cpne9 (cpne9,LOC100694516,LOC101469997,LOC102776939)


Basic Information

Item Value
gene id cpne9
gene name cpne9,LOC100694516,LOC101469997,LOC102776939
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 32413064 ~ 32511065 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801739.1
tctggcagtccgtctctctctctatccctcctcCGCTGCTCCAGAAGGGAAACACCAGTGGGAGATTCTTCGACAATGGATTTACTGCAATCACGATCCTATTGTGAATGATCATcttttcttgttcttctttctttctttgcgGATGCTCATTAGCGTCGTGAGTCGAGATGATGGCATCAATAGGGGAATTCGATCCGCTCAACACCAGAGTCCCTGCAACTAAAATAGAAGTTACCGTTTCGTGCCGGAGTCTGCTGGATGTGGATACATTCTCCAAGTCCGATCCTGTGGTCGTGTTGTATTTGCAGGCCGTGGGAACCAAAGAATGGAGGGAGTTTGGCAGGACAGAGGTAATCGATAACACTCGAAATCCAGATTTCGTCAGAAAGTTCGTCCTGGATTTCTTCTTTGAAGAGAAACAAAATCTAAGGTTTGATGTGTACAATGTGGACTCCAGAAGCTGTAACATTTCCAAATACAAGGACTTTCTGGGTCAGACCTTTTGTACTCTGGGAGAAATCATCGGCTCCACAGGAGGGCGGCTGGAGAGGACTCTCTCTGGGATTCCAGGGAAGAAGTGTGGAATCATTATCTTTAATGCAGAGGAGCTCAGTAACTGCAGggATATTGCTACCATGCAGTTGTGTGCCAACAAGCTGGACAAAAAAGACTTTTTTGGCAAGTCAGACCCCTTCTTGGTTTTCTACCGGAGTAATGAGGATGGAACGTTCACCATCTGCCACAAGACAGAAGTGATCAAGAACACACTGAACCCAGTGTGGCAGCCCTTCACCATCCCTGTTAGAGCTCTCTGCAATGGCGACTATGACAGGACTGTGAAGGTAGATGTCTATGACTGGGATCGAGATGGAAGCCATGACTTCATTGGCGAGTTCACCACCAGCTACAGAGAGCTGTCTCGGGGCCAGAACCAGTTCAATGTCTATGAGGTTTTAAATCCCAAGAAGAAAGgcaaaaagaagaaatacatCAATTCTGGAACTGTAACTCTGCTGTCCTTCAAAGTGGAGTCCGAGTATACCTTTGTGGATTTCATCCGAGGAGGAACCCAACTGAATTTCACAGTGGCTATAGACTTTACAGCATCCAATGGTAACCCCTCCCAGCCCACCTCCCTCCACTATATGAGTCCCTACCAGATGAATGCATATGCCATGGCCTTGAAGGCAGTAGGTGAGATTATCCAGGACTACGACAGTGACAAGCTCTTTCCTGCCTATGGTTTCGGGGCTAAGCTGCCCCCTGACGGCAAAATCTCCCACGGCTTCCCACTGAATGGTGACGCTGAGAATCCAAACTGTGTGGGCATAGAGGGGGTTCTGGAGGCATATTTCCAGAGCCTGAGGACGGTGCAGCTGTATGGACCCACCAACTTTGCACCTGTTATCAACAAAGTGGCAAACTGTGCAGCAGAGATTACAGATGGCTCTCAGTACTTTGTCCTACTGATGATCACAGATGGAGTGATATCTGACATGGTGCAGACCAAAGAGGCTGTGGTCAATGCATCAGGACTGCCCCTGTCCATAATTATCGTAGGTGTTGGACCTGCTGAGTTTGACGCTATGGAGGAGCTGGATGGAGATGAGGTGAGAGTGTCCTCCAGAGGACGTCTTGCTGAGAGAGACATTGTACAGTTTGTTCCATTCAGAGACTACATTGACAGATCCGGCAACCAGGTCCTCAGCATGGCCCGGCTGGCTAAGGACGTCCTCGCGGAGATCCCCGACCAGCTGCTGTCTTTTATGAAGAGCCGAGGAGTTGAACCGCGACCGGCCCTCTCCACCTCGCCGCTACCGGAGCTACACCGGCATATCTGACACAGCCACGGCCACTCATGTCTGCCTCTCTAccctgactctctgtctctatctctctctctctctctcgctctctctctcccccttctgcTTATCTTTGTTCACTGCCCATACAGTTatttgtcactttaaaaaagGAGCAGAAGGATCGACCCGTGACttgtcctcttcctctctcatcACCGGTGAACAGGCACATCACAGCGACACAGCGGGCGCTCATCCCTGACTGACCCACTGCTGTTCTTCACCTTCTCTTCTCTAACTCCCCCCCCTGTTATATAGCTTTACTTTCCATTTACTGTATGAAAGAGCAGTGAGACTGAGCCATGACTGTCCCCCTTCCCCCCACTGACTGTCATTCAAAGCTtgacttttttaatttgtctgtTAATTCTCCATCACCAGGCACGTGTTCTGCgcagaaacgtttttttttttacatttgtgtccTTGTCCTCGGGAAGTGTTGACACTATAGTCACATTTGGCAGGAGTCCCAGGAAGTGCAAGACTTTAAATGAAATTGAAGCCAGTCCCAAATGAAAGCAGAGCTCTTGTTGAGCAATACACACCAGCTTGTATCAGAtgctttggggggggggggatttttgGCCGAGCTTTTGACTGTAATCCATTGGAGTAATTGGTCACCGTGAGGACAGGTGTGTGATTTATACTTTACCATCGTCATTATCAACACGCTATGCCAAatctttttaaaacttaaatagAGGCTGcccaaacaattattttaatccaGGGGTGTTTCAAGCTGTGAGGCGTGCGGGTGAGTTaaaagaggga

Function

symbol description
cpne9 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE9 (copine family member 9).

NR:

description
PREDICTED: copine-9 isoform X1

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801739.1 True 2651 mRNA 0.48 20 32413064 32511065

Neighbor

gene id symbol gene type direction distance location
LOC120559355 klf15,LOC103367789,LOC101076255 coding downstream 20521 32381884 ~ 32392543 (-)
LOC120559902 twist3b,LOC104929895,LOC103352822 coding downstream 943279 31465768 ~ 31469785 (-)
trnaq-uug_1 NA coding downstream 1185933 31227060 ~ 31227131 (-)
itchb itch,LOC100697163,LOC101474118,LOC102781723 coding downstream 1221708 31162519 ~ 31191356 (-)
e2f1 e2f1,LOC102780950 coding downstream 1271190 31128228 ~ 31141874 (-)
si:ch211-220i18.4 LOC103373814,LOC108233036,LOC102211047,LOC100693975,LOC102782987,LOC102291816 coding upstream 59243 32570308 ~ 32586963 (-)
LOC120558593 LOC106915442,LOC106565226,LOC103152765,LOC106947658 coding upstream 177822 32688887 ~ 32694442 (-)
krt8 LOC104959359,LOC106525573,LOC108233108,LOC107391340,LOC107088570,LOC100702817,LOC103152763 coding upstream 209768 32720833 ~ 32726627 (-)
tmem106c tmem106c,LOC108233084 coding upstream 381200 32892265 ~ 32903713 (-)
sars1 sars coding upstream 399693 32910758 ~ 32933014 (-)
G54684 NA non-coding downstream 3212 32409506 ~ 32409852 (-)
G54631 NA non-coding downstream 413992 31998533 ~ 31999072 (-)
G54629 NA non-coding downstream 420513 31992349 ~ 31992551 (-)
G54618 NA non-coding downstream 468799 31941687 ~ 31944265 (-)
G54609 NA non-coding downstream 789734 31623121 ~ 31623330 (-)
G54724 NA non-coding upstream 85507 32596572 ~ 32597493 (-)
G54731 NA non-coding upstream 164200 32675265 ~ 32675465 (-)
G54733 NA non-coding upstream 171097 32682162 ~ 32682516 (-)
G54734 NA non-coding upstream 172295 32683360 ~ 32686614 (-)
G54735 NA non-coding upstream 177140 32688205 ~ 32688638 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other downstream 89789 32292942 ~ 32323275 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 2340365 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 2647191 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 2920089 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 3057180 29350078 ~ 29355884 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 79918 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 256292 32767357 ~ 32773486 (-)
G54834 NA other upstream 369128 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 455570 32966635 ~ 32971163 (-)
lamb2 NA other upstream 1044735 33555800 ~ 33614940 (-)

Expression


Co-expression Network