LOC120559738


Basic Information

Item Value
gene id LOC120559738
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30496040 ~ 30500331 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639359.1
tgcaggaGGGAGAGCAAGTGGGCGGGGGCCTTTTAATCTGGGATTTGGACGAGCGTGAGCAGGCCTGATACCAGCACCCGTCAATGCTATCAGTCGTCCCCCTACATTCCCTCCTTCCCCACCTCAGACGAATGTGACAAGCGCTGGCAGACTGGTCCAAAAACCCTCTGCTCTCCTCCCTCAGCCTCACCTTCTCTCCCCTTTGTACCCTAAGAGATCATGACTCCAGGAGCAGAAGTGACTAAGGGCTTTCCAAGAATAGGATTCCCTTTGACAACCACCAGGCGCCCCATTTCACTGCATCTGGCCTTGGGcagcgagagagaaagacagagacaagacaAAGAGAAGGGGGTTTCAAATAGCCTGGATTTATCTGACAAGACGTCGACAGGAAAGAAGACAACACACTGGATGAACTGGGGGAGAGACAGGCAGCTGGGAGCTGCAGGTTAGGCCTTGGGCTGGTTGAGGGGAAACAGGCCCAGTGTGCATCCAGCCACCACTCTATCCTCTTACATAATGTCTCAAGTTCAATATAGCCCTGGTTGGCTATTTAAAGGATGTCCGTCTAGGCCAGCTGACAAAAAGGTGATATACTTAGTAGCCACCGCGCAGCATGAAAGCCTCGGCTAGGGCTATATTGGTCACAGACAAGCCCGGGGTGTGGATTTTGGTAATGTTGCAGATATTTTTAGCCCGGCTGATGATCCAGGGTATTTACATGAGGTGCAAAACTTGCACACCCCCCATAGCTGGATGCCTAACTTCTCTGTGTAGCACCAGGCAGTCAGCTTAGTAATATTGGCTAAATGACTAACTTAGGCAATCACTTTGCACGTGCATGATGTTTGTTTTCAACACTTGCACATACTAAATCCAGCCAAAGCTGACTAAATTATTGACAAAAATGCTAGTGGTGATACGACAAATGGTCAAAAGCTTTCAGGGTAGTCAGGAAGTTCTTTAATCATGCAAAAACAACTAATAGCACAGGGTATCCATAGTTTGTGGCTTTTTGTATTTACATGGAGTAAACAGTACTTGTCAAACACAGAGTAAAAATGGCTCTGGGCattaatggttaataaataACTACAATGTTTTTTCATCCAGCCTTTTTCCAATAGCCAACATGGAAACCAAATTCTTTGGAAGGCAGAAACCAGTTGATACATACCGGACATCTTGCCTGAAACAAACTGAGCATACAGAGTAATTTCTCCAAAAGTTCTTCGCAATTTTGCATTACTTCAATGCATGTATCATGTAAATAATGGAATAATCCCTTTTCAATTTGGATTAAATAATGTACTGGCAGTAGTCTGGTGTTTAAGATAAACTAATGATCATCATATTTGCATATTTTGAACAATGTCTAATGTGTTATATGATCCTTTTCCACTCAAAAAGCATTCAAAACAAGCGTCTTTAATAAAACAGTTTCTAAGTGACAGCAAATCCCAGATTCAGTTAGGGATTTAGTCCAGTACCCATTCATCATCACAGGAAAATGTTACAGAGCCCAATCTTATTATTGAAAGCAAATGTATGATACTTTGCTAAGATTTTACGCATCTCATTTTACTATGCAAAACTAAAGACATAGTTTGAATGTAGTTCATGTTTAAGACCGTAGGTCTTACTggaaaaataacaaatgcaaAGAATGAATTTGCATTTCCGCATTTGAAATCatcagaaaataaatatattgtgTTTTGGCTGCCAGTTAAGGCTATACACTATTTGAAGATGACTCTTGTATCTTGTAATCCACATTTGCTATTAGTTTCTGTATCTAACAGACTGCAggataactttatttatttataacttttttatttttataattgcaATACTCATAAGAACGTTTTAGACAAAGTACCTCTTTCTGTAACGAACTTGCTTGTTTATATAGGCGTCAACCTGTCGGTAAAGAGAAGTTAAATGGTAAAATTTTAGTTAGTTGGTACATTGTACCTCTTTTCCAGCCTACTCTTTTCACCGGCCAAAGATAGCAATAGATAATTGCACTTCTCAGTGAAGTGAGATGAGCGTGACTTCGATAGTCAAAGTCATTTAACAGAGAAGACCCAGAAACAATGGCAGGTGTGGCACTATTAACCTGATCAAAGCTGAGATTGGATTTACACAGCTCAATAAAAATGTAGTGTTATTATGTTAAACATCTAAACAAACTATTGACATACACCTGGTATAGCATCTCCTTTCTACCATTAAAAGCACTTTGTCTTGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639359.1 True 2263 lncRNA 0.40 2 30496040 30500331

Neighbor

gene id symbol gene type direction distance location
mtor mtor coding downstream 296200 30103231 ~ 30199840 (-)
mapk13 LOC104963623,LOC104919509,LOC106518909 coding downstream 536269 29947906 ~ 29959771 (-)
brpf3b LOC100699843,LOC106518910,LOC103372699,LOC104963634 coding downstream 549807 29928188 ~ 29946233 (-)
bcas2 bcas2 coding downstream 645086 29846882 ~ 29850954 (-)
tmem240a tmem240,tmem240a,LOC108275582,LOC107593924,LOC107687438,LOC106572021 coding downstream 658513 29822872 ~ 29837527 (-)
LOC120559739 rnf223 coding upstream 41170 30541501 ~ 30547082 (-)
dennd2c NA coding upstream 63229 30563560 ~ 30585652 (-)
ampd1 ampd1 coding upstream 87178 30587509 ~ 30603153 (-)
csde1 csde1,LOC102790132 coding upstream 111762 30612093 ~ 30630548 (-)
tmco4 tmco4,LOC102793724 coding upstream 149781 30650112 ~ 30658892 (-)
G54272 NA non-coding downstream 593320 29900560 ~ 29902720 (-)
G54189 NA non-coding downstream 673223 29822520 ~ 29822817 (-)
G54185 atad3a,LOC103366266,LOC105898932 non-coding downstream 680590 29814350 ~ 29815450 (-)
LOC120559594 NA non-coding downstream 817236 29676371 ~ 29678804 (-)
G54038 ddost,LOC107687429 non-coding downstream 972578 29521790 ~ 29523462 (-)
LOC120559660 NA non-coding upstream 118935 30619266 ~ 30619890 (-)
G54407 NA non-coding upstream 133601 30633932 ~ 30635350 (-)
G54414 NA non-coding upstream 155339 30655670 ~ 30706761 (-)
G54444 NA non-coding upstream 284762 30785093 ~ 30785797 (-)
G54470 NA non-coding upstream 388687 30889018 ~ 30889218 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other downstream 423341 29971196 ~ 30072699 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other downstream 730167 29752661 ~ 29765873 (-)
clcnk clcnka,LOC104952128,LOC102786725 other downstream 1003065 29474503 ~ 29492975 (-)
LOC120559896 slc25a45 other downstream 1140156 29350078 ~ 29355884 (-)
ajap1 ajap1 other downstream 1466719 28971286 ~ 29029321 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 1792611 32292942 ~ 32323275 (-)
LOC120559593 plxnb1,LOC103373813,LOC107100289 other upstream 2090652 32590983 ~ 32666459 (-)
G54756 LOC107088573,LOC106566972 other upstream 2267026 32767357 ~ 32773486 (-)
G54834 NA other upstream 2379862 32880193 ~ 32887290 (-)
zgc:158296 NA other upstream 2466304 32966635 ~ 32971163 (-)

Expression


Co-expression Network