LOC120558677


Basic Information

Item Value
gene id LOC120558677
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25009989 ~ 25015398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639163.1
CTCCGATTGCTCATTTTGTCGGACAGCTGGGgggagagaaacacagacaatCAGAGGACATCGAAAACTTTGCTGTGGAAAAAGGAACCAATGTGCTTGGATCAGAGTGCTAAAGACAAGGCTCTCTGACTGTCCACCTACAGCACTGCTACAATGTAGATCACAATCTCAACAAAACATGAAATGCATGAAACTGAGCACAAACCAGCGTGTTGGGGCTGCTGCCTTGATGACTGCTTTGTTCTGTTTGGAGGAAAGCAGATATTATCAGTAGGCTTCCTGCTTGAACATGTTCAGTTGAGAAAGCACATTTAATAAAACTCAGTTAAATTTCtgtaaaaaagattttttttgtttaatgaaATACTTTCTTTGGCAACAAAAGTCTAAACTTGCATtatatacacaaaatataatTGTGTAAGCAATCATACATGAGAGTTGATCTTATTTTGTGTTGTGACACAGAACCTGCTCCGTATCTTCATACAAACTACACAAAACATTATATATTTGTTCACTGTGTGTGAATCTCTCCAGTGGATAATTACCAAAGCTCTAAGCACCAGTATGTAGCTACTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639163.1 True 584 lncRNA 0.38 3 25009989 25015398

Neighbor

gene id symbol gene type direction distance location
alas2 alas2,LOC108236847,LOC106524166 coding upstream 10434 24990894 ~ 24999555 (+)
LOC120559115 LOC104919424,LOC101480694 coding upstream 90223 24838584 ~ 24919766 (+)
pigt pigt,LOC102793327 coding upstream 216887 24785963 ~ 24793102 (+)
sycp2 NA coding upstream 259647 24722289 ~ 24750342 (+)
ppp1r3da ppp1r3d,LOC104919428,LOC100701819 coding upstream 288141 24719775 ~ 24721848 (+)
znf362b LOC104920215,LOC103353008 coding downstream 7227 25022625 ~ 25034515 (+)
LOC120558682 LOC103353010 coding downstream 39739 25055137 ~ 25058398 (+)
zmynd12 zmynd12 coding downstream 43062 25058460 ~ 25065176 (+)
LOC120558685 foxj3,LOC100698572,LOC102787620 coding downstream 73507 25088905 ~ 25154501 (+)
si:ch211-156j16.1 NA coding downstream 139954 25155352 ~ 25165194 (+)
G52892 NA non-coding upstream 49886 24959816 ~ 24960103 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 256809 24751895 ~ 24753180 (+)
G52817 NA non-coding upstream 304083 24705538 ~ 24705906 (+)
G52756 NA non-coding upstream 619862 24387153 ~ 24390127 (+)
G52742 NA non-coding upstream 647722 24360806 ~ 24362267 (+)
G53056 NA non-coding downstream 794315 25809713 ~ 25811047 (+)
LOC120559215 NA non-coding downstream 979835 25995233 ~ 25997094 (+)
G53109 NA non-coding downstream 1080961 26096359 ~ 26099635 (+)
G53221 NA non-coding downstream 1309823 26325221 ~ 26325468 (+)
G53222 NA non-coding downstream 1310521 26325919 ~ 26329616 (+)
G52871 LOC104956590 other upstream 52659 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 64669 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 1195583 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 1244824 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 1941510 22991252 ~ 23068479 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 728191 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 1056187 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 1337062 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 1362794 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 1427652 26443050 ~ 26444890 (+)

Expression


Co-expression Network