LOC120559180


Basic Information

Item Value
gene id LOC120559180
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35432383 ~ 35448470 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639226.1
agtacagccatggaagcagcaaacaaaccaacggcatcaacggagatagattctacccgacctaaaaaaaacctTGGCATGATTCTAACAGTTGCATGACCAGAGACGTTACAAAACCAGGGTGAATATTGGAGAtcagaaagatggagacagcctCGCCgcagccgacaacgGAACacaacttaaaggtgcagtctGTGAGGTGACCAATTGGAGTCAGAAAGACTCTGGCCACTGGGGCCAGAACAGGTCCAACACCTTCATGGTGATCCCGACGTGATGGTCAGAACCAGAACCCGAACCTGAAGCCGAACCAGAACTTTTTGGCGGACTTCAGAAAACTCAGACTCTACTCTCCAGAACCAACGGTGCACCGAGAAAaaggTCCAGGAGAGAGCTGAGGCACCTGCCCCAAAGAAACCCAGAGATCCCATCAAAGTAGGAGAGTGGGTGTGGCTACGAGTCCTAAAACGGAAGTGGATCGAGCCCAGGTGGACCGGACCACACCAGGTTATCAGCAACCACCTCACACTCGGTCAGGTTGGTCAAGAAAGGTACCAACTGGTATCACCAGACATTATGCCCCCGAGCCTCTGATCCACAAGGTGCAAGACCTTTGGACGAGGTAAGAGCTGATCTGCAATATGTGGCAGCCTCAGAACCCAGTGATGAGGGAATTTCACATCCCAAGGACTAAATTGGTAGTGACTGTAATAACCATAATAGTGCTAGGCTCATTGGGTTACATGTGGTGGGAGACACAGGAGGCAAAAACTGGCTCCCCTATCACTATAATCTGTGCAGAAATAGGCAAGACTACTTCAGTCTCGGTAGATATGTGCAGCATATTAGCCTGTGTAAGCCATAACCAGTATACTTGTCTCCAGTACCGCAAGAGGACAGCATATGTATGCACTGACCCCTGTAGTTCCTGGAGCCATGTATTTGCAAACTTTGGTGAGGATTGGGGTTATAACCCACCCAAAGCTACCCAGGGTGGTCTGAAGGGCCGACTCTCAATCACCCGCCagcaacatcatggccaccaatgTGCGCCAATAATAATCACTCTAAGAAACGCTCAAGCCTCAGATGATGGGGAATACTGGCTCGGTGTGGAGGTTATCAATGCTGATCCACTGGGAAAATTCAGGATACAGACTTTTGTTAGACCAACACCTGCACCTACCGTCCCGGCTAATATAACAATGACACCTGCCAGTGAGTATCATTGCATCCCAAAACATGGATGAGGTTGTTAAAGAATTCAGTACCCATCATCACAACTACTGGAGGAAGCGTGCTACTGCAAACAAACCCAAGTTCGACTCCATCAACAACCCATTTGGTTCGTAAAGAGCTAGCTGAAAACTCTGGTGTAGAGCCAAACCCTATAACTGACTGGGTCCATGGTATGTTTGGCAAGTGGAAAGTTATGATCATGTCCACGTTGGTCTCCATAGCTGTGTTCACGGGCATTCTGGTGTGCTGTGGTTTTTGTGCTATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639226.1 True 1508 lncRNA 0.49 3 35432383 35448470

Neighbor

gene id symbol gene type direction distance location
flna LOC100702302 coding downstream 48154 35311194 ~ 35384229 (-)
emd NA coding downstream 128368 35298496 ~ 35304015 (-)
mrpl49 NA coding downstream 145173 35286360 ~ 35287210 (-)
las1l las1l,LOC103461358 coding downstream 162954 35266701 ~ 35269429 (-)
crebzf crebzf coding downstream 166310 35262964 ~ 35266073 (-)
LOC120559648 LOC103362257,LOC106633114,LOC101486280 coding upstream 804706 36253176 ~ 36270025 (-)
plch2a plch2,LOC106935153 coding upstream 824401 36272871 ~ 36447792 (-)
igf3 LOC108228312 coding upstream 1133053 36581523 ~ 36588712 (-)
si:dkeyp-110g5.4 NA coding upstream 1151103 36599573 ~ 36606768 (-)
lrif1 NA coding upstream 1161667 36610137 ~ 36625969 (-)
G55496 NA non-coding downstream 14584 35415007 ~ 35417799 (-)
G55409 NA non-coding downstream 185836 35245657 ~ 35246547 (-)
G55400 atp2b3,LOC103376147 non-coding downstream 215764 35214088 ~ 35216619 (-)
G55396 NA non-coding downstream 255326 35176798 ~ 35177057 (-)
G55376 NA non-coding downstream 281760 35110380 ~ 35150623 (-)
G55511 NA non-coding upstream 37262 35485732 ~ 35634395 (-)
G55505 NA non-coding upstream 42633 35491103 ~ 35709461 (-)
G55514 NA non-coding upstream 46080 35494550 ~ 35503023 (-)
G55507 NA non-coding upstream 81544 35530014 ~ 35549671 (-)
LOC120559181 NA non-coding upstream 105257 35553727 ~ 35555568 (-)
G55492 NA other downstream 22617 35404604 ~ 35409766 (-)
LOC120559165 NA other downstream 154529 35269896 ~ 35277854 (-)
ntsr1 ntsr1,LOC103361890,LOC104959625 other downstream 1141314 34236566 ~ 34291069 (-)
G55124 fam110a,LOC104960682 other downstream 1304888 34024018 ~ 34127495 (-)
si:ch73-70k4.1 NA other upstream 426152 35874622 ~ 35898736 (-)
LOC120559361 NA other upstream 1109060 36557530 ~ 36559959 (-)
G56160 NA other upstream 1233429 36681899 ~ 36724209 (-)
LOC120559655 mtch1,LOC102799640 other upstream 1274768 36723238 ~ 36744132 (-)
rhoaa LOC106529366,LOC107558917,LOC102777028,LOC107687289,LOC103367639,LOC107599000,LOC103384870,LOC106572042 other upstream 1436333 36884803 ~ 36895540 (-)

Expression


Co-expression Network