LOC120559430


Basic Information

Item Value
gene id LOC120559430
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 1499504 ~ 1521327 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639271.1
TGGAAAGTGTGCTTCTTTGCCACGTTGCCATGGTGGCAGATATAGGGGGCACAAATGTAGATGATGCAACGAGGCGAATGATGTCAAACGAGCTGGCATTGGACTATAACATGTTTGGCCGTCACGGGAAAAAGAAGTTTAAGGACTTGTGTCTTTTCAACGTTGTGTATGaggctCTTAAGAAGAATTCGTTGGTGAACCAGCAGGAGGCAGAGAGGGCACTGTCGAAATGGCTCATTGGGgcaagagacagaggaggacgaAGGGCATCCAGACAGCCAGTGCCAAATTAAAAAGTactgagcagtggtggaatatgAGTGAGTTGTATTCAGGTCGCAGAGCCGCGAGGAACTTTAACATGAAGTCTGAGAGGAAGCTGTCAGCGAAGAGGGAACAGGTCACAGAGCTGCGAGGAACTTTAATATGAAGTCTGAGAGCTGTCAGCAGACCAGGGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639271.1 True 460 lncRNA 0.49 5 1499504 1521327

Neighbor

gene id symbol gene type direction distance location
adrm1 NA coding upstream 446494 1048972 ~ 1053010 (+)
LOC120558589 LOC103356004 coding upstream 454265 1015388 ~ 1045239 (+)
trim101 NA coding upstream 488667 984169 ~ 1010837 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding upstream 513233 938976 ~ 986271 (+)
ptk6b NA coding upstream 651882 825255 ~ 847622 (+)
LOC120558473 LOC103372586 coding downstream 46968 1568295 ~ 1608445 (+)
LOC120559387 NA coding downstream 892244 2413571 ~ 2420858 (+)
LOC120558519 NA coding downstream 1027612 2548939 ~ 2550724 (+)
LOC120558523 NA coding downstream 1124565 2645892 ~ 2647467 (+)
LOC120559413 NA coding downstream 1140245 2661572 ~ 2662342 (+)
G46274 NA non-coding upstream 27122 1472156 ~ 1472382 (+)
G46273 NA non-coding upstream 27359 1471913 ~ 1472145 (+)
G46259 NA non-coding upstream 130713 1367637 ~ 1368791 (+)
G46258 NA non-coding upstream 132201 1365120 ~ 1367303 (+)
LOC120558411 NA non-coding upstream 147374 1351730 ~ 1352130 (+)
LOC120559421 samd3,LOC101476819 non-coding downstream 28843 1550170 ~ 1551968 (+)
G46325 NA non-coding downstream 108205 1629532 ~ 1630337 (+)
G46329 NA non-coding downstream 117068 1638395 ~ 1658925 (+)
G46339 NA non-coding downstream 157010 1678337 ~ 1678602 (+)
G46340 NA non-coding downstream 166760 1688087 ~ 1688318 (+)
G46238 NA other upstream 215125 1277288 ~ 1284379 (+)
LOC120559832 rps21 other upstream 251733 1236315 ~ 1247771 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other upstream 599208 793902 ~ 900296 (+)
G46305 NA other downstream 1358 1522685 ~ 1523231 (+)
G46328 NA other downstream 114621 1635948 ~ 1638170 (+)
LOC120559409 NA other downstream 684014 2205341 ~ 2232659 (+)
LOC120558501 NA other downstream 816009 2337336 ~ 2339429 (+)
G46530 NA other downstream 868619 2389946 ~ 2390512 (+)

Expression


Co-expression Network