G46305 NA other downstream 1036790 1522685 ~ 1523231 (+)
G46328 NA other downstream 1150053 1635948 ~ 1638170 (+)

Expression


Co-expression Network