dffa (dffa)


Basic Information

Item Value
gene id dffa
gene name dffa
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24325261 ~ 24334067 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801878.1
AAGCAATAGTTTTCGTTCGGTAACTACGTTCTAGCATGTATCCACCAGGCGGCGGTTCCGTGTTGAAAACTGGTTGAAAACTGCCAAGACAAGACAGGCGAGAACTACTGTCGGTATTTGAAACTGttcagtaaaacaaaatacgTTTCTCCACATAAAGCCTAGAATGACAGATAGGAAACCGTGTAAGGTGTGCAATTTCACACGACAGAAATCATACGGTTTGGTAGTTCCCTCTTTGGATGATCTGAAGATAAAAGGATGTGAGTTTCTTGGGTTCAGCCCTGGTGAGCCGGTCACAGTGGTCTTAGAGGATGATGGGACGATAGTACAGGATCAAGCCTACTTTTTGTGTTTACCTTCAAACACAAAGTTCATGCTGTTGCATGAAAAAGAGACATGGTCTCCAGGTTGCAAGATGGATGGTGGCACGGCCTGGATGGCCAGAGATTCTATGGTGCTGGAGGCCGATACTGTGGACAGCTCCAGTGCTGCAGCACACTGGTGGCACCTGGCTCAGCAGCTAAAGCAGGACCTTGCCAGCATCATCCTCATGTCTGAGGCAGACTTACAGGCCTTAGTGGATGCCCCATGCCCTGAGCTAGCCTCTGCTATGGGCTTCGAAGAGAAGAAGGCAGAGGATCTGCAGGAGACACTGCAGGGAGTTTTGGACCGACGAGAGGAGGAGAGGCAGTCCAAGGAACTGCTCCAGCTCTACCTCAAAGCTGCGGTGAAAGAGGACCAACAGCAGGAAGTGCCAAGCCAGCCCAGCCAGGAAGGGGCTGGAGACGTGGAGGTGGATGCGGTGGAGGTGGACTCTGCATCCGGATTCATGTCCAGGACACTGATGGTCCTGAAAGGCAAAACAAGCCCAGAGACCAGACTCTCCACTGAGGAACTGCAGATGGTAGTGACCAGAGGGACGGAAGCTATGGAGAAGGTGTTGGGCTGGGACAGAAGGAGGACGTCTGCGCTGCTGCACGCCTGTGAAGCCGAGCTGACCGGGCGTCTCCAGCAGGTTCAGGCCGTGCAGTCCATCAGGAGCAACACACAGTTGGACAGGGTGCAGCgcgtggaggaggagggtgtaGAAACGCCAGCCCAAGGCAGCAACTAGATCAAGACTTCACCTGAGCAGAGACTGCTAAGAATTTACACTACCTGCCTCGGGGTTTGAATAGGATTTACCCTATGTTACTGGTAATATCCATAATGCTGCAATCCATGAATGTTTATGATGTTGATGTTTGCTTCATTTAGTAAAACTTGCAAACCACTTGAACGCTTTTGCCTCAAGAGGAAAAAGTCATGTTTATCAAAGACATGCTGGTGTTAACCACGGGCATCAGCTTACTATTGGCTCCTTTTTTTTGATGAGTGCCATGCTGTGAAAATAATTACAGATAAACATATCCATATGAAACTTAAAGcaaaacattttgagaaatatgcttattcgctttcttgctgagagttggTTTGAgaggattgataccactctcatgtgcCAGCACccagctagcttagcttagcttagcttagcataaagactggaaacggggatacggctagcctggctccgtaCTAAGCTCATGAATTACGCCTACCTGTGGACCTATAGggaacaaaaacatgtttgtaaatataaaaaaatcctTTTCATTTTGTACCACAGTGTATGTGCACCTTGGTGTGAAATGTCATCATTAACTGAGCATTTAGAAAAGCTCTGCCTAGAACAATGAATGGTAGGAATACCTAAATATGATGAGTGCAGGAACTCTCTACCCAAGGCACAAAACCAAAGTAACGTGTACAGCACTGGGTTAGAGTGACATGGAGTGCAGACAAAAACTGCAGGCAGGTTTATACTGAAAGAGAAAATTGTTTCTGAGATATATGCAAATCaatcaaatatatttataaaagcTGAATTTGAATGTGGTAATTAGACAAATTATTAATTCTAACAATAAGGAGTACAACAAGATAAGATGTGTATCACTCCATACAGGGAAGCTTCACTGAACACATGGTGGGTGGGAATGACAAAGCTTCATCTTTGAGTTGCATAGAACCAATATTTCTGGATGAGAGCTCCTTTAAGACCATCTATTATATACTATTTTTGAAGTTCTGTATCAGTCTAGTGGCTGCGTAATGTAAGATGGTGTGTACAGTGGGTCCAGGTCTGTGTGACTCATAGGCCATGTAGAAGATAGCCTTTGTCTTGCATGTCATGCATGTCATCTCATCATCAGACTCTTGAACAAGAAACCCATATGATGGTGGATGAATTTGCAGAGGGGTcatctttttgtgttttggtgAGATTGAGATGTCACCACCGGCTTGTACTTTAGTATTAAATACAGGGAAAAGTAGAGCATTTATCAAGGTCTCCTATTTAGTCAGTATTGTGTCTACGTCACACGGTTTCACCAAAATTAAGCTGTCACTCTGCTGTTTTATAACCCTGTTAGAATTGTCATGTGTCAGTTCCCTCACACTTTGTATTTAATTTAAACATGCAGGACAAACATACATAGGAAGTTGTATATGAGTGTACGTTATGTAATTTAGGTTGgcttttgtaaatgtgttgaaAGGTGTTTTTCTAAAATAAACCAGCCCTCAAACTTTT

Function

symbol description
dffa Predicted to enable deoxyribonuclease inhibitor activity. Predicted to be involved in regulation of apoptotic process. Predicted to act upstream of or within apoptotic DNA fragmentation. Orthologous to human DFFA (DNA fragmentation factor subunit alpha).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K02310 DFFA, DFF45; DNA fragmentation factor, 45 kD, alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801878.1 True 2644 mRNA 0.44 6 24325261 24334067

Neighbor

gene id symbol gene type direction distance location
casz1 casz1 coding upstream 71474 24204375 ~ 24253787 (+)
c5h1orf127 LOC104954118 coding upstream 304337 24013889 ~ 24020924 (+)
pgd pgd coding upstream 323825 23994946 ~ 24001436 (+)
kif1b kif1b coding upstream 331569 23928466 ~ 23993692 (+)
ube4b ube4b coding upstream 397795 23906900 ~ 23927466 (+)
LOC120559012 NA coding downstream 108821 24442888 ~ 24497151 (+)
cntn3a.1 NA coding downstream 225340 24559407 ~ 24630995 (+)
ttll9 ttll9 coding downstream 376716 24710783 ~ 24715633 (+)
ppp1r3da ppp1r3d,LOC104919428,LOC100701819 coding downstream 385708 24719775 ~ 24721848 (+)
sycp2 NA coding downstream 388222 24722289 ~ 24750342 (+)
G52728 NA non-coding upstream 51225 24270121 ~ 24274036 (+)
LOC120558580 NA non-coding upstream 251253 24061063 ~ 24074008 (+)
G52629 NA non-coding upstream 311960 24012963 ~ 24013301 (+)
G52628 tardbp,LOC106566965 non-coding upstream 314160 24009796 ~ 24011101 (+)
G52611 NA non-coding upstream 487299 23837692 ~ 23837962 (+)
G52742 NA non-coding downstream 26739 24360806 ~ 24362267 (+)
G52756 NA non-coding downstream 53086 24387153 ~ 24390127 (+)
G52817 NA non-coding downstream 371471 24705538 ~ 24705906 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding downstream 417828 24751895 ~ 24753180 (+)
G52892 NA non-coding downstream 625749 24959816 ~ 24960103 (+)
ctnnbip1 ctnnbip1 other upstream 510855 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 560096 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 1256782 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 1478323 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 1762740 22562154 ~ 22562521 (+)
LOC120559118 LOC102791662 other downstream 606728 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 619375 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 1409522 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 1737518 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 2018393 26352460 ~ 26353463 (+)

Expression


Co-expression Network