LOC120559781 (chmp4b,LOC103362760,LOC106511320)


Basic Information

Item Value
gene id LOC120559781
gene name chmp4b,LOC103362760,LOC106511320
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26539900 ~ 26546310 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801795.1
GGAAGTAGAAAAACATCAACAATCCTTCCAGGTTTCTGGCTAGGGCGAAGTGTCAGTGTAGCCTAGCAGCGAAGTAGCTAAGCTTGATTTTCTTGGGGTTTTCgcagatttgttttattatttatttttataattagtGTAACGTTAACTGTAGCACTCCAGATATGTCGTTGTTTGGTAAGATatttggaggaggaggaaaaggaggaaagGGACCGAGCCCACAGGAGGCGATCCAGAAACTCCGAGAGACGGAGGAGATGCTAACGAAGAAACAGGAATTTCTAGAGAAAAAGATCGAACAGGAACTGCAAATTGCCAAGAAAAACGGCACGAAAAACAAAAGAGCGGCTCTGCAAGCTTTGAAAAGAAAGAAGCGGTATGAGAAGCAGCTCGCTCAGATCGACGGCACCCTGTCGACCATCGAGTTCCAGAGAGAGGCTCTGGAGAACGCCAACACCAACACTGAAGTGCTCAAAAACATGGGCTTCGCTGCCAAGGCCATGAAGTCTGCCCATGAAAACATGGACATTGACAAGGTGGACGACCTGATGCAGGACATTACCGAGCAGCAGGAGCTGGCCCAGGAAATCTCTGATGCCATCTCTAAACCTGTCGGCTTCGGAGAGGAGTTTGATGAGGATGAGCTGCTGGCGGAGCTGGATGAGCTGGAACAGGAGGAGCTGGACAAAAACCTGCTGGAGATCGGGGGACCAGAGAACGCCCCCCTCCCCAACGTGCCTTCTACTTCATTACCTTCCAGACCTGCCaagaaagaggaggatgaggacgaTATGGAGGACCTGCAGCGCTGGGCAATGGAAGCCATGTAAACGCAGCATCTGCCACATCATACCTGCATCAGAGAGGGAAGAGGAAGGAGCAAGGGGAATGAATGGACTGATAGGATGTTGTGTATGAGtatatttttgtgtgtctgaggAGAGCTGACTTGATGTAACACTACGAAAAAGCGAAAATGCTGTAGACTTTGTTTTCATGTCCCCTTCACGAATACAGAGAACCCTGGGTGCTCAGCCAACGAGTCAGTCAGGGGCTTTTATATTGAAGCTCTGTCACTGTACACAATATTTTTACCCTCAATTTTAACACAATACTAGCAATTAATGGTCATTGACTGGGCAGGGCTATTTCAGCACCCACAGAGTTCATAATGAGGTGTAATAATATGAGCTCTGTGGTGCAACAACGGAGTTGTTGTCAGATTAGTGTTACAGACTGCCTGCCATTGCTAACGTCTCTGGATGACCGGGGGAATTTTCATGGGGGATAATCCTCAAAGATCCGTTTCCGACTCACATATTTACCTGTGTTTGTGGCGTTAAACTGGCtcgatgtttgtttgtttttccttcttGACAAAAATAACAGTCCTTTGCTCTCTGTTTTTTGTTAATGCTGTTGAAAAGAGGAGAACAGCTGAGCATGAGCTGGATGAAGAAGCTATGAGCTGTGTGCTTGCCAGAATCCGAACCTCTTCTTTTGTTTCAGGCTGCGTGCTTTGTccctttccctcctcctctctcctcttccactCCTGTCGCCATTTCAGCGACTTTTACCTCCCTCAAAGGCGTTTTCACCAGTGGTTCTTGTTATTTGGTGTAAATATCCCAAAtgtgtctctttttatatactgtatttctgcCATCACTGAAAGGTTCTGTTGAGGTTGTGTGAAGCATGCAACATTGGGAAATCACAATACAGATTACAACGCACTGCTAGAAAGAGAGATGATAAGCCTAACCCTTTCATCCTGCTCGGTCTGTCTCGGTCCTTCTCATAAGGGTTTTTGTTTCAAACTGtataatgttgaaaaataataataattaagtaTTATCACACCGTATTAACTGCATCTTAAAAGGAGATGATGGTTTGTAAAAGATTAGATTATAATTGATCTACAACATTTTGGAGTTTTAAAGAGTTAGTTTCTTTAATTTTTCAAAGTCATCATGTAAATTTTTTACatagaaaaaaacataacacaagGATGGATGGACAAGCATGTTTGCATTTCTATGTTTTATTTATCCAGATGAGAATATTATTTGCAAAATCATTAAAGGTTTTCAATTCTTT

Function

symbol description
chmp4b Enables protein homodimerization activity. Involved in several processes, including midbody abscission; mitotic nuclear division; and regulation of organelle assembly. Located in several cellular components, including cytoplasmic side of plasma membrane; midbody; and nuclear envelope. Part of ESCRT III complex and membrane coat. Implicated in cataract 31 multiple types.

NR:

description
PREDICTED: charged multivesicular body protein 4b

GO: NA

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801795.1 True 2109 mRNA 0.43 5 26539900 26546310

Neighbor

gene id symbol gene type direction distance location
bpifcl NA coding upstream 104436 26428478 ~ 26435464 (+)
LOC120559752 slc32a1,LOC103362770,LOC104926430,LOC101482923,LOC102798107,LOC102295106 coding upstream 112148 26424113 ~ 26427752 (+)
LOC120559112 shmt2,LOC103362774,LOC102296343,LOC102798994 coding upstream 146167 26383591 ~ 26393733 (+)
LOC120559111 LOC104966951,LOC104926426,LOC101067761,LOC103384493 coding upstream 165571 26366090 ~ 26374329 (+)
LOC120559018 NA coding upstream 265112 26266807 ~ 26274788 (+)
eif2s2 eif2s2 coding downstream 846 26547156 ~ 26553116 (+)
LOC120559568 srsf6,LOC103156038,LOC103362762,LOC103468026,LOC106952897 coding downstream 7549 26553859 ~ 26558935 (+)
l3mbtl1 LOC100690549,LOC102290764,LOC101478974 coding downstream 12951 26559261 ~ 26577079 (+)
sgk2a sgk2 coding downstream 34368 26580678 ~ 26594851 (+)
mybl2a NA coding downstream 52185 26598495 ~ 26607748 (+)
LOC120559830 NA non-coding upstream 116841 26414885 ~ 26423059 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding upstream 137472 26397199 ~ 26402428 (+)
G53239 NA non-coding upstream 175063 26364442 ~ 26364837 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding upstream 209272 26330084 ~ 26330628 (+)
G53222 NA non-coding upstream 210284 26325919 ~ 26329616 (+)
G53285 NA non-coding downstream 80986 26627296 ~ 26631607 (+)
G53418 NA non-coding downstream 274351 26820661 ~ 26823621 (+)
G53445 NA non-coding downstream 443519 26989829 ~ 26993682 (+)
G53455 LOC108233118,LOC101063193,LOC101159349,LOC103384990,LOC104941321,LOC103359395 non-coding downstream 591821 27138131 ~ 27207789 (+)
G53461 NA non-coding downstream 611160 27157470 ~ 27159414 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other upstream 2549 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other upstream 16012 26490442 ~ 26523888 (+)
atp5f1e NA other upstream 95010 26443050 ~ 26444890 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other upstream 156853 26378192 ~ 26383047 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other upstream 186437 26352460 ~ 26353463 (+)
G53305 NA other downstream 253786 26800096 ~ 26800746 (+)
si:dkey-20d21.12 LOC101471973,LOC106098224,LOC107390607 other downstream 638184 27184494 ~ 27187943 (+)
G53488 NA other downstream 709064 27255374 ~ 27255716 (+)
LOC120559859 LOC101468803,LOC100690459 other downstream 865942 27412252 ~ 27417459 (+)
LOC120559343 NA other downstream 1039215 27585525 ~ 27595409 (+)

Expression


Co-expression Network