pim1 (pim1,LOC102786254,LOC100704168,LOC102192917)


Basic Information

Item Value
gene id pim1
gene name pim1,LOC102786254,LOC100704168,LOC102192917
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 33068885 ~ 33073078 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801586.1
CGGTGTCCGACTGAAGCATCGCACTGTACACCGTCTTCTCTGTTTATATCGTATAACTGTTTACAAAACATTGCGGGAAACAACAGGGGTTTCGCTTTAGGTTTAAATGTGAACTCAGTTAACCCGGGACGAAGTTTTTGGCTATATTTCCTTGGATCACAAGCGCCTTTTCTTCTATCCGGATGAAAGGATCCCTACCGCATTTTTGTTTCTGCAACGTGGACTGTAAGCTCTACACGGGAGACGGGAGAGCCGTACTATCGGAATAAAACTACTGTTGTAAACCAAGAAAACACGAAGAACACAAACGTCGTAGGCCTGTGGTGGATATCCTCAAAGGAATGTTGCTGTCCAAGCTCAATTCTCTGGCCCACATCTCCACTGTTGACATGCCGGCGAAAATCCAGCTCCAAGTTCATCAAGtgaagGAGAAGGAGCCTTTCGAGAAGCTGTATCAGGTCGGCGCGGTGCTGGGCAGCGGCGGCTTCGGCACTGTCTACTCCGGTACAAGGATAACCGACGGAGCTCCGGTCGCTGTCAAACATGTGGCCAAGGACAGAATCTCCGACTGGGGAGAGCTGCCTAATGGCTCCCGGGTCCCTTTGGAGATTGTGCTGTTGAAGAAAGTAGGGACGGGCTTCCGTGGCGTTATCAAAATGCTAGACTGGTTCGAGCGACCGGACAGCTTCATCATCGTGATGGAGAGGCCCGAAAACGTCAAGGACCTGTTCGACTTCATCACGGAGAAAGGTGCCTTACCGGAGGAGCTCGCGCGGAGCTTTTTCCGCCAGGTGCTGGAGGCTGTGCGGCACTGCCATAACTGCGGCGTGGTGCACCGGGATATCAAAGACGAGAACATTCTCATCGACCTCCGCACCGGAGAGATGAAGCTTATTGACTTCGGATCTGGAGCCCTGCTCAAAGACACCATATACACAGACTTTGATGGCACAAGAGTGTACAGCCCACCGGAGTGGATCAAATATCATCGCTATCATGGACGCTCTGCCACAGTTTGGTCCCTGGGGGTCTTGCTGTATGACATGGTGTGTGGGGACATTCCATTTGAACACGACGAGGAGATCACAAGAGGACAGGTCCTTTTCCGGAGGAGGATCTCCACAGAATGCCAGCAGCTGATCAAGTGGTGTCTGTCTCTGCGGCCAGCTGACCGTCCATCCTTCGAGGACATCGTCAATCACCCGTGGCTGCAGAGCACGTCCTCCTCTGTAGTCCCGTCCACGGTGCAGACAGAGAAGACGAACACGGAGATCAGGCTGCACAGCATCAGCCACGAGCCCGCAGCCTTCACGCCCACCCCTGTGGCTGTGGCTCGGTGATGGAGGCAAACAGGGCTGCTCAGGTCTGAACTGGACCGCACTGATCCAAGAGGCTATTACAAAAGACTTATGTAACCGACTTGAAGCAGAGAGGAGGGGAGCGGTCCTGACACTGGtgagagcaatgtgtaaaggaCTACCCACAGAGAAAAAACCCAGGTCATGACAAaaccatcatgtcttttttcaaCCTGGCAGGACAGACCCTCTCCACCCCAATTACATGACTTTCCCAGCCGTTGACTGGCGTCGGTAGGAGGGCATGCTCTGTATGCACAGACACCTGCGTTGAGCAAATCCAGTACACGCACTCGCTGTTTCTGCTGAATGAACAGTCTGCGCTgtactctgctctctctctccctctgttctcTCTGTCGCAGCAGGATGGGAAGAGCAGAGGCGTTGGCAAAGAGGAGCGTTGAttctcaacaacaacaagaaaaagTGCCTTCTGTGAGATTGTTGGAGGACCCTGAAAATACTTGAATTCGTGAAAGCAAATAAGGCTCTTCTTCTCAGAGACATTTTTGCTCCTTACTCCGTACAAAGGCTTTATATTGTTCATTGCTGTTTTTTCCTCTCATGGGCCTAGATCAGTAAAGCCTATGTCATTTTACAACCACTGCTATCACTACGTCTAGTACTCCAATGTCATTAGCAACCAGACAACCTCATAGCTCCGGCTGCAGCAAACCTGTGCAAACGAAtcataaaaaagaaacactggACTTACCTCACTCTATTTACTACAGCATCCACCTCTACTCTACAACCTCcacttcctcttcttctcttgttgtactgtatacaacacaAGGTTCACATCCACCGGAATGCACACCACAATGCAAACGTAACCATACCGAAATACAACATCCTCTGCTCTTcacttttcaattttttttattttattttatttttatgtttaaacagTGCCTCACACAGGTCTTACAATTCGGTGGGTCAAGAATTgtaaataataatgatatttattattgctgtgaCTTCTTTCTCACACTCAATGAGCgcagaatttatttatttatttatgagagAATTTCGGCTGTCTGTATTGTATTTCATTCCACAGTCACATAAGGGCCCACAGattatttaaaagaaacaaagacgagatgaatttttttttttttgtaaaccatATTTATGGCTTGGAATTTGAAAAGAGCAGATGTGTTTGTgggtatgtttgtgtatgtaatatACATAACGTGTAAATAGTCCCAAAAGCACTTCCAtcttaatgtatctaaacattGAACGTCTACTGATGGTAACTGGTTTTGTCACgctgttgtctgctgtgtgaGCAAATGAATTTCGaatgttgggtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgcaaatgtcatgtttgtgtgtgagatgtgAAAATGAGAAAACTTCTAGTTTGAATGCAGCTTggattgttgttttttcatccaTTCAAATTAGAATTGTAAATTATGTTAGAAACTATTTTTATACGatttcaataaatatttttttaacaa

Function

symbol description
pim1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within camera-type eye morphogenesis and optokinetic behavior. Predicted to be active in cytoplasm. Is expressed in brain and eye. Orthologous to human PIM1 (Pim-1 proto-oncogene, serine/threonine kinase).

NR:

description
serine/threonine-protein kinase pim-1-like

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007634 optokinetic behavior biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04702 PIM1; proto-oncogene serine/threonine-protein kinase Pim-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801586.1 True 2874 mRNA 0.46 6 33068885 33073078

Neighbor

gene id symbol gene type direction distance location
zgc:103759 LOC104952901,LOC101466673,LOC100706292,LOC102192048 coding downstream 47541 33016489 ~ 33021344 (-)
arhgap4b LOC103371877,LOC102798993,LOC102215860 coding downstream 54036 32972595 ~ 33014849 (-)
fam50a fam50a coding downstream 103121 32950105 ~ 32965764 (-)
si:ch211-207e14.4 NA coding downstream 118903 32934467 ~ 32949982 (-)
sars1 sars coding downstream 135871 32910758 ~ 32933014 (-)
LOC120559907 NA coding upstream 148386 33221464 ~ 33240428 (-)
LOC120559885 NA coding upstream 198054 33271132 ~ 33294480 (-)
LOC120559567 klhdc8b coding upstream 250727 33323805 ~ 33470306 (-)
si:dkey-32e6.3 NA coding upstream 435610 33508688 ~ 33524809 (-)
usp19 NA coding upstream 452777 33525855 ~ 33554185 (-)
G54735 NA non-coding downstream 380247 32688205 ~ 32688638 (-)
G54734 NA non-coding downstream 382271 32683360 ~ 32686614 (-)
G54733 NA non-coding downstream 386369 32682162 ~ 32682516 (-)
G54731 NA non-coding downstream 393420 32675265 ~ 32675465 (-)
G54724 NA non-coding downstream 471392 32596572 ~ 32597493 (-)
LOC120558525 NA non-coding upstream 100788 33173866 ~ 33183318 (-)
LOC120558313 NA non-coding upstream 235053 33308131 ~ 33308924 (-)
G54922 NA non-coding upstream 245742 33318820 ~ 33319024 (-)
G54947 NA non-coding upstream 431735 33504813 ~ 33507223 (-)
G54949 NA non-coding upstream 434356 33507434 ~ 33508423 (-)
zgc:158296 NA other downstream 97722 32966635 ~ 32971163 (-)
G54834 NA other downstream 181595 32880193 ~ 32887290 (-)
G54756 LOC107088573,LOC106566972 other downstream 295399 32767357 ~ 32773486 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other downstream 402426 32590983 ~ 32666459 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other downstream 745610 32292942 ~ 32323275 (-)
lamb2 NA other upstream 482722 33555800 ~ 33614940 (-)
G55124 fam110a,LOC104960682 other upstream 950940 34024018 ~ 34127495 (-)
G55131 NA other upstream 1014892 34087970 ~ 34093118 (-)
ntsr1 ntsr1,LOC103361890,LOC104959625 other upstream 1163488 34236566 ~ 34291069 (-)
LOC120559165 NA other upstream 2196818 35269896 ~ 35277854 (-)

Expression


Co-expression Network