LOC120559902 (twist3b,LOC104929895,LOC103352822)


Basic Information

Item Value
gene id LOC120559902
gene name twist3b,LOC104929895,LOC103352822
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 31465768 ~ 31469785 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801984.1
TCACATGCAGCTACAGGAGCGGGACATGAGAACAGTCCGGTTTGCCGATGTGTACACTCACAGAGACTGGGAAGAGATCATTGGCAGGTTTCCACATGTGTGGATGAAGAAGCACTGTGGCAATCTAAAGCTGAGGGCTGATTACACACTAATTTTGGCTTGGCATGTTCCGATGTGACAAAGTGTAAAGCTGGTAACTGTTGGAGAAGAACAACACAGCAGAAGGCCGGAGAAACACACAACGTAACCAGAGGGAGCTCCTGAAGACGGACAGAACAGAGGAAAACTGTGTGAAAGCAGGAGAGTGAAGAGAGATATAttaaaggaaagagagaggcacTAGAGatattcagagagagagaagacagaagaAAAACGTGGCCAAGCATGAGAGAGGAGGAGCAGTCCAATGACGACCACCCTGAGGACGAGGGGGTTTCCAGCGAGGAGAACACGGGAAGGCCACCTTCTAACGCCTGTCCTGTTGTTGTAGCAACACCGGGGGTCACCAGGCGCAAACGGCAGACGGGCTCACAAACGGAGGATCACGTTACAACAGTTACTCCCACTACAGCAGCACACGACGGCAAGGTGAAGCCAGCGGAGGACATCCAGATTTACACGCTGACTGAAGCCAAAAGACTCAAGAAGAGTCCTCAACATCGGCCGCCTTCCTCAGGCCCATCCCTTTCTCCTGGCCCCGGCGCTAGTCCTGGAGATCTCTCGGCCCTTGAGGATCCACACGGCCAGCGGGTGATCGCCAACATTCGGGAGCGCCAGCGGACACAATCTCTGAACGACGCCTTCGCCTCGTTGCGTAAGATAATCCCAACGCTCCCCTCTGACAAACTGAGCAAGATCCAGACCCTTAAATTGGCATCGCGCTACATTGACTTTCTGTACCAGGTTCTGCAGAATGACGAGATGGACACTAAGCTGGCTGGATGTAACTACCTGGCCCACGAGAGACTGAGCTACGCCTTCTCTGTGTGGAGGATGGAGGGGGCCTGGTCGACCATGTCTGCTGGTCACTAGCCCTGCCTGAAAGCTAGGTTTGTCTTTTGACTGTTGCCCTAATGACAGGGAAATGTTCTCATTTGACACAGAGGGCTGAGGTCTGAATTGGGTCTACCAGTGGACTTTTTAACCCCTCAGATCATCGGTTTGCCTCGATGATAATAAAAAAGACTGACACTTGAGCATGAGCATTTGGACCAAGCTGATTTTTAAGCCACTATCCCTTTGTCAAGTTTTCATTGATGTCAAGCTACGTATCAGATGCATTCTTCTAATTCTATTGTTTTGCTTGCCAAAAGTAGCTTTTACTGCTCAAGTGTGCCAATGCTGGCATTCCAAGAAAAGTATCACAAAAGGGACATTGTGCTCAGTGTACGATTCCTGGCTTTTTAAAGGAATTTCTTCATGTTGTTTGTACTAGTAAGATCACAATGGAGGACAGGTGACAGATAAAGACACCCAGACATCATTTCAATCATTCAACAACCTGATGGTTGATGGTCGACCTGTCCTAAATGTTGCCTCCACATGACAGCCCGGCTTATTCTGCTAGAGACGTCTGAGCCCTCGGCTTTCTCGGGTCCTGAAGCTTGACCTCTGGTTTCATCCTTATCATCACCCTTGGTTTTATCACCACAACTGCCATCTCTATCATCATAACCTTTACTATCGTCATCATAGGTATGCAAACTTGAGACACATTTGAACTTCGTTTCTGTGCTGCTGAAGTGTATaaagttttgtgtaatgtacaaAGTGCAACAGCTAGAGATTGCGGAAGAGGGATTCGAGGAAAGTCAGAACTGGAAAAACTAAATTTGATTGTTTCAAGAGAGATTGGTCCTTTGACTTTTCTGTACCCTTTCAACTCTTACTTTTCCAAGACTCTGACGTATCATGAATCTCTGACCAACTCTGAACCTAAGCGACGGTGGAAAACGTAGCCGTCCATCCTGACTTCACTTTCTCCTCTTTATACCCAAACCGAGCCCCTTTGTTTCTTCtagtgccaaaaaaaaaaaaaaacttctcctCTTGAAATTCTTTCCTCTCATTCTGGCCCAAATTTGCCTGCGTTGCACGAAACCGTGATCCAGCTACAGCAAGCTGACGAGGAGGCGTAATGAAAACAAACGGTCTCAAAACGCCATGAATCATGTGTGTCACCATCAAAGGGGAGGCTGATGTGGCTCCCTGCTGGGCTCCCATAAACCACTGGAAGTGATGGAGGAGCTGCTGAATAAAGTGACTGTGATCTTCCCTGTACATCTCTGCTCCATGCCAACATTACTGCTACACTAATCATGTGGACTTTGATGCGAATGGAACTGAGAAAATGTATGTTTAAGAATATtaaaagacatattgatcaGGATGCAGATGGACATGGGGAAAGAAGACATTTCTGCACCAAGTAAACCAACAAAGAGCTCTGATTtattgaaaatacagaaaaatagaGAAATTGACAATACAAGTCAAGTTGGACCAGTATtttgtgtttagtttagtttttcttACTATTTTCCCAGAGGTATTATTCTAAGAAAACTTAGGCAGAGCAAGGCTTTGTTTTTGAGGAGTGTTTACttgaagtatatatatatatatatatatatatatatatatatatagtgtggtACTTTACAAATAAGGAGTGACACTGATACAGTATGTCTgattatactgtacatatcacAAGCAGAAAATTCCCTGGAGAATTAGATGTAGTGATGCATACAGCACATTAATCATTATTtgtctgaaaaataaaacttcaaaCTATT
>XM_039801985.1
TCACATGCAGCTACAGGAGCGGGACATGAGAACAGTCCGGTTTGCCGATGTGTACACTCACAGAGACTGGGAAGAGATCATTGGCAGGTTTCCACATGTGTGGATGAAGAAGCACTGTGGCAATCTAAAGCTGAGGGCTGATTACACACTAATTTTGGCTTGGCATGTTCCGATGTGACAAAGTGTAAAGCTGGTAACTGTTGGAGAAGAACAACACAGCAGAAGGCCGGAGAAACACACAACGTAACCAGAGGGAGCTCCTGAAGACGGACAGAACAGAGGAAAACTGTGTGAAAGCAGGAGAGTGAAGAGAGATATAttaaaggaaagagagaggcacTAGAGatattcagagagagagaagacagaagaAAAACGTGGCCAAGCATGAGAGAGGAGGAGCAGTCCAATGACGACCACCCTGAGGACGAGGGGGTTTCCAGCGAGGAGAACACGGGAAGGCCACCTTCTAACGCCTGTCCTGTTGTTGTAGCAACACCGGGGGTCACCAGGCGCAAACGGCAGACGGGCTCACAAACGGAGGATCACGTTACAACAGTTACTCCCACTACAGCAGCACACGACGGCAAGGTGAAGCCAGCGGAGGACATCCAGATTTACACGCTGACTGAAGCCAAAAGACTCAAGAAGAGTCCTCAACATCGGCCGCCTTCCTCAGGCCCATCCCTTTCTCCTGGCCCCGGCGCTAGTCCTGGAGATCTCTCGGCCCTTGAGGATCCACACGGCCAGCGGGTGATCGCCAACATTCGGGAGCGCCAGCGGACACAATCTCTGAACGACGCCTTCGCCTCGTTGCGTAAGATAATCCCAACGCTCCCCTCTGACAAACTGAGCAAGATCCAGACCCTTAAATTGGCATCGCGCTACATTGACTTTCTGTACCAGGTTCTGCAGAATGACGAGATGGACACTAAGCTGGCTGGATGTAACTACCTGGCCCACGAGAGACTGAGCTACGCCTTCTCTGTGTGGAGGATGGAGGGGGCCTGGTCGACCATGTCTGCTGGTCACTAGCCCTGCCTGAAAGCTAGGTTTGTCTTTTGACTGTTGCCCTAATGACAGGGAAATGTTCTCATTTGACACAGAGGGCTGAGGTCTGAATTGGGTCTACCAGTGGACTTTTTAACCCCTCAGATCATCGGTTTGCCTCGATGATAATAAAAAAGACTGACACTTGAGCATGAGCATTTGGACCAAGCTGATTTTTAAGCCACTATCCCTTTGTCAAGTTTTCATTGATGTCAAGCTACGTATCAGATGCATTCTTCTAATTCTATTGTTTTGCTTGCCAAAAGTAGCTTTTACTGCTCAAGTGTGCCAATGCTGGCATTCCAAGAAAAGTATCACAAAAGGGACATTGTGCTCAGTGTACGATTCCTGGCTTTTTAAAGGAATTTCTTCATGTTGTTTGTACTAGTAAGATCACAATGGAGGACAGGTGACAGATAAAGACACCCAGACATCATTTCAATCATTCAACAACCTGATGGTTGATGGTCGACCTGTCCTAAATGTTGCCTCCACATGACAGCCCGGCTTATTCTGCTAGAGACGTCTGAGCCCTCGGCTTTCTCGGGTCCTGAAGCTTGACCTCTGGTTTCATCCTTATCATCACCCTTGGTTTTATCACCACAACTGCCATCTCTATCATCATAACCTTTACTATCGTCATCATAGCTGCTGAATAAAGTGACTGTGATCTTCCCTGTACATCTCTGCTCCATGCCAACATTACTGCTACACTAATCATGTGGACTTTGATGCGAATGGAACTGAGAAAATGTATGTTTAAGAATATtaaaagacatattgatcaGGATGCAGATGGACATGGGGAAAGAAGACATTTCTGCACCAAGTAAACCAACAAAGAGCTCTGATTtattgaaaatacagaaaaatagaGAAATTGACAATACAAGTCAAGTTGGACCAGTATtttgtgtttagtttagtttttcttACTATTTTCCCAGAGGTATTATTCTAAGAAAACTTAGGCAGAGCAAGGCTTTGTTTTTGAGGAGTGTTTACttgaagtatatatatatatatatatatatatatatatatatatagtgtggtACTTTACAAATAAGGAGTGACACTGATACAGTATGTCTgattatactgtacatatcacAAGCAGAAAATTCCCTGGAGAATTAGATGTAGTGATGCATACAGCACATTAATCATTATTtgtctgaaaaataaaacttcaaaCTATT

Function

NR:

description
twist 3b

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801984.1 True 2804 mRNA 0.45 2 31465768 31469785
XM_039801985.1 False 2252 mRNA 0.45 2 31465768 31469785

Neighbor

gene id symbol gene type direction distance location
trnaq-uug_1 NA coding downstream 238637 31227060 ~ 31227131 (-)
itchb itch,LOC100697163,LOC101474118,LOC102781723 coding downstream 274412 31162519 ~ 31191356 (-)
e2f1 e2f1,LOC102780950 coding downstream 323894 31128228 ~ 31141874 (-)
LOC120558334 NA coding downstream 340677 31113760 ~ 31125091 (-)
ctnnbl1 ctnnbl1 coding downstream 408192 30988074 ~ 31057576 (-)
LOC120559355 klf15,LOC103367789,LOC101076255 coding upstream 912099 32381884 ~ 32392543 (-)
cpne9 cpne9,LOC100694516,LOC101469997,LOC102776939 coding upstream 943279 32413064 ~ 32511065 (-)
si:ch211-220i18.4 LOC103373814,LOC108233036,LOC102211047,LOC100693975,LOC102782987,LOC102291816 coding upstream 1100523 32570308 ~ 32586963 (-)
LOC120558593 LOC106915442,LOC106565226,LOC103152765,LOC106947658 coding upstream 1219102 32688887 ~ 32694442 (-)
krt8 LOC104959359,LOC106525573,LOC108233108,LOC107391340,LOC107088570,LOC100702817,LOC103152763 coding upstream 1251048 32720833 ~ 32726627 (-)
G54567 NA non-coding downstream 115191 31347281 ~ 31350577 (-)
G54549 NA non-coding downstream 230294 31235247 ~ 31235474 (-)
G54509 NA non-coding downstream 367583 31097980 ~ 31098185 (-)
G54508 NA non-coding downstream 400796 31064741 ~ 31064972 (-)
G54470 NA non-coding downstream 576550 30889018 ~ 30889218 (-)
G54599 NA non-coding upstream 21771 31491556 ~ 31527860 (-)
G54600 NA non-coding upstream 28992 31498777 ~ 31500889 (-)
G54609 NA non-coding upstream 153336 31623121 ~ 31623330 (-)
G54618 NA non-coding upstream 471902 31941687 ~ 31944265 (-)
G54629 NA non-coding upstream 522564 31992349 ~ 31992551 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 1393069 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 1699895 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 1972793 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 2109884 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 2436447 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 823157 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 1121198 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 1297572 32767357 ~ 32773486 (-)
G54834 NA other upstream 1410408 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 1496850 32966635 ~ 32971163 (-)

Expression


Co-expression Network