mapk13 (LOC104963623,LOC104919509,LOC106518909)


Basic Information

Item Value
gene id mapk13
gene name LOC104963623,LOC104919509,LOC106518909
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29947906 ~ 29959771 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801700.1
TATTTAAGCAGTATTTGCTTTACCTTCTGAACAAGTGACAGGCTTACAggaggaactttttttttctagctTCGCCTTCTCCTCTTGATCATGGAGGCTCGGGCACATTTCTCCCGTGAGGAAATTAACAGCACGGTGTGGGAAGTCCCGGAGAAATACACACGGCTCAAACAGATAGGGACCGGGGCGTATGGCTCTGTATGCTCAGCAATAAATGAGAAGACTAAAGAGAAAGTGGCCATCAAGAAGCTCCACAGGCCCTTCCAGTCAGAGATCTTTGCTAAGAGGGCCTACCGAGAGCTCCGACTGCTCAAACACATGAAGCATGAAAATGTGATAGGACTTCTTGATGTGTTTTCACCTGCCTCAAGCCTTGAAGAAATGCAGGACTTcTACCTGGTGATGCCTTACATGTTTACTGACCTGTCGAAAGTGCGAGGTCATCTCACAGAAGACAAAGTCCAGTTTCTCGTCTACCAGATGCTCTGTGGACTCAGGTACATTCACAAGGCTGGAATCATCCATAGGGATCTTAAGCCTGGAAACTTGGCTGTAAACCAAGACTGTGAACTGAAGATCCTGGACTTTGGGTTGGCTCGCAGTACTGATGCTGAGATGACAGGCTACGTGGTGACACGTTGGTACCGGGCACCTGAGGTCATTCTGAACTGGATGCACTACACCCAGACTGtggACATCTGGTCTGTGGGTTGTATCATGGCAGAAATGATCAATGGAAAAACCCTTTTCAAAGGAAGAGACTACATGGACCAGCTGACTCAGATCATGAAAGTGACTGGAGTACCTGGAGCAGAGTTCATACAGAAGCTGGACAGTCCAGAGGCCAAAACGTATGTTAAGGCCCTTCCTCGCTATCCCAGAAAAGACTTCTCAACATTGTTCCCCAGAGCCAGTGCAATGGGTATCGACCTGCTGGAGAAGATGCTGGTTCTGGACGGAGACGAGAGACCCACAGCCGAACTAGCTCTGGAGCACCCATATTTTGACAGCCTCAGGGACCCAGACGACTTACCTAAACCTGCGCCATATGATGACAGCCATGACAACGCCACATTGTCCCTGGATGAGTGGAAGCGGTTATGCTTCagagaggtgaacagctttgtGCCATTCCCACGGCGGGACTCCAAGAGAAAAAACACGCTGACTATATCTCCGTGACCTGACGAATGTCTTGTAGCGCTGATGCCCTAACCTACACAGCATACAGCCAATGGTGCCCTTGTATATTCCAACCATGGATTCTTTTACCCTGGATATAATTTAGATTTTGAAGAGTGGTTATATTCAATTATTTTGTGCAATTGTTTCCTAAGTGTTACATATTCCCTATCAGTGAATTGTTTCGCAAATGTATTGTGACCAAATGTCACAGGGTTTACTGTAATATTgttttacaattaaaaaaaattagacaAGATGTGTACAACGTTTTGTTTTTGCGGTAAATAGTAAATGTTACTGCCCGAGAGAGTGCAATCTTGAggtaaaaacagcattttttttttttaaataccttaTTCATGATAATTATTATAAAGGGACAAAGTCTGTAGTTTGCCAATGAATACCCTGAAGACCAGCAAAGGCCAAAAATAAATAGCAGTTACTGTGTGAATCTCTAATATGTAACCAGTGTCAGCTGGAATATGTGACAACGAAGGTGTGTATGATGCTGAAAGCAACTAGTTGTTTTATTCATGTCTCTGCTTGTATCACTTTGTAGTTCTTCACTTAATTACTAAAAAACCCTTCACACAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K04441 P38; p38 MAP kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801700.1 True 1782 mRNA 0.44 12 29947906 29959771

Neighbor

gene id symbol gene type direction distance location
brpf3b LOC100699843,LOC106518910,LOC103372699,LOC104963634 coding downstream 1673 29928188 ~ 29946233 (-)
bcas2 bcas2 coding downstream 96952 29846882 ~ 29850954 (-)
tmem240a tmem240,tmem240a,LOC108275582,LOC107593924,LOC107687438,LOC106572021 coding downstream 110379 29822872 ~ 29837527 (-)
LOC120559846 sdhb,LOC101478036,LOC102293590,LOC100705239,LOC102211954 coding downstream 137333 29806794 ~ 29810573 (-)
atp13a2 NA coding downstream 142924 29783406 ~ 29804982 (-)
mtor mtor coding upstream 143460 30103231 ~ 30199840 (-)
LOC120559739 rnf223 coding upstream 581730 30541501 ~ 30547082 (-)
dennd2c NA coding upstream 603789 30563560 ~ 30585652 (-)
ampd1 ampd1 coding upstream 627738 30587509 ~ 30603153 (-)
csde1 csde1,LOC102790132 coding upstream 652322 30612093 ~ 30630548 (-)
G54272 NA non-coding downstream 45186 29900560 ~ 29902720 (-)
G54189 NA non-coding downstream 125089 29822520 ~ 29822817 (-)
G54185 atad3a,LOC103366266,LOC105898932 non-coding downstream 132456 29814350 ~ 29815450 (-)
LOC120559594 NA non-coding downstream 269102 29676371 ~ 29678804 (-)
G54038 ddost,LOC107687429 non-coding downstream 424444 29521790 ~ 29523462 (-)
LOC120559738 NA non-coding upstream 536269 30496040 ~ 30500331 (-)
LOC120559660 NA non-coding upstream 659495 30619266 ~ 30619890 (-)
G54407 NA non-coding upstream 674161 30633932 ~ 30635350 (-)
G54414 NA non-coding upstream 695899 30655670 ~ 30706761 (-)
G54444 NA non-coding upstream 825322 30785093 ~ 30785797 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 182033 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 454931 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 592022 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 918585 28971286 ~ 29029321 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other downstream 1761379 28153182 ~ 28186527 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other upstream 11425 29971196 ~ 30072699 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 2333171 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 2631212 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 2807586 32767357 ~ 32773486 (-)
G54834 NA other upstream 2920422 32880193 ~ 32887290 (-)

Expression


Co-expression Network