lrif1


Basic Information

Item Value
gene id lrif1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 36610137 ~ 36625969 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801622.1
caggagcagaaaccttCGTTTCACAATCTCACTGCTCGTGTTCAGTCTACCTCGGatgttttttttagacattatggctaataATCTAAATCATTGGTGATGGAACGTAATGGGGATTTTTTTTACTTCCGGAGCTATGCAACCAACCACCCGGAACTACATTGCTGTAACAGACCGGAAGGTTGATGTAACGGACGCGATATAGAAACGGAAGCCCCAGAAGAAAAATGTCGAGTGAAAAATGTTAAACGGGGGTTTATTTAGTCGACGGTTGACCCCCGGCGTTGTTATAGACAACCTCTCCGTTTATCTACGTTAGGGACGGAACTTAACACGCACGTTGTGCCGTGAATTATTTTGTCTCGAGACTCATTTAAAGCTGCTTTTGGATGGGAACATTACAAGCCAGGTCCAACTGGTTTCATGATGTTTCCCGCTACGAAAAACATGGATTCTATTCACAGTGGGACCGGTGTCTTCTACCAGGCCATACCTGCTGTCGGAGCCGACGGAAAGAACATCATGAAACTGATTCCTGTACAAATGGTCAACGGGCAGTTTTTCCAGTCTCCAATAAGCAAAACGGATTCGACACAACAGAAAGCTGTCGGCGTGAACATCGCCTCAGCACCTGTTCAGACGGTGCAAAAGGCAGCGTTGAATCCTTCTGCCACTCAGCAAGATGTCAGGAAGCAGGTTTCCATCATTAATGTCTTCCCTAATCAAGTGGGTTTGGATCGCAGTAGTTCACTAAACAAGCATCCACTGCAGCAACAGAGGGTGAATTTAATAGCCATACCTCAGATGGAGACACCTGCAGCAAACAGTGCGAAGTCAGGAAGACCTCCAGGTCCGCTCCCAGTCACCGTGAGAGCTCCAGCCATCCCCAGAGGACGGTACCTTCAGATTACCCCTAATGCAACAGTCCCAACAGTCCCGAGAGTACCAGCAGTCCCGACAGTCCCAGCAGTCCCAACAGTCCCAACAGTCCCAACAGTCCCGAGATCCCCAGCAGTCCAAACAGTCCCAACAGTCCCGAGATCCCCAGCAGTCCCTACAGTCCCAGCATCTGAACTACCTCCTCGTGTCAAGAGACCGATTTTTCCTTCGCCAGCCAACTCCACTCCAAGTTCAGGCTCAGCCGGTGTCGTCGACACGTCACCAGCTGTCACAACTGTCAGTGTTTCTGCACTCGACACGCTCAAGTTTCTCTGCAACATGTCAAATGCTACTTCATGTGGATCGCCATCAAAAGGACCACAACCACATTTAAAATTAATTCCAAAGGTTTCACAGAGGCCCAACAGCCCCATTAAGTGGGTAATCGAAGAAGAGGACAGCTTCGCGGCTCCGACTCTTGATCCTGCTAATTTTTCCGTCAGTTCAGAGATTCTTCGAGCCTtcgcagagagagaaagtgctCCCAAGCACTGCGACGCTTTTACAAATCCGGTCTCCGGGTCGAGTCTGGGCAAAAGTGGACAAGGACAGGAAAGCCCCTCGGTCACCTGCAACAGGAAGGTGGTTTTGGCGGCCAAAAACGGCAGCGTACCATATAAAATGGGAAAAAGCGACTCACCCGCAGCAGCGGGAAAAAGTCATGAATACAACAAAACCACCGTGCCTTCATCCCAACATTCACTTGGATCAGTTTCACCTCCGAAAAGGCAGGGCATCAGAATAATCATCCCAAAAGGGTCGCACGAAGTGATTGATCTCTGTGACGACGACGCTCACATTGATTCGTCCCCACCAGCGGCATCCGTCCACATGTCAGCGGCCACTCGTCCGGACGAAGACAATGTAATATTTGTGTCGTATATCCCCCCCAAGACTGACTCGGAGTCCACACAAGATTTGAGACTAAAAACACAAATGGCACCTGGGAAGGAAACGGACAAGACGGGTACAAGCAGCTCGAACAATGTGACAGAACAGAAGAGCCCGGATTGTACAACGGGCACTCTCACAAGAAGAAAACCTGTCCACAGCATGTCCGTCAACGCAGCTAAAAACGTTCCGCGTGTTTTCGGTTCAGCAGCGATGAACATGCAGAATAATGAGGGTCCGAACATCAGCAGTCGGCGGAGCACCGCCACCCAACAGTCGAAGGGCGTGGAAGTTGATGTAGAAAGACAAAGTCCAGCAGATCGTGTAAATATTGCCTCAGCAGCTGTTCAGATGGTGAACAAGGCAGCGTTGAGTCCTTCTGCCACTCAGCAAGTTGTCCGGAAGCAGGTTTCCCTCATGAATGTCTTCCCTAATCAAGGGTGTTTGGATCTTCCACTGCAGCAACAGAACGTGAATGTAATAGCCGTTGTACCTCAGATGGAAACACCTGCAGCAAACAGTGCGAAGTCAGGGAGACCTCCAGGTCCGCTCCCAGTCACCGTGAAAGCTCCAGTCATCCCCAGAGGGCAGTACCTTCAGATTACCCCTAATGCAACAGTCCCAACAGTCCAGAGAGTCCCAACAGTCCCGACAGTACCGAGAGTCCCAGCAGTCCCGACAGTCCAAACAGTCCCAGTAGTCCCGACAGTACCGAGAGTCTCAGCAGTCCCGACAGTCCAAACAGTCCCAGTAGTCCCGACAGTACCGAGAGTCCCAGCAGTCCAAACAGTCCCAGTAGTCCCGACAGTACCGAGAGTCCAAGCAGTCCCGACAGTCCCAACAGTCCCAGTAGTCCCGACAGTACCGAGAGTCTCAGCAGTCCCGACAGTCCAAACAGTCCCAGTAGTCCCGACAGTACCGAGAGTCCAAGCAGTCCCGACAGTCCCAACAGTCCCAACAGTCCCAGCATCTGAACTACCTCATGTCAAGAGACCGCTTCTTCCTTCGCCAGCCAACTCCTCTCCGAGTTCAGGCTCAGCCGGTGTGGTCTACACGTCACCAGCTGTCACAACTGTCAGTCCACAAAATGTTTCTGCACTCGACCCGCTCAAGTTTCTCTGCGACACGTCGAATGCTACTTCATGCGGATCGCCATCAAAAGGACCAAAACCACATTTAAAATTAATTCCAAAGGCTTCACAAAGGCCCAACAGCCCCATTAAGTGGGTAGTTGAAGAAGAGGACAGCTTCACGGCTCCGGCTCTTGATCCTGCTAATTCTTCCGTCAGTTCAGAGATTCTTCGAGTTgttgcagagagagaaagtgctGCCAAGCACTGCGACGCCCATACAAATCCGGTCTCCGGGACAGAACAGAAGAGCCTGGATGGAACAACGGACGCTGGCCGGAGTGTGTCCGTCAACACAGTGAAAAACTTTACGCGTGTTTGTGGCTCAGCAGCGATGAACATGCAGAATAATGACGGTCCGAACTTTAGCAGTCAGCGGAGCACCGTCACCCAACAGTCGGAGAGCATGGAAGTTGATGTAGAAACAAAGAGTCCAGCAAATCCCAGCAACTCTGACAGCAGCAAAATAGCGATTGACACCCACAAAATGAAGAGCTCCGTGAATCCCGCAACCAGCTGGACGTCTTCGCCGGCACCAGAATCCCGTCGACTGGCCGACAATCTCCTGAGACAGACATTTGGGATAACGGCCAATGTGAAAGTTTGCCTGCAGAGGATTGACGGTTCCTCAGTCGGGTCTCGTCCCGCAGGGTCGACAGGGGAAGAACTTTCTTTAAAGGACCTTAACCGTCCCCAAGAAAGCGACAGCTGCAGCGGCGTGAAAGCAGAAGGCTCTGCCGCTCCGAGCGCTCGCACAGACCTCGAACCTCTCAGATGTTCACACTTCCAGCCGAACACGAAACCTCTCTCTGTGTTGAAGAGCAAACGCCACGCGGGTGACACTCCACTCAAGGGAACGTCGTGCGATGTCGAAACGGAGCCGGCGTTTGGCTACGTGGAACCCATAGATGAGGATTTCCTCAGCGCGGATGAAAACGACATCCCAAACGCGCAGGACGCAGCCGGCCGGCCGCAGACTCAGACGTGTGCGGATCTGAACGCGAACACGAGGAGAATGGGAAGAACCAGGAAGCGCACGATGTGTCCGTGCTGCATCCCCGGTGCCCAAGACCCAAAGTCAGAGGAGCCAGAGGACTGGGCGTGGGCCACCGAGCAGACAAGTAAAAAAGGGAGGAGAACAAAGGCTGTGAGGAAAGCTGTAAAAACATCTGGAAGGACCTACTGTCTAAGCGCCAGGAACAAGCGCGGCGGTAAGGCCCCCGAGGTTCCAGCCAGCGAGAGCTTGTCCGCGGCGTCCGTGGACTCTGACGAAGTGAAACGACAGGAACGGATCAGGAAGCTCAAAGAGCTTCTGAAAGAGCAAGAAGCAGCTTTAGAAGTGATGAGAAACGGCGCGAACTGAGACGAGCAGTCCGATATTTTAAACTCTAATATTCTTACAAAGTTAATGGATTTATTTTTAGCATATAACATaactctcccctttcatgtctaagctgccaaaaaataatcttaaaaaagaagaaaaacgaatatcttctgctacgtttctccctctcattccccctgctctggcgttt

Function

NR:

description
PREDICTED: ligand-dependent nuclear receptor-interacting factor 1

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801622.1 True 4501 mRNA 0.51 3 36610137 36625969

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-110g5.4 NA coding downstream 3369 36599573 ~ 36606768 (-)
igf3 LOC108228312 coding downstream 21425 36581523 ~ 36588712 (-)
plch2a plch2,LOC106935153 coding downstream 162345 36272871 ~ 36447792 (-)
LOC120559648 LOC103362257,LOC106633114,LOC101486280 coding downstream 340112 36253176 ~ 36270025 (-)
flna LOC100702302 coding downstream 1225908 35311194 ~ 35384229 (-)
stk35 LOC105921027,LOC108249422 coding upstream 154332 36780301 ~ 36804670 (-)
gmeb2 gmeb2,LOC102776727 coding upstream 224881 36850850 ~ 36866302 (-)
plod1a NA coding upstream 277108 36903077 ~ 36952279 (-)
LOC120559725 rpl22,LOC102779685,LOC106566811,LOC106572248,LOC100699599,LOC101484027,LOC102785448,LOC103376530,LOC102235575,LOC104936395 coding upstream 427818 37053787 ~ 37061695 (-)
tbc1d25 tbc1d25 coding upstream 530399 37156368 ~ 37172204 (-)
G55662 NA non-coding downstream 11865 36594225 ~ 36598272 (-)
G55664 NA non-coding downstream 14312 36593238 ~ 36595825 (-)
G55670 NA non-coding downstream 58250 36544954 ~ 36551887 (-)
G55666 NA non-coding downstream 67502 36540534 ~ 36542635 (-)
G55658 NA non-coding downstream 98479 36511359 ~ 36511658 (-)
G56167 NA non-coding upstream 31920 36657889 ~ 36699601 (-)
G56155 NA non-coding upstream 57671 36683640 ~ 36712643 (-)
G56190 NA non-coding upstream 126476 36752445 ~ 36752701 (-)
G56191 NA non-coding upstream 126788 36752757 ~ 36753054 (-)
G56195 NA non-coding upstream 130244 36756213 ~ 36756471 (-)
LOC120559361 NA other downstream 50178 36557530 ~ 36559959 (-)
si:ch73-70k4.1 NA other downstream 711401 35874622 ~ 35898736 (-)
G55492 NA other downstream 1200371 35404604 ~ 35409766 (-)
LOC120559165 NA other downstream 1332283 35269896 ~ 35277854 (-)
ntsr1 ntsr1,LOC103361890,LOC104959625 other downstream 2319068 34236566 ~ 34291069 (-)
G56160 NA other upstream 55930 36681899 ~ 36724209 (-)
LOC120559655 mtch1,LOC102799640 other upstream 97269 36723238 ~ 36744132 (-)
rhoaa LOC106529366,LOC107558917,LOC102777028,LOC107687289,LOC103367639,LOC107599000,LOC103384870,LOC106572042 other upstream 258834 36884803 ~ 36895540 (-)
phc2a LOC103367632,LOC102778931,LOC100708466,LOC102197996 other upstream 358916 36984885 ~ 37001151 (-)
G56335 NA other upstream 746666 37372635 ~ 37373316 (-)

Expression


Co-expression Network