tmco4 (tmco4,LOC102793724)


Basic Information

Item Value
gene id tmco4
gene name tmco4,LOC102793724
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30650112 ~ 30658892 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801572.1
ttAACGTGTGCCTTTCAGATATCAGAGCTCAGGAGGAACACGTGAAGGCAACAAAAGTTTAGAGTAAAGAGATATCTGTGGCCATGGAGGAAAAACAGAGCAATACGGACACCACTTTTGCTCCAGACCCAGGGGGGGCTGTAACAACACAAGATGGCCCAGGTGACCCCAGCCCAGAGGAAGTAATCAGCAGACAGCTGACTGAACAGGGCCGGTTTGCTTATGCTGCactgtgtggtgtgtctctggGCCAGTTGTTCACTGGACCTGAAAACAGtgtgttcagggacaaGTATCTGCAGGGCTTGGTCCGCTGGCTGAACCTGGATGAGTCGGTGATGCCCGTTATGGGGGCTTTCCTGTCAGGCCTGGGCTTTGAGGGCTCCGACACCTTTCTCTCCATCCTACAGGCCGAACCACTTCTGGCTTCAGGGGCCACCCCCATCATACAGGATCTGGTGTCTTTTTCTGTCAAAGACGGCCAGTACGATGCCAGATCGAGGGTTCTCATCCGTCATGTCAGCTGTCTGCTACGAGTCTTTCCACAGCAGCTGGAGGAGTTTGAGGAAACACTGGGAGAGAGGCTGAGGGAAGCAGGAGAGGAGAGCGAAGAGGAGTCCTCTCTGCGTCTGAGGCGAGAAAGAGGGCGAAAGTTGCGCCGCTATCTCCTCATTGGACTAGCCACCGTGGGAGGAGGAACTGTGATTGGTGTGACAGGTGGGCTGGCAGCCCCCTTAGTGGCAGCAGGGGCCAGTGCTGTGCTGGGTGCAGGAGGGGCTGCTGCTCTGGGCTCAGCCACTGGCATTGCAATCATGGCCTCCCTGTTTGGAGCAGCAGGAGCTGGATTGACTGGCTATAAGATGAATAAGTGTGTCGGGGCGATAGAGGAGTTTGAATTCCTGCCGCTGAGATCCGGGAAGCATCTTCACCTGACCATCGCGGTGACAGGTTGGCTCTGCGGTGGTAAATACAGTTCGTTCCAGGCCCCGTGGTGCAGCCTTGGCGAGTGCGGGGAACAGTACTGCCTGGTGTGGGAGTCTCGTTTCCTCAAGGATCTGGGCTCAGCCATGGCCTCTCTGTTGGATGGGCTGGTCAGCATGGTGGCCCAGGAGGCGCTCAAGTACACAGTGCTCTCAGGCATTGTGGCGGCTCTGACGTGGCCTGCATCTTTGCTGGCAGCAGCCAGTGTCATTGACAACCCCTGGTGTGTTTGTCTGAACCGCTCAGCTGAAGTGGGGAAACACCTGGCACAGGTTTTGAGAAGCAGACAGCAGGGTAAGCGGCCTGTCAGCCTCATAGGTTTCAGTCTTGGGGCCAGAGTTATCTACTACTGTCTTCAGGAGCTTGCAAACGACAAAGGGAGTGAAGGAGTAGTGGAGGATGTAGTCCTCTTGGGGGCCCCCGTGGACGGCTCTGAAAAGGCCTGGGAGAGAATGTCCAGGGTAGTGGCTGGAAAGATAGTCAACGGCTATTGCAGAGGGGACTGGCTCCTGGGGTTCTTGTACCGAAGTTCATCTGCACAAATGTCTGTTGCTGGGCTACAGCCAATCAACATCCAGGATCGGCGTATAATCAATGTGGATCTTTCCTCAGTGGTGAAAGGTCACTTGGACTACATGCGTCAAATGGACACCATCTTGGTGGCAGTCGGTGTTCCCACCAAAGAAGTCCCAGGAGCCTCCTTTGCTCTTCCTCACTTTGTAACATTCACACAAGGGACAGTGGACATCACGGAGCAAACCCCCAACGAGCAACAAGTGACTGAGACACAAAACCAAGCCGAGGAGGCTGAGACCTGCACAGGAGGAAGCGGAGACGTGAAAGAGGCGGCAGAGACCGAGGAGATGGGCGACGGTTGGGATATCCCTGATATTTCAGACCTGCTGGACTCATTAAATGATACCGAATCGGACCGGAACAACGTACTACAAACTTCTGAGGAGAGTGCAAGTAACGACAACACAGCATCTGCTTTAAATGCCCCGAGTGACGGCGTAGAGGAGGCGGACCCTGACAATGAACACATATCATGGAGCTGGGATGATACACACTGGactacagagcacacacacgAACAAAGGCAGCCAAACTTGTAAAGAGCATGTTACTGGGCCAGCTGCTTCCCTGTAAAATCTTGTCTTCTcgagttttttagttttttcagcATCAAAGCTTTGTTGGTGAAAATATCCATTCCGTTCTCAACACGCCGAGAGGGAGACGGCTAAAAAGTCAATGCACACATATGGCAGCCTCAAGTGAAAATCTCCGGCTTTGTTTAATCACAACATGTTGTTTTTAGACAATTTTTAAGATTTTGTAAATGATGTACATTTTTATTACCAACTGTAAATAGTGTcctaaattgttttctaaactCGCTGTGAGATCAAATACCTGTAAATATTACTTGTCTCTTGCAGATTTTAGAGGATGCTACACAATAGGTGATATCTCTGTTCCTCTCACATCCTTCTAATTTTCATCCATTGGCCTGGTTGCTATGGATATCTCACAGTATTTATTTTCCATAGGGCCAAGGATAATTCAGTGAATGCATCTTCTTCAAGGTCTTTCTTTTCTCTATTCCGTCCATGCCAATGTGAAGCACTGCTTACTGATAATACTGGAAAAAGTTGGTTTCTTCATCCATATTTCGTAATTGTAAAGACATAATTCAAGATAGAACAAGGGTGGAACTTTGTGTCATGGACATTTTTCTGTGACAATAAAAAATGAGGCGAGTGAGTAAATCAGAAA

Function

symbol description
tmco4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMCO4 (transmembrane and coiled-coil domains 4).

NR:

description
transmembrane and coiled-coil domain-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801572.1 True 2760 mRNA 0.50 14 30650112 30658892

Neighbor

gene id symbol gene type direction distance location
csde1 csde1,LOC102790132 coding downstream 19564 30612093 ~ 30630548 (-)
ampd1 ampd1 coding downstream 46959 30587509 ~ 30603153 (-)
dennd2c NA coding downstream 64460 30563560 ~ 30585652 (-)
LOC120559739 rnf223 coding downstream 103030 30541501 ~ 30547082 (-)
mtor mtor coding downstream 450272 30103231 ~ 30199840 (-)
zgpat zgpat,LOC102796033 coding upstream 238085 30896977 ~ 30902908 (-)
LOC120559110 vstm2l,LOC101479893,LOC102782703 coding upstream 269351 30928243 ~ 30981176 (-)
ctnnbl1 ctnnbl1 coding upstream 329182 30988074 ~ 31057576 (-)
LOC120558334 NA coding upstream 454868 31113760 ~ 31125091 (-)
e2f1 e2f1,LOC102780950 coding upstream 469336 31128228 ~ 31141874 (-)
G54407 NA non-coding downstream 14762 30633932 ~ 30635350 (-)
LOC120559660 NA non-coding downstream 30222 30619266 ~ 30619890 (-)
LOC120559738 NA non-coding downstream 149781 30496040 ~ 30500331 (-)
G54272 NA non-coding downstream 747392 29900560 ~ 29902720 (-)
G54189 NA non-coding downstream 827295 29822520 ~ 29822817 (-)
G54444 NA non-coding upstream 126201 30785093 ~ 30785797 (-)
G54470 NA non-coding upstream 230126 30889018 ~ 30889218 (-)
G54508 NA non-coding upstream 405849 31064741 ~ 31064972 (-)
G54509 NA non-coding upstream 439088 31097980 ~ 31098185 (-)
G54549 NA non-coding upstream 576355 31235247 ~ 31235474 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 577413 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 884239 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 1157137 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 1294228 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 1620791 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 1634050 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 1932091 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 2108465 32767357 ~ 32773486 (-)
G54834 NA other upstream 2221301 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 2307743 32966635 ~ 32971163 (-)

Expression


Co-expression Network