slc6a17 (slc6a17,LOC104944562)


Basic Information

Item Value
gene id slc6a17
gene name slc6a17,LOC104944562
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22919774 ~ 22942875 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801414.1
AAGCACGTGGAAACCAGAGGTGTGGGCACTGGTATTTTTTGCAGAGCTGCAGAACATCGTTAAAGTGATAAACAGTTGCAATAAGCCATTACCTGCACACGTTAATGTAATTAGTAAACAAACTTGTGGCAGGCGTCGAGCTCCTGCGTCAGACTTTACGCACCATGCGCCCTGTGTGACTAGAAGCTGATTTCGCATCTTTGCGCGCAGTGATGTTGTATACCGGAGACAGTGCCTGAATGAAGAGACCGTGCACTTTGCTTTGGATTCATAGTGTCACGCTGACACGGACGCTACAACCAGTTCTGTACATTACACAAGATTGAAGGAAAAAACACAACTTTCTTTCCCTGCTTCCTCCTGATCTCCCTCTTGTCAGTCTCCTCCACCACCTTCATCTTGAAGGAGCTCCGGTGTTGCAGCCATGCCAAAGAACACCAAGGTGACCCAGCGGGAGCACAGTAATGAGCCAGTCACTGAGTCGGTGGCTGACCTGCTATCCCTGGAGCACCCCATGGACTATAAGAGCAGTCAGATGAGTATGGGTTTGAGTCCTGGCTCTACCGCTCCAGTGAAGGCCCTGATACCCTCCCCTGACCCCGACGCAGAGGACGGCAGACCGGCCTGGAACAACAAGCTGGAGTACATCCTGGCCCAGGTGGGCTTCTCTGTGGGCCTAGGTAACGTCTGGAGGTTCCCCTACCTGTGCCAGAAGAACGGTGGAGGTGCATACCTGGTGCCCTACttcattctcctcctcctcatcggCATCCCCCTGTTCTTCCTGGAGCTGGCAGTGGGACAGAGGATCAGGCGTGGCAGCATCGGGGTGTGGAACTACGTCTGCCCACAGCTGGGAGGCATCGGGGTTTCCAGTCTGATGGTTTGCGGTTTTGTGGGCCTCTACTATAATGTGATTATCGGCTGGAGCATCTTCTATTTCTTCCAGTCTTTCCAGTATCCACTGCCTTGGGCTGAATGCCCCATCCAGAGAAATGGATCCCTAGCCATCGTGGAGCCGGAGTGTGAGAAGAGCTCGGCCACCACTTACTTCTGGTACCGCCAGACTCTCAACATCACCAGCTCGATCGATGACACCGGCGGCCTGAACTGGAAGATGACCCTGTCCCTTCTGGTAGCTTGGATCTTGGTCTGCCTGGCTGTCATCAAGGGCATCCAGTCCTCTGGGAAGGTGATGTACTTCAGCTCTCTCTTCCCATATGTGGTGCTTTTCTGTTTCCTGGTGCGAGGTTTGATGCTGAAGGGAGCAGTGGATGGCATCGCTCACATGTTCACCCCTAAGCTGGAAAAGATGTTGGAGCCGCAGGTGTGGAGAGAAGCAGCCACGCAGGTCTTTTTCGCTCTCGGCCTTGGCTTCGGAGGTGTCATCGCTTTCTCCAGCTACAACAAGCGAGACAACAACTGCCACTTTGATGCAACGCTGGTCTCCGTCATTAACTTTGTCACCTCCATCCTGGCCACTTTAGTTGTGTTTGCAGTCCTGGGGTTCAAAGCGAACATCATGAATGAGAAGTGTGTTGTCGATAATGCAGAGAAGATTTTGGGCTTCCTAAACACAGGTGTGCTGAGCAAAGAGCTCATCCCTCCTCACATCAACTTCTCCCACCTGTCCGCCCAGGACTACGCAGAGATGTACGGTGTCATTAAGACGGTTAAGGAGGACAGCTTTGACCAGCTGGGCCTGGACGCCTGTGTGCTAGAGGACGAACTCAACAAGgcGGTTCAGGGCACTGGTCTGGCATTCATCGCCTTCACAGAGGCCATGACACATTTCCCTGGCAGTCCCTTCTGGTCTGTCATGTTCTTCTTCATGCTGATCAACTTGGGTCTGGGAAGCATGATCGGCACCATGACTGGCATCACAACACCCATACTGGATGCTTTCAAGATACGCAAAGAGATCCTGTGTGtGGCTTGCTGTATCATAGCCTTTCTGTTAGGCCTGCTGTTTGTGCAGCGCTCAGGGAACTACTTTGTCACAATGTTTGATGACTACTCGGCTGGTTTGCCTCTCACTGTGGTGGTGATCCTGGAAAACATCTCTGTAGCCTGGATCTACGGCACTAAGAGGTTCATGCAGGACCTGGAGGACATGCTTGGTTTCAGGCCTTACTCCTTCTATTACTACATGTGGAGATTCGTGTCGCCAGCTGTCCTGGTGGTGCTCATCATCTCCACTGTCATTGAGATGGCCGTCAGTCCTGCAGGATACAACGCCTGGGTGGAGGCTGAGGGCGCAGAGCGTTTCCAAAGCTACCCTCCCTGGGCTTTAGCCATGGCCTACTCTCTCATCGTGGTGGCCATGCTGCCTTTACCCCTCGTCTTTATTGTTCGCCACTTCAACCTGATCTCAGACGGCTCAAACAAGCTGTCCGTCTCCTACCGTAAAGGCATGATGAAGGACATCTCCAACCTCGAAGAACAGGACGAGCAGCGCTTCATCCTCAGCAAGAAGCTCAGCGAGGCTCCTTCCCCGATGCCTACCCACCGTGCTTACCTGGGCCCCGGCGGCACCCAGGAGATGACCAACACCAACTATGGCACCAGCACCAAGACAGGCTACCAGAACATTGGCTCGCCCGAGTCTGAGCTATGATCCACTGAGCTCATAGATCCTCCCATCCATTATACCCCAGCCTTGcttagagagagggagacagaggaagaaaggGAGGAACAGAGGATGTCAAGAGGCAATGAAAATCCACTGTTGGTTGTTGCAGCGTTCATCACACTTTAACCCCCAGAGCTGAATCTCTCTATCCCCCGTTTTCTGCCCCTACGCTCCTCGCCTTTGGTTCTTCCCCGCCATAGGATCCGTGCTGCCAGTTGCCTATCAATCCCAGCTGTAATGAAGGGATTATGGGAATGTGAGTCCCACCAGATATGATGACATTTTCCATTTGTCAAAGTAAAaggggggcagagagagagggacataGACAGGAACAGAGGGAGGAGTGAAGCTTAGAAAGGTCCACTGAGGGCTTCGATACTACAAGCTTTGTTTTGTAATAAGCTCTGGCTGAGGTTAAGGTATGTGCAACGCTAAAATGCTTTACGTTGTACTAAACTGTGTGTTGACCAGTTTGGAGAAGGTTCTTTTTGAGACAGTTAGATGTTCCTAACATCTTATTATTCTGGTTCAGTTGTAGAAAATGATTTGTGGGGTTAGGATGGATGGAAGGAGACTCAGAAAGAAAACTTATTTTCATGATCAGTATCACCGTATGAGAACATTTGTCATCTAGAAAGCAAACGTATTACAAATGCATTCATATAAGTAGGTAGTAAGTCTTATAGTGTAAACAGTGTTCCAAGCACATTACATCTTTATTGTGCCTATCATGCATCAGCAATAATAACCAGTCAAAGTAGGGTCCTCATAAAACTGTGGATCTCCTTCTATCCCTACTTTCCCCACTGATGTAGAATACTGTACATATGTGTTGTGCAATAGTCTGAGATGTCACCGCAAATCGTGTATATACATCACAGAAGTGCAAAACTATTCGCTTCTTCATTTCTTCTCCATGAATACCGAAACACAGACACCCACTGTCGTTTTAGAGCATCTCTGAGCCTTAACACAGAGCAACACTTTTCTTTTAAACAACCTTTCTTCTTGAGAACTAAGGCTCTGGAGCTGTTGCCAACAGCACTGCACACGTTGTCTCGCTGCTGTTCCAGTCGCAGCTGGTCTAGACAAAGCTTTTCCATTTGAATCAAGCAATTTAATCAAGCAATTCCATTTTAATCAGTGCCCTAGAAGGGCAGAGGTGGCAGTACACGAGTAGAGATAAGCAGAGCGGCATCACgctggtctgtctgtgtgttaatgAGGCAGACCTAGAAGGAATTGGAAAATGTGAGTTTGTGTACGTGCCTGTGCAAGTGTGCGTGCGTCAGTGTGTCGTCTGCCGCTGAATGAGAGCTCCCAGTGACCCTGCCTCTTTAAAAATAGAGCAGCGTTACCCAGGGTAAGCCGTGGCAACACACCATAGATACAGATCCTCTTCTGATgtgaaggaggaagagaagagtgGACATCTTGCTTTGTCTGCTCCACCTGCACAGCTATGTACTCAgcaatacacacaatatattttACTGTTGAGGCCCTACAAGAATATATCTCGAATATAATGTTTTACAGTGCATTGAGTAAGAGGTTCACTGCCGTGCCGTGTTTGGGTTTAATTGTTGTACATTCCTCAAATTGTAACCACTACAGATTTCATAAGCACTAAAATGTACACTttgatgtatttttgtgaacTGAGGTGTGAAAagttttatccttttttttgtaaaaaaaaaaaatgtctataaTCTTGTATGACAACGTATGTTTAGCAGTATAATATGGAAAATTGTGCAGTGATATAAATATTTGGACTAAGTGGTAATACACAGATTTCATCACTGGATGTCTCTGTTGGCCAGCAGAGGAGCCaatgactctctgtctctcgtgGCCCCTCCCTGAGACAACACCAATACTTGAGACTGAACGGATGTATTGTGAAGCACAGTCAGTCACATTGTTTGGTGCCTGAACAGCATATCTGTTGTCTGTTTGCCTTATGCTTTTCTCAGTTTGGTTCATCTCATTCACTTGAGCACTTTAATTAGGTAGAGACCCTGGAGTTGTTTGTCAAGTGCAGGTTGGACAAAAGCTTTGTCAGTAATCACAAGAATGCTGTCACAGAACATGTATTGGTtagtaatatttatatatagtgACAGATTGAGGGAGCTGACTGGAGGCACAATACACAAATGTATCAAAAGCCACTTTGTCAGACACATCTGGTTTCTTGTGTGTTAGTTAAGCAGATTGTTTTCTGTAAACTTTGAGCATTTTAACAATAATGTTTCATCTTATATTGTTAAGAGCGTGTTGATGCGTTGAATTTTTCCCTGTTATCACGCCAGTGTTGATTGATGCCATTGGATAGCTCCTAGGTCCTCCAATTTTACATAATGTAAGTCTTGACCAATGCCTATGCTATTACATGGCTCTTACTATCTGTTTAggtgaaaacaaaacaatagaAAAACAAAGGGATCTTTCCACACTAGTCTCCCCCTAAATCACAGGAAAGGTGGTTGCTCTCCATCCTGAATGCATTAGGATCTTACAAAtgaacatgtaaacacacattaGCCAGAGTATAGCTTGCTCAGTTGCTAAAAATGAGTGTGCAAAAACATGCAGAACTACTGTGATAACATGTACAAGAAACCAGATGTTTTTGGTCAATTGGCTTGCAACACAAATTACATAACCTCAGGTGAAGGCACTCTCCTGAACTCACCTGCAGCTTAAAAACTCTGACACACCAGGGCACATTAAAGCACATTAAAGCACATTTATGGAAGCACATGAAAGTGAGCACAAAGGAGTGAGCATGCCTTGGTGAGCAAGCTCCAGTCAATGAGTTAAAAATAGAGTGTGGGTGATCTGGATGATGAAATCTGTAGATTATGTTAGTTATGGTATAATTCCTGCGTCCTCCAAGGGGTCACTGGAGGATAAGTCTGCACACTGAAATGCACTGCCATCTACATAAGAAGCTAAACTGCACCATTATAGTTTGTTCTAACTATAGATTGATCtgtacaataaatacataagaGGTGACAAACCTGAGCTTATACTGGTGTGGAGGAAAAAGCACAATCAAAACACATGAGTTCATAGAGTCTTTTGAAAACAGCAATATCAAGTTTAAACCCCTGGCTTATTTCAATACATGATGCACAGTTTGCCACATTTCGCCAAGGAGTTCCCACTTCTCCACACCAGGCAAAGCAGGTCTTGCCTCTAACATTAAATACACTGTTGAAATACTCTGCCCAGTGGAAAAATGTCTTATCATATTGTTTAAAATTTGCTCAGTAAAAAGATATTGGCATTTGTAGGCTATTGATATTGGATATTTATTGTTGAAAACTCCAACTCCAGGGTCTCTTTGTCTTGTCCATGTGTCGGTTGTGTTGCATTAGATACTACAAAGCAACTTCTAGATTACTGTAACTCAGTTGAATTACTGTGAATAACGCAACAAAAATAGAGTAatagtgttttatttaattgtgcAAATAGTCTTTATGTGAACAAATCCATAGTTATATTTATAGTATTTAAGACATGAGATGTATTTAATCTGTACATATTGATGTACATTCTGATAAATCCACACTGAGTATAGTATAGCATATAGTAAGAGTGACCGGGTGTATACTTGAGctgtaaataataattgtatattttgatatattttttgatttttgtaCTGTAGGTAATGTTACTTTGCTGTCTAttggtttctgtgtgtgtggttgttctCAATCAAAATAGCTGcgcgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtaaagtaagaGTATATGTAGGTTTTtggtgtttaaatgtgtgttttttctcctctctctgttgtgTGCTGCTGATCTAATCCAGTAGATACAATCCTGTTGTTACAGTGAACTGGGACCACTAATGTAAGCAATCTCTGCTCTGTTTTTCTCACTGGAACTACAGTGGCTTCCAGCACAAAACTGACAACACAAGGAAATGTTTGAGTATATATAGTCAAACATTTCCTTCTGATTGTTCAGTCGGAATCTGTGTGTGAAGATTCAGGTTGTTATAACATTGATACAGAAACTAAAGTTCTTTGGTTGAAGAGAGTGATGAACTGTACAAAAATGATGAAGTGAAcaggaaattaaaataaacacttTTATTAAATAGA

Function

symbol description
slc6a17 Predicted to enable symporter activity. Predicted to be involved in neutral amino acid transport and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in synaptic vesicle. Predicted to be intrinsic component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human SLC6A17 (solute carrier family 6 member 17).

NR:

description
PREDICTED: sodium-dependent neutral amino acid transporter SLC6A17

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801414.1 True 6820 mRNA 0.45 12 22919774 22942875

Neighbor

gene id symbol gene type direction distance location
slc16a4 slc16a4,LOC102787232 coding upstream 42512 22847985 ~ 22877262 (+)
LOC120559530 LOC104964419,LOC104927136 coding upstream 91226 22826631 ~ 22828548 (+)
LOC120559125 NA coding upstream 96131 22811870 ~ 22823643 (+)
mmp9 mmp9 coding upstream 108303 22806923 ~ 22811471 (+)
adora1b adora1,LOC103368126,LOC101166301,LOC102200284,LOC101484151 coding upstream 123792 22791665 ~ 22795982 (+)
ngrn NA coding downstream 88421 23031296 ~ 23033104 (+)
sypl2b LOC104926818,LOC104942234,LOC103367903 coding downstream 114174 23057049 ~ 23061335 (+)
gpr61 LOC104942230,LOC103367872,LOC101482146,LOC102303595,LOC100709777 coding downstream 156678 23099553 ~ 23104095 (+)
gnai3 LOC103367862,LOC105931781 coding downstream 167055 23109930 ~ 23126912 (+)
ampd2b LOC103367831,LOC100709506,LOC102200760 coding downstream 202811 23145686 ~ 23167490 (+)
G52342 rbm15 non-coding upstream 31087 22884049 ~ 22888687 (+)
G52333 NA non-coding upstream 72478 22834798 ~ 22847296 (+)
G52294 NA non-coding upstream 157220 22750063 ~ 22762554 (+)
G52288 NA non-coding upstream 190219 22726597 ~ 22729555 (+)
G52287 NA non-coding upstream 193643 22725873 ~ 22726131 (+)
G52379 ahcyl1,LOC104942237 non-coding downstream 66302 23009177 ~ 23020008 (+)
G52364 nfya non-coding downstream 77931 23020806 ~ 23023328 (+)
G52403 atp5f1 non-coding downstream 198035 23140910 ~ 23192988 (+)
G52461 NA non-coding downstream 279051 23221926 ~ 23246504 (+)
LOC120558323 NA non-coding downstream 322356 23265231 ~ 23275195 (+)
lamtor5 lamtor5,LOC102787529 other upstream 72836 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 357253 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 359446 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 824884 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 859129 22046763 ~ 22060645 (+)
atxn7l2b kcnc4 other downstream 48377 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 803490 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 848572 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 1997920 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 2010567 24953442 ~ 24957330 (+)

Expression


Co-expression Network