LOC120559830


Basic Information

Item Value
gene id LOC120559830
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26414885 ~ 26423059 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639369.1
GGATTTGCAGTCCTGAAATGAGAATATTTGATAGACCGATTCCTGTTTGGAAGCCATTTTGAAAGCCCCGTGATCCCTGATTTCTTTCTGTCTGCCATCCTGTTACTCTCAGCTGACCGAGTGAAGCCTCAGATGTGGGACACCTGCACATgagctgtccgtggtgctgttTGTGCTCTGCAGCAGGCCAGCTGCAACATGCGTTCATCATATCAGCAACGAGTTGCATCCCTTCACAGCCTGCTGAACATGCTCATCTGGAATCAAGCTGTTAAATGAGCTAGAAACTTGAAATCTGTACACGTATGCGTTCGTGAGAAATCAAGCACACAGATCTGAATAAATAGTgcaattattttaatgttttcatcTGAAGGTGGGGCCTATTTTGTATAGAAGTACTTGAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639369.1 True 409 lncRNA 0.44 3 26414885 26423059

Neighbor

gene id symbol gene type direction distance location
LOC120559112 shmt2,LOC103362774,LOC102296343,LOC102798994 coding upstream 21152 26383591 ~ 26393733 (+)
LOC120559111 LOC104966951,LOC104926426,LOC101067761,LOC103384493 coding upstream 40556 26366090 ~ 26374329 (+)
LOC120559018 NA coding upstream 140097 26266807 ~ 26274788 (+)
LOC120559565 NA coding upstream 154931 26247997 ~ 26259954 (+)
rprd1b rprd1b coding upstream 167603 26236839 ~ 26247282 (+)
LOC120559752 slc32a1,LOC103362770,LOC104926430,LOC101482923,LOC102798107,LOC102295106 coding downstream 1054 26424113 ~ 26427752 (+)
bpifcl NA coding downstream 5419 26428478 ~ 26435464 (+)
LOC120559781 chmp4b,LOC103362760,LOC106511320 coding downstream 116841 26539900 ~ 26546310 (+)
eif2s2 eif2s2 coding downstream 124097 26547156 ~ 26553116 (+)
LOC120559568 srsf6,LOC103156038,LOC103362762,LOC103468026,LOC106952897 coding downstream 130800 26553859 ~ 26558935 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding upstream 12457 26397199 ~ 26402428 (+)
G53239 NA non-coding upstream 50048 26364442 ~ 26364837 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding upstream 84257 26330084 ~ 26330628 (+)
G53222 NA non-coding upstream 85269 26325919 ~ 26329616 (+)
G53221 NA non-coding upstream 89417 26325221 ~ 26325468 (+)
G53285 NA non-coding downstream 204237 26627296 ~ 26631607 (+)
G53418 NA non-coding downstream 397602 26820661 ~ 26823621 (+)
G53445 NA non-coding downstream 566770 26989829 ~ 26993682 (+)
G53455 LOC108233118,LOC101063193,LOC101159349,LOC103384990,LOC104941321,LOC103359395 non-coding downstream 715072 27138131 ~ 27207789 (+)
G53461 NA non-coding downstream 734411 27157470 ~ 27159414 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other upstream 31838 26378192 ~ 26383047 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other upstream 61422 26352460 ~ 26353463 (+)
G53096 ybx1 other upstream 338221 26071585 ~ 26076664 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 666564 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 1457555 24953442 ~ 24957330 (+)
atp5f1e NA other downstream 19991 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 60473 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other downstream 67383 26490442 ~ 26523888 (+)
G53305 NA other downstream 377037 26800096 ~ 26800746 (+)
si:dkey-20d21.12 LOC101471973,LOC106098224,LOC107390607 other downstream 761435 27184494 ~ 27187943 (+)

Expression


Co-expression Network