e2f1 (e2f1,LOC102780950)


Basic Information

Item Value
gene id e2f1
gene name e2f1,LOC102780950
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 31128228 ~ 31141874 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801623.1
CGAGCCTTGTTTAGATGTAGATCAGCTGggacaataacaacaataatagccGATAACGGGGTCGGACGGGGTCGCAGGAGGCTTTTATAAATGGACCGCGCCCGGTGTGAGCAACTGACGGACCAGCAACTGCTGTTTTAAAGGATTCGCGTGATTTCATCGGTTTATTTCCTTATATTTCCAGTTTTGTCAGAGTGCTTCCTGCGTGCCCCAACAAAACGAGGGGGTTGAAGAATTGCGGCTAATAACTCAGCTAGCATGCTAATCTGTcctatatttttaaatttaacaatatcgCTTTATACTCCGCTGAACTAACTGTCGCTTTATTACACGTACTCTCAAAAATGCTTTTAAGTTATGGTAATGTATTTTGCATTGTGGATATTTTATTTCGATAGCTCACTCCTGGAAATGCTGCTATAAAGTTTTGATAGCCATTTAACTGAGCCCCGTCTTAGGTGTAAATAGAAATAATATTGTTTTATACACTTAAATAGCTAGTTTCTCGGCTGCACCGGGTTGTTTGTTAACTTGTGTCCGTCTTTGTTGTCAGGACATAAGCTAGCTCGTTAGCAGTGTTGGTAGTTGTGTTAAGGGCAGTGTAGCCAGGCCTCGCGGCTGTACTGTACTACCAGGAGAGATGAAAACAAAAgattagcttgctagctcgctAACCAACAGCGTTTATTTCTGCCACGGCCAATTTGCGACTCTTCTTTGATAATATATCAGCGGCTGAGCCTCAAGGCGCAGAGTTGGTATGCGTTTAGCAATATTGTTTTCTCTGCCAAATTAGCTTTTTGGCAGAAAAGCCTGTCTTGCTGTTTCTCCACCAGCCTAAAATAATGTTTCACCAGTTAGCTAACAATAAGTTATCATATATGTTTAAGTAATGTTGTTAGTCAGAATTCATTTGTAGTAGATTGTTTATAAGCAATAAGATGGACAATAGAGAAAGGGGaactttttaaagaaatgttcaAGCTGCCTATGAACACCTTCAGGCAAACTTTTAGAAGGTTTCATTATTGTTCCTTAAAttacagtacagaaaatcctagTGGGTGTTGATACATCTTAGTTTGCAACCCCTAAAGTCCAGTTGAAGGGGTGCTCAGTGACACACTGCAATGTCAGAGACTCTGATAACAGGGCAGACATCGGAGGATCTGTTGGCTGACTTTGAGACTTTGCTGAACTCTGGGACTATTGACCTGGGTGGGGACCATCAGATAGTGATCATCACCAGCCCCAGCAATGAGGGACTCCACCCGGCCGCGGCCCCCACCAGCACAGGGGAAATCCTGCTGTTTGCCACGCCACAGGGCCCTGTTGATGTGGGGGTCCAGGACAGGAGACGACCGGCTCTGGGAAGACCTCCGGTAAAGAGAAAGTTGGACCTGGATAGTGACCATCAGTATGTCAGCACTACTCGACCGTCCATAGGCCCAGCACCACCCTCCACACCTGCCCCTCCCAGAgtTCCTCGAACCACGACGGAGAAGTCACGCTATGACACTTCCTTGAACCTGACCACCAAGCGCTTCCTGGACCTGTTGTCCCAGTCGGCTGACGGTGTGGTGGATCTGAACTGGGCTTCGCAGGTCCTGGATGTCCAGAAGAGACGCATCTACGACATAACCAACGTCCTGGAGGGAATCCAGCTCATCTCCAAGAAGTCCAAGAACAACATCCAATGGCTTGGTAACCGAGTTGATGCGGCATTGGTTGCCCGCCATAAGGAGTTGCAGAGGGAGGTGTGTGACCTCACAGAGGCGGAGGAGCAGCTCGACGAGCTCATTTCCAAATGCAACCTACAGCTCAGACTGCTCACAGAGGACCCACAGAACAAGAAATTGGGCTACGTGCGCTGCCAGGACTTAAGAAATTCATTTGATTCCCCGGACCAGCTGGTCATGGTTATCCGAGCTCCACCAGAGACCCAGATGCAAGTTTCAGAACCCAGCCAGGGTTACCAGGTGTCGTTGAAGAGCACACGGGGTCCAATTGACGTCTTCCTCTGTCCAGAGGACAGCTCCGGCGTCTGCAGCCCCGTGACAGGAAGTAGTCCCTCTAAACCCAATGCTGACCCCTCCCTGGTGCCGCCTCCCACAAAACCCACAGACCAATCACAAGCCAGAACGTCCACAACAGCCCTGGAAGAGGGTTTATCATCACCAGCGTCCACGTCATCCACAGTGACAGCAACCTCCCAGCAGGACCCCTCATCACTGGTGTTAGGTGGGGACACAGAATCGCTCCTGGGAGGCGACCCCTTCTCCAACCTCGGAGACATGCCCGATTTTGACCTCTCACCCCTCTCCTCGGCGGACTTCCTGAGTGGAGATGGCCTTCCTCTCCCACTGGACGGTTTTATCAATCTGTCCCCCCCACACAGTCACGACTACCACTTTGGACTGGAGGACCATGAAGGCATCAGTGAATTGTTTGATTGTGACTTTGGTGACCTATCACATGTTTTGGGGGACAGTTAGATGAAGAAGACGAGGGGGAGACGAGAAGCATGTGTGGGCGTCTAGATTTCGGACTTTTCCTCTGTTCTCTGGGGCTTCTAAAAGAGGCCTTGAAATCAAAATGTtatgggcaaaaaaaaaaacaattttaattttttacttGTGCAGTTTGGGAAAAATGTTTTGTGTAGTAATTGCCTGTGATGCTCAAAATGCCACCCTAACTACAACATCTCAGTCCCCAAAATTGTACAGCACATTATTAGCACTTCTCTTTGGCCATTTAAGTTTTAGATCCAGACTTCAGCTTTAGTAtagctatttaaattatttatatgaatgttattttgatattttgtaCGAAGtgcgttttttttgttgctattgATAATGTTTTATCCAAGTGGATTGTgcaggtgtttgtgtgtagagtATGGACTCATGGGGCTGGTTTCCTTAACACTGATTACCTTCATGCTACTAATTCATAATGCTGGTTTTTAGACGCCTCAGTCTCCAAAGGGGAAAGGTTTGCATCCCACTGCTGTGCTGCGTCAATAAAACCGGCATTATGAGGAGTGCAGATTCAGTGCTGAGCTGTCAAAAAGCGTCTCGGAGCTGCAGCGCAGTTTCACACTTTCAGTAGTTTTCCCCACAATGACAGAGGTCATTATAAGCACAAAAGTAAAGGCTTCTCCATTAAtaatttgttttatctaaaacaCTGGAATCCTAACAGAATGGTTTCTCTAATGTCACTGTGTATGACAGTGACACTCAAGGTATCATTGCCCCCAACTTTTAATGACTAGATTTGTAGATTTGCACGTTTTACTGTCTCCGACAGTGGATTAACAAGGATTTGTAATAAATAACTAATTAGCAATTTTTAATTGCCCTCGAAACCCACTGACCAACAGATGGGCTGTCTTTACAAGGATGTAAATATTTATGTGGAAAATGAACACAAACAAGAACTTAGATGCTTTTGGGGAGCTTGACTCTCATCTTTCTTCAAATAAATGGTAGCGTAAAGGGTTACCATGACATTTAGAATTTTCATAACTGTTCTTCGAAAGACATTTCCAAAGGTAGAGACTCCACGGTGTGACCAATAATGTAGGTTTGAAGGAAAAAGAAGCAATTCCAACCTTAAAGGTCCAGATGTATTTTGTCGGTGTGCAGGAAACCAGGTGATGATAGTCTGCTACAGGTTTGCTAGTGATGAAAAACTAATACTGAATATGTTCTCTATTAGTTAGCTAGGCGTTTAGCCATAGTCTCAGGTGTTTGGAGCAGAGTAAAGTCTTAAATCAATGTTTTTGATGCAAACATGTATGAGAGTGGAAATGTTTTGGATGCATTTCGTGGGTCTTGTGTAGGTCGGTAATAGGTATTTACAGGTTTAGAAAATTCTGGAAGAAGGTGcatgctttttgtttttagccAAGGGTTCAAGTGAGAAAAGTTCACCAGATGCCCGTAGACTAATGCTCCCAAAACCACCCGACTGTTGTTGTCATGCGGAGAAGCTCCAAGCAGGTCCGAAGCCCAGACACACAGTTAAAGAAGTTCAATAGATCCTCACGGACCATACACTCTTCATTGCATGTTTTAAAAAgcattcagtgtgtgtgtgcgtgtgttttttttaaaagctgcatCTTTTCTTTTAGCAGTCTAAGTGGTGTAGAGCAGTGATGACTTTAGAAAAGGGTTAAGTGGAAGCGATGGACTTTTTGATAGGAATTCAAAACAGGGACATGCTGTTGTTCATAATTTGCACTTCAGATCAGTTGAGAAAGTTAATGTTCATGCCTTAAATCAATGACCTCTACCAGGTAAAGGGAGGTACCTGGGATATCTTATCTCAGCCCCAAAAGGATCAATTCCTTCTTGTTTTTCTACGATAGTCACATCAGGCTCCGTCTTCACGTACTACAAACGTACATGCCTTGGTCCTTTGGGAAGCACATTGATTTTCAGTTTAAATAAGCAGCAATAACAAAGACATTTTTACATCATGCACTCAGAGTATGAGATGAAAAACTGTCCTGCTACGTGTCATGTATTGTCTTAGTTAGCAATGTCTGcgtcaaatctttttttcttgttctaAGTTATGTAAGCTAAAGTATTGGGTtttaatgtgtctgtgtgtgtgtgggggtgcatgtgtgttgaaaatacaaattgttttgttgaatttcatatttatttaagaaaaaaaggggTCAATAGAAAAAATGGTACACTTGGTACATTCATTTTCTGGCAGTGACTTAACACCTATTCCATCACCAAAGAGgttgtgataataataataataataataagaggcAACGCTCACGTTACTGGAGTGTCACCTCTTACTATTATAACCTCTTTGCTTTAACTTGTTAAATCCAAGCAAATCATTCGTTGATAAATGTGTCCTTCAGTGGTGAAAAGAAGTGTTTTATTTGTAAATGAGCTTCTCGTCAGTAGCACATTTATATTtagagatttttttaaatttccctTATAGAGAATATATTTCCCCGTCTTACCTGTTGTGCTTCTGCAACCTTTGCGTTGGCTTAtgatgcaacaacaaaaaattcaggaatacatttatttgtcattttgacTGAACCGACTAATGTGTGTAATTCTTCATACCTTCTTTAGTCACGGCCTTCTCTCCCAAATCAGTTTAGATGATGGATATTTCCATGTTGCAAGCAACCTAGCTAATCGAAGGTTGTACACGTATCGTAGTGTAGCCTTCGGGTGCCTCAAACTGtcatgtgagtgtgtgaaaaCTTTATAACTACAGCCATCTTTTATTTCCTTTATCTTCAGGTCTGTGGAAACCATAACATAATGCATAATTTCAACAGCTTCTGAACATGTTTCAACTGACAGCGGTGGTACAAGCCACTAAAATTTTAGGCTCCTTTAGTCACCCTTAGAATGTATATGGCATTTTTTTcgtctttctctgtgtttaaCTTCCAAACTGAGCGACATTGTTGTTGAATGTCAGCAGTTCATGTTGTCAACCTGTCATATGTTGCATCGTGTTTCTGTTCTCTGCAGGACAAATGCAGTGCCTTGTTAAGGTAGAATCTTAATTGTTAATTAAATGTCAAATCAGGATTTTGTTTCGTGTGCAGCCGTGGTGAAAGAATGCAGTGTTTTCAGGTGTTTTGTGTGAAAACGTTTTAAGTGAAGATAAGCACCAGGGTTGAAATCAAATCACCTtcagttaatttttttattttatttttaaactcgTTATAAGAAAACTATATAAGATTGAGAATTGTAGGAATAAAAAAAGCACGAATGAATTCAGTTTTATACAAAGGTGACTTCATGTGTTGAAGTCACTGCGGGGTACAAAAAAGGTTTACAAGTGCAATCTGCTACATAATTGTGGTTTAACAGACCTAAAGTGAATTGACTTCAATCCTGATTCAGTCGCTATTCAAAGTGCTTTTAAGAGAAACCGTAGCTTATCCAGCAACTTAACAATCAATaaatttttttgtgtcttttctacaaaaaaaaattgtctctACATACTGGGTAAAACAAATACAGATTTGTACTTGTGAATTATTAATGAGCCCCAATATGCCCTTTTGTATCAAATTTTctttgacaaaaataaaaaaattaactatTTTGATTTGA

Function

symbol description
e2f1 Predicted to enable DNA binding activity; DNA-binding transcription factor activity; and protein dimerization activity. Acts upstream of with a positive effect on activation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma; lung small cell carcinoma; lung squamous cell carcinoma; pancreatic adenocarcinoma; and pancreatic ductal adenocarcinoma. Orthologous to human E2F1 (E2F transcription factor 1).

NR:

description
transcription factor E2F1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K17454 E2F1; transcription factor E2F1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801623.1 True 6158 mRNA 0.42 7 31128228 31141874

Neighbor

gene id symbol gene type direction distance location
LOC120558334 NA coding downstream 3137 31113760 ~ 31125091 (-)
ctnnbl1 ctnnbl1 coding downstream 70652 30988074 ~ 31057576 (-)
LOC120559110 vstm2l,LOC101479893,LOC102782703 coding downstream 147052 30928243 ~ 30981176 (-)
zgpat zgpat,LOC102796033 coding downstream 225320 30896977 ~ 30902908 (-)
tmco4 tmco4,LOC102793724 coding downstream 469336 30650112 ~ 30658892 (-)
itchb itch,LOC100697163,LOC101474118,LOC102781723 coding upstream 20645 31162519 ~ 31191356 (-)
trnaq-uug_1 NA coding upstream 85186 31227060 ~ 31227131 (-)
LOC120559902 twist3b,LOC104929895,LOC103352822 coding upstream 323894 31465768 ~ 31469785 (-)
LOC120559355 klf15,LOC103367789,LOC101076255 coding upstream 1240010 32381884 ~ 32392543 (-)
cpne9 cpne9,LOC100694516,LOC101469997,LOC102776939 coding upstream 1271190 32413064 ~ 32511065 (-)
G54509 NA non-coding downstream 30043 31097980 ~ 31098185 (-)
G54508 NA non-coding downstream 63256 31064741 ~ 31064972 (-)
G54470 NA non-coding downstream 239010 30889018 ~ 30889218 (-)
G54444 NA non-coding downstream 342431 30785093 ~ 30785797 (-)
G54414 NA non-coding downstream 421467 30655670 ~ 30706761 (-)
G54549 NA non-coding upstream 93373 31235247 ~ 31235474 (-)
G54567 NA non-coding upstream 205407 31347281 ~ 31350577 (-)
G54599 NA non-coding upstream 349682 31491556 ~ 31527860 (-)
G54600 NA non-coding upstream 356903 31498777 ~ 31500889 (-)
G54609 NA non-coding upstream 481247 31623121 ~ 31623330 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 1055529 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 1362355 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 1635253 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 1772344 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 2098907 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 1151068 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 1449109 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 1625483 32767357 ~ 32773486 (-)
G54834 NA other upstream 1738319 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 1824761 32966635 ~ 32971163 (-)

Expression


Co-expression Network