LOC120559739 (rnf223)


Basic Information

Item Value
gene id LOC120559739
gene name rnf223
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30541501 ~ 30547082 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801722.1
TCAACACTATTTGCATAAGGTGCTAAAAGGGGAGCTGACAGAGCAGGGCAGTTGATACTGGAAAGTGGACACAGGAAGGAGGACCAAGAGCTGATACAGGAAGCTATCACAAACACAGCCTCTGAGCACACacccacttacacacacacacacacacctgtgactCCAGCAGAGTATTCATTCAGACCGGTACAGAGAAGGACCTTGGCCTGAACAGAGGCACAATTAAAACACCAAACTCCCTGCCGGCATTCCAGAAGTCAGTTGACTTTGActccagaaaaatgcattttggAGTGGAAAGGGAGTAAGCTGAGcccagagagatagagaggatcATCTGACATCTTCTTCAGTTAACAGATAATTCAGAAGTTAAGGACAGACCaagaagaggaaaggaaagggcAGACAAGTCTAAAGGAGATTCAACAAAGGAGAGGGTAGGCTTATATTTCCGAAGATGGAACAGTCTCCGCAGTTTTGGCACATGCAGGTCGCCCCCCAGGACACTGCTGGAGAGCTAAAAAAGAAGGTGTCAGCCGTGGGCCAGCCTGAGTGCTCCATCTGCTACAACACCTACGACAATGTCTTCAAAACCCCCAAGCTGCTGGAGTGCACCCACACCTTCTGCCTGGAGTGCCTCTCCCGCCTCATGGCAGTCTCGGTGGCTGACCATGACAGTGACAGCGCCAGCACTCGCCTCTCTTGCCCCTTCTGCCGTCACCCCACCACGCTGCCTGAGGAGGGACCCCCGGCCCTGACAACCAGCCGCGAGGTCCTCTGCAAGTTGCCCAGCCaccagcagcaggagcagccaGTGTGGCTGGAGGGGGAGAAGCTGTGCTACAAAAGCCTCAAGCACGACACCGGTGCAGGGGCCCGTGATAGTCCCACGGCCTTCTGCGTCTGCATTGACATTGGGGCCAGCAAGACAATGGATGCTCCGATCCAGACGCAGCCCCGGACTTTTAGCCTGATGGGCCGGCTGGCAGACTGGAAGAGGATGGTGCTTTTCATCGTGCTCATGCTGCTGCTTGTTGTAGTTGTGTTGTGGCCATTGCAGTGTATGTTCAGCACTGGGAACATGCGCTGTGAAAGTGTGAAACAACCCGTCAACCCCACTGCCACAACGACAGCTACCACTACTTTCAGCCGGTTCCCAGGCTACCAGGCCGGCCAGAGATAGGCTAACTTATAGACTGGACTTCACTGTTACTGAACATAATCTTGTATATGGCACATTTGACATCAACATTTTTGTGCATAGTTGCACTTTTGCTTAGTGTAGGCTACAATGTTATTGCCACCCACAACTGTCAACACCTCAGGCTCGTTAGATGTCTGACTTTTGTGCCCCCAAGTGTTGGGTTCAAGCGCGACACTGTGGCATACTTTACCACAGAGATTAAACCATTTTTACTGAA

Function

symbol description
rnf223 Predicted to enable metal ion binding activity. Predicted to be integral component of membrane.

NR:

description
PREDICTED: RING finger protein 223

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801722.1 True 1427 mRNA 0.52 2 30541501 30547082

Neighbor

gene id symbol gene type direction distance location
mtor mtor coding downstream 341661 30103231 ~ 30199840 (-)
mapk13 LOC104963623,LOC104919509,LOC106518909 coding downstream 581730 29947906 ~ 29959771 (-)
brpf3b LOC100699843,LOC106518910,LOC103372699,LOC104963634 coding downstream 595268 29928188 ~ 29946233 (-)
bcas2 bcas2 coding downstream 690547 29846882 ~ 29850954 (-)
tmem240a tmem240,tmem240a,LOC108275582,LOC107593924,LOC107687438,LOC106572021 coding downstream 703974 29822872 ~ 29837527 (-)
dennd2c NA coding upstream 16478 30563560 ~ 30585652 (-)
ampd1 ampd1 coding upstream 40427 30587509 ~ 30603153 (-)
csde1 csde1,LOC102790132 coding upstream 65011 30612093 ~ 30630548 (-)
tmco4 tmco4,LOC102793724 coding upstream 103030 30650112 ~ 30658892 (-)
zgpat zgpat,LOC102796033 coding upstream 349895 30896977 ~ 30902908 (-)
LOC120559738 NA non-coding downstream 41170 30496040 ~ 30500331 (-)
G54272 NA non-coding downstream 638781 29900560 ~ 29902720 (-)
G54189 NA non-coding downstream 718684 29822520 ~ 29822817 (-)
G54185 atad3a,LOC103366266,LOC105898932 non-coding downstream 726051 29814350 ~ 29815450 (-)
LOC120559594 NA non-coding downstream 862697 29676371 ~ 29678804 (-)
LOC120559660 NA non-coding upstream 72184 30619266 ~ 30619890 (-)
G54407 NA non-coding upstream 86850 30633932 ~ 30635350 (-)
G54414 NA non-coding upstream 108588 30655670 ~ 30706761 (-)
G54444 NA non-coding upstream 238011 30785093 ~ 30785797 (-)
G54470 NA non-coding upstream 341936 30889018 ~ 30889218 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 468802 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 775628 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 1048526 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 1185617 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 1512180 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 1745860 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 2043901 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 2220275 32767357 ~ 32773486 (-)
G54834 NA other upstream 2333111 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 2419553 32966635 ~ 32971163 (-)

Expression


Co-expression Network