LOC120559849


Basic Information

Item Value
gene id LOC120559849
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29050512 ~ 29067899 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639374.1
gaaggatggagagagagtggaCAAAGAGAGGGACCTGGAAGAACcaggGAAGGACAATCTCTGTTCGGAGTCATCATCACTGACAGGAGTCGCACAACAGCCATTTTCAGCAGTCTTATCCATGAGGCATGGTGGGAAATGCCAGCCAATGACATTCAGCTCAGTAAAGGGTACATCAGTCCATCTGCTTTGCAGTTCGCAGCTGTCTGACCACTTACCAAACCCTGTCTGGGCATCATTACCGTATGTTCGCCGTCCTTCCGACAACTGGACCCTATGTGAGACAAATACAAAGGGAGCCCTGAGGTCATCCAGGATGGGAAGTACTAGAGAGAAAAAGGACAAAACTACTGTTACGTTACTGTGTGCCACGCTCACTGCTACTGCACTACTGTGGCAATGTGTCCTTGCGTTccatatcatcatcaatacatACAGCATGACATTTAAGCCATGACCAAAGGCTTTTCATaattccatgtctttttttcccttcacaGATATCAAATGCCATGATCATGCAAATGGGACACACGCATCCTTCTTAAAGTTTGCAGATATCCGGTTGCCAATTAGCAAATGGTAAAATCTAACCCACACACCCGGCCACAGCAAAGGTATTCAGCAGAAGTGAATCTCCAATCAGCAAAGTGCCAGGGTACACCACAGTGTTTTACATTAACAAGAAGAACTAAAGCAATGTGTAAGTAAGGGAAgacataaatcatttaaatcacCTGTCTTGAAACCTTGAAGGAATTTATGGCCGAGTGTGGAATGGGAAGATGGGGGCGATGGTGTGGCAGTGGGGCTGTCTGAGTGAGCTTTACAAGCCTCTCAATAAACATATGAATAATTTTGGGGGAGTCGTTAGAAGCCGTCTGTTCTCTTGATCTTAAATCGATGCATTGAGGATGAATTAAATGTCGCAGAGAGGGGAATGAGTAAGAGGAGAAGGAAGTAGCTGAACTGAGGCCATATTACAAGGTGATTAAAACAAGTGTCTCTGTGAATTGCTACACTGGGAGGCTGGCGAACAATGAGGAACAGGGGTGTAAAAGAAAAAGGCAGGAGGCTATCTTTTAGCCCTGATTTGTTGAGGAAGCTCTTTTTTCAGATTTCAGctattacatttttgtatttgcaaAGAGGTAAAAAGTGTTCTACATGCTGGTGGACACATGCGTCAGCACAGGCGGGACTCTAACTGCTTCCTTTGAACATAATACTCAAATACTATTAAGGTGTTTATCCAAATGTTCCAACCCCTTGACAAATAGTACACACAGCTTAATGATGAGTGAAGTGAGTATTAATGTTAAACTGTGCCCAGTTTCTgccacccccatgaggaattctaagtaatgacaacaaaactgttggcgcgtccactggatacaagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639374.1 True 1403 lncRNA 0.44 3 29050512 29067899

Neighbor

gene id symbol gene type direction distance location
dffb dffb coding downstream 532550 28510901 ~ 28517962 (-)
b3gnt7l LOC103356136,LOC104946517,LOC101486029 coding downstream 547607 28500573 ~ 28502905 (-)
LOC120558751 lrrc47 coding downstream 591941 28454908 ~ 28458571 (-)
LOC120558756 lrrc47 coding downstream 611484 28435512 ~ 28439028 (-)
LOC120558755 lrrc47,LOC102780667 coding downstream 648663 28400147 ~ 28401849 (-)
LOC120559029 LOC102787320,LOC102195592,LOC100705795,LOC102314501 coding upstream 82504 29150403 ~ 29154225 (-)
gabrd gabrd,LOC102778860 coding upstream 90130 29158029 ~ 29180691 (-)
LOC120559893 LOC104921444,LOC103367276,LOC104966657,LOC106952640,LOC103151253,LOC106934176 coding upstream 255966 29323865 ~ 29337598 (-)
LOC120559132 LOC102197101,LOC101463906,LOC102310392,LOC100702039 coding upstream 525149 29593048 ~ 29609420 (-)
ttll10 NA coding upstream 542010 29609909 ~ 29650365 (-)
G53886 NA non-coding downstream 82437 28964643 ~ 28968075 (-)
G53881 NA non-coding downstream 128871 28921431 ~ 28921641 (-)
G53851 NA non-coding downstream 441938 28608269 ~ 28608574 (-)
G53800 NA non-coding downstream 602306 28365496 ~ 28448206 (-)
G53799 NA non-coding downstream 627144 28343661 ~ 28423368 (-)
G53972 gnb1,gnb1b,LOC107385217,LOC103044197,LOC106516123,LOC107666091 non-coding upstream 183064 29250963 ~ 29294161 (-)
G53994 NA non-coding upstream 280459 29348358 ~ 29349210 (-)
LOC120558378 NA non-coding upstream 295129 29363028 ~ 29373248 (-)
G53997 NA non-coding upstream 303448 29371347 ~ 29372824 (-)
G54000 NA non-coding upstream 307120 29375019 ~ 29375422 (-)
ajap1 ajap1 other downstream 21191 28971286 ~ 29029321 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other downstream 863985 28153182 ~ 28186527 (-)
LOC120558759 NA other downstream 1119997 27845264 ~ 27930515 (-)
xpc xpc other downstream 1389866 27644783 ~ 27660646 (-)
hyal3 LOC103359396 other downstream 1850601 27189048 ~ 27199911 (-)
LOC120559896 slc25a45 other upstream 282179 29350078 ~ 29355884 (-)
clcnk clcnka,LOC104952128,LOC102786725 other upstream 406604 29474503 ~ 29492975 (-)
cdk11b LOC103366252,LOC101466870,LOC100697195 other upstream 684762 29752661 ~ 29765873 (-)
tafa5l LOC102786421,LOC104919510,LOC100700110,LOC103384901,LOC106518908,LOC107086703 other upstream 903297 29971196 ~ 30072699 (-)
LOC120558955 LOC104919264,LOC102777709,LOC100695043,LOC102209489,LOC103373809,LOC103152775,LOC101470785,LOC106963186 other upstream 3225043 32292942 ~ 32323275 (-)

Expression


Co-expression Network