LOC120559725 (rpl22,LOC102779685,LOC106566811,LOC106572248,LOC100699599,LOC101484027,LOC102785448,LOC103376530,LOC102235575,LOC104936395)


Basic Information

Item Value
gene id LOC120559725
gene name rpl22,LOC102779685,LOC106566811,LOC106572248,LOC100699599,LOC101484027,LOC102785448,LOC103376530,LOC102235575,LOC104936395
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 37053787 ~ 37061695 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801689.1
AACGAGCGGGATGTGATGACCGATGTGTTACAACAATCTGGGTCCAAATACAGGAAGAAGCAGAACACCGGCAAAGGTGGTAAAAAGAAGAAGCAGGTCCTGAAGTTCACACTGGACTGCACCCATCCTGTGGAAGATGGCATCATGGACGCTGCCAACTTTgaGCAGTTTCTCCAGGAGCGCATCAAGGTGAACGGGAAAGCGGGCAACCTGGGTAACGGTGTGGTCTCCATCGAGAGGAGCAAGAGCAAGATTACAGTGTCCTCCGAGGTGCCTTTCTCCAAAAGATACCTCAAGTATCTGACGAAGAAGTACCTGAAGAAGAACAATCTTCGGGACTGGCTTCGCGTCGTGGCCAACACCAAGGAGAGCTACGAGCTCCGCTACTTCCAGATCAaccaggatgaagaggaggaggaagacgaaGATTAAATTGACAATTCATCAGATTttgtacatttaaataaatgttgtttACAGTACAGAA
>XM_039801690.1
TTTGTTAATCAATCTCAGACGCACGGATTCAATCGATGGTTCGGCGTTCGATTCGTATACGTGGCGCATGCGCACGGCCCGTTCTTCCTTTCTGCTAGCTTCTCCGCCATGGCGCCTATTCAGAAGAAGCAGAACACCGGCAAAGGTGGTAAAAAGAAGAAGCAGGTCCTGAAGTTCACACTGGACTGCACCCATCCTGTGGAAGATGGCATCATGGACGCTGCCAACTTTgaGCAGTTTCTCCAGGAGCGCATCAAGGTGAACGGGAAAGCGGGCAACCTGGGTAACGGTGTGGTCTCCATCGAGAGGAGCAAGAGCAAGATTACAGTGTCCTCCGAGGTGCCTTTCTCCAAAAGATACCTCAAGTATCTGACGAAGAAGTACCTGAAGAAGAACAATCTTCGGGACTGGCTTCGCGTCGTGGCCAACACCAAGGAGAGCTACGAGCTCCGCTACTTCCAGATCAaccaggatgaagaggaggaggaagacgaaGATTAAATTGACAATTCATCAGATTttgtacatttaaataaatgttgtttACAGTACAGAA
>XM_039801692.1
TCAGACGCACGGATTCAATCGATGGTTCGGCGTTCGATTCGTATACGTGGCGCATGCGCACGGCCCGTTCTTCCTTTCTGCTAGCTTCTCCGCCATGGCGCCTATTAAGAAGCAGAACACCGGCAAAGGTGGTAAAAAGAAGAAGCAGGTCCTGAAGTTCACACTGGACTGCACCCATCCTGTGGAAGATGGCATCATGGACGCTGCCAACTTTgaGCAGTTTCTCCAGGAGCGCATCAAGGTGAACGGGAAAGCGGGCAACCTGGGTAACGGTGTGGTCTCCATCGAGAGGAGCAAGAGCAAGATTACAGTGTCCTCCGAGGTGCCTTTCTCCAAAAGATACCTCAAGTATCTGACGAAGAAGTACCTGAAGAAGAACAATCTTCGGGACTGGCTTCGCGTCGTGGCCAACACCAAGGAGAGCTACGAGCTCCGCTACTTCCAGATCAaccaggatgaagaggaggaggaagacgaaGATTAAATTGACAATTCATCAGATTttgtacatttaaataaatgttgtttACAGTACAGAA

Function

symbol description
rpl22 Enables RNA binding activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in ribosome. Is expressed in intermediate cell mass of mesoderm. Orthologous to human RPL22 (ribosomal protein L22).

NR:

description
60S ribosomal protein L22

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02891 RP-L22e, RPL22; large subunit ribosomal protein L22e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801689.1 False 487 mRNA 0.48 4 37053787 37061509
XM_039801690.1 True 556 mRNA 0.49 4 37053787 37061695
XM_039801692.1 False 539 mRNA 0.50 4 37053787 37061681

Neighbor

gene id symbol gene type direction distance location
plod1a NA coding downstream 101508 36903077 ~ 36952279 (-)
gmeb2 gmeb2,LOC102776727 coding downstream 187485 36850850 ~ 36866302 (-)
stk35 LOC105921027,LOC108249422 coding downstream 249117 36780301 ~ 36804670 (-)
lrif1 NA coding downstream 427818 36610137 ~ 36625969 (-)
si:dkeyp-110g5.4 NA coding downstream 447019 36599573 ~ 36606768 (-)
tbc1d25 tbc1d25 coding upstream 94673 37156368 ~ 37172204 (-)
LOC120559612 LOC103363412,LOC108249421,LOC107391357 coding upstream 158839 37220534 ~ 37254041 (-)
mthfr mthfr coding upstream 235810 37297505 ~ 37329403 (-)
LOC120559054 NA coding upstream 1012722 38074417 ~ 38077028 (-)
LOC120559055 NA coding upstream 1018186 38079881 ~ 38082216 (-)
G56250 NA non-coding downstream 28432 37024934 ~ 37025355 (-)
G56245 NA non-coding downstream 73451 36975594 ~ 36980336 (-)
G56235 NA non-coding downstream 106865 36911088 ~ 36946922 (-)
G56213 NA non-coding downstream 174628 36870769 ~ 36879159 (-)
G56215 NA non-coding downstream 255591 36797443 ~ 36798196 (-)
G56265 NA non-coding upstream 4970 37066665 ~ 37118456 (-)
G56279 NA non-coding upstream 41041 37102736 ~ 37118149 (-)
G56291 NA non-coding upstream 83639 37145334 ~ 37147442 (-)
G56275 NA non-coding upstream 168759 37230454 ~ 37230861 (-)
G56305 NA non-coding upstream 178222 37239917 ~ 37261393 (-)
phc2a LOC103367632,LOC102778931,LOC100708466,LOC102197996 other downstream 52636 36984885 ~ 37001151 (-)
rhoaa LOC106529366,LOC107558917,LOC102777028,LOC107687289,LOC103367639,LOC107599000,LOC103384870,LOC106572042 other downstream 158247 36884803 ~ 36895540 (-)
LOC120559655 mtch1,LOC102799640 other downstream 309655 36723238 ~ 36744132 (-)
G56160 NA other downstream 329578 36681899 ~ 36724209 (-)
LOC120559361 NA other downstream 493828 36557530 ~ 36559959 (-)
G56335 NA other upstream 310940 37372635 ~ 37373316 (-)
G56376 NA other upstream 507365 37569060 ~ 37839849 (-)
LOC120559227 esd other upstream 820473 37882168 ~ 37900343 (-)
G56436 NA other upstream 864499 37926194 ~ 37940548 (-)
LOC120559229 NA other upstream 938307 38000002 ~ 38046669 (-)

Expression


Co-expression Network