LOC120560799


Basic Information

Item Value
gene id LOC120560799
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 210742 ~ 212383 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU78000
CTTGGCTGTGTTCACTTAATACTTTTAGCTGATTGTCAGTTTGATTATCAATTCTCTGCAGCAGGATCTGTGAACCTACCTCATCTCGGCACTGACAAACTGCCTGTATCGgtACAGTATAGTGAAATACAAGGACAAAGAGACCCAGCAGAGAGACCCCAAGACCCACCGCCAGAATCCTTCTTGCCGTTCCTTCTTGCTAACCTGGACAACCCTCCCTGCAGAGTGCGCCGTGCAAATTTTTCCAAATGTAACCGGAAGAATACTTTTACTGTCCATCCCAGCTATCATTTTTGGGCACCTTGGATTGGGCAAGGCACACGAAGGTCCAACACTGTGCTAAACACAGAGTTTTTAAAAGCTCAAGGTCCAAGAAACTCAGCAGAGGCAGATGACCAATATTACTGAAGACAGACTCTCAAATGAATTGATGAATTTGAAGGTGGATGCAGTACGTACACTCTGTAATGAATGTGGTGTCGACTCTTGTGGTTCTAAGATAGATCTAATTCTGCGCCTCAGAACCGAAATGCAAAATAGACAGGCCTACGACAGTGTTTCAGAAGATCTGGGGAGCATCAGGTGGTTTGGCTGCCATCATGTGTCCATGCGGTGTTTTGTACAGCTTGAAGTTTAACATCAGAGCAGAAGGCCCTAGAGACTTTGCAGATATGCTTCTGTCATGGAAACATATGCCCAATATATCAGTCTATGACTTTGCACGAGGTCTTGTAAACCACACCAATGTGAGAGTGCCAGAAAATCCACCATTCCAGCCAAATGAAGGCCGTCTTGCTCCTCCAACCCCTGAGAACATACAGGCTGCCAAGGACCGAACACTGAAGATCCACCTTCCGTGGCTTTTGGAGCCAAACACTGAAAACTTTGAAGATGATAGTCATCCGGTTACCAAATCCTCTCAACATTATGTCTTGTGTGACAAGCTACATGAAGGTAACAGCAAGGATGAGAAGGACATGCTCAGGAGAATTGAACTTGTACCGGAGCTTGCAGGTCAGCTCAACAGCCAAGTGGCTGAACAGTTCTTCGCAAATATGCGGAAGAA
>TU78001
CTTGGCTGTGTTCACTTAATACTTTTAGCTGATTGTCAGTTTGATTATCAATTCTCTGCAGCAGGATCTGTGAACCTACCTCATCTCGGCACTGACAAACTGCCTGTATCGgtACAGTATAGTGAAATACAAGGACAAAGAGACCCAGCAGAGAGACCCCAAGACCCACCGCCAGAATCCTTCTTGCCGTTCCTTCTTGCTAACCTGGACAACCCTCCCTGCAGAGTAACCGGAAGAATACTTTTACTGTCCATCCCAGCTATCATTTTTGGGCACCTTGGATTGGGCAAGGCACACGAAGGTCCAACACTGTGCTAAACACAGAGTTTTTAAAAGCTCAAGGTCCAAGAAACTCAGCAGAGGCAGATGACCAATATTACTGAAGACAGACTCTCAAATGAATTGATGAATTTGAAGGTGGATGCAGTACGTACACTCTGTAATGAATGTGGTGTCGACTCTTGTGGTTCTAAGATAGATCTAATTCTGCGCCTCAGAACCGAAATGCAAAATAGACAGGCCTACGACAGTGTTTCAGAAGATCTGGGGAGCATCAGGTGGTTTGGCTGCCATCATGTGTCCATGCGGTGTTTTGTACAGCTTGAAGTTTAACATCAGAGCAGAAGGCCCTAGAGACTTTGCAGATATGCTTCTGTCATGGAAACATATGCCCAATATATCAGTCTATGACTTTGCACGAGGTCTTGTAAACCACACCAATGTGAGAGTGCCAGAAAATCCACCATTCCAGCCAAATGAAGGCCGTCTTGCTCCTCCAACCCCTGAGAACATACAGGCTGCCAAGGACCGAACACTGAAGATCCACCTTCCGTGGCTTTTGGAGCCAAACACTGAAAACTTTGAAGATGATAGTCATCCGGTTACCAAATCCTCTCAACATTATGTCTTGTGTGACAAGCTACATGAAGGTAACAGCAAGGATGAGAAGGACATGCTCAGGAGAATTGAACTTGTACCGGAGCTTGCAGGTCAGCTCAACAGCCAAGTGGCTGAACAGTTCTTCGCAAATATGCGGAAGAA
>XR_005639514.1
CTTAATACTTTTAGCTGATTGTCAGTTTGATTATCAATTCTCTGCAGCAGGATCTGTGAACCTACCTCATCTCGGCACTGACAAACTGCCTGTATCGgtACAGTATAGTGAAATACAAGGACAAAGAGACCCAGCAGAGAGACCCCAAGACCCACCGCCAGAATCCTTCTTGCCGTTCCTTCTTGCTAACCTGGACAACCCTCCCTGCAGAGTGCGCCGTGCAAATTTTTCCAAATGTAACCGGAAGAATACTTTTACTGTCCATCCCAGCTATCATTTTTGGGCACCTTGGATTGGGCAAGGCACACGAAGGTCCAACACTGTGCTAAACACAGAGTTTTTAAAAGCTCAAGGTCCAAGAAACTCAGCAGAGGCAGATGACCAATATTACTGAAGACAGACTCTCAAATGAATTGATGAATTTGAAGGTGGATGCAGTACGTACACTCTGTAATGAATGTGGTGTCGACTCTTGTGGTTCTAAGATAGATCTAATTCTGCGCCTCAGAACCGAAATGCAAAATAGACAGGCCTACGACAGTGTTTCAGAAGATCTGGGGAGCATCAGGTGGTTTGGCTGCCATCATGTGTCCATGCGGTGTTTTGTACAGCTTGAAGTTTAACATCAGAGCAGAAGGCCCTAGAGACTTTGCAGATATGCTTCTGTCATGGAAACATATGCCCAATATATCAGTCTATGACTTTGCACGAGGTCTTGTAAACCACACCAATGTGAGAGTGCCAGAAAATCCACCATTCCAGCCAAATGAAGGCCGTCTTGCTCCTCCAACCCCTGAGAACATACAGGCTGCCAAGGACCGAACACTGAAGATCCACCTTCCGTGGCTTTTGGAGCCAAACACTGAAAACTTTGAAGATGATAGTCATCCGGTTACCAAATCCTCTCAACATTATGTCTTGTGTGACAAGCTACATGAAGGTAACAGCAAGGATGAGAAGGACATGCTCAGGAGAATTGAACTTGTACCGGAGCTTGCAGGTCAGCTCAACAGCCAAGTGGCTGAACAGTTCTTCGCAAATATGCGGAAGAACAATTATTTCATT
>XR_005639515.1
CTTAATACTTTTAGCTGATTGTCAGTTTGATTATCAATTCTCTGCAGCAGGATCTGTGAACCTACCTCATCTCGGCACTGACAAACTGCCTGTATCGgtACAGTATAGTGAAATACAAGGACAAAGAGACCCAGCAGAGAGACCCCAAGACCCACCGCCAGAATCCTTCTTGCCGTTCCTTCTTGCTAACCTGGACAACCCTCCCTGCAGAGTAACCGGAAGAATACTTTTACTGTCCATCCCAGCTATCATTTTTGGGCACCTTGGATTGGGCAAGGCACACGAAGGTCCAACACTGTGCTAAACACAGAGTTTTTAAAAGCTCAAGGTCCAAGAAACTCAGCAGAGGCAGATGACCAATATTACTGAAGACAGACTCTCAAATGAATTGATGAATTTGAAGGTGGATGCAGTACGTACACTCTGTAATGAATGTGGTGTCGACTCTTGTGGTTCTAAGATAGATCTAATTCTGCGCCTCAGAACCGAAATGCAAAATAGACAGGCCTACGACAGTGTTTCAGAAGATCTGGGGAGCATCAGGTGGTTTGGCTGCCATCATGTGTCCATGCGGTGTTTTGTACAGCTTGAAGTTTAACATCAGAGCAGAAGGCCCTAGAGACTTTGCAGATATGCTTCTGTCATGGAAACATATGCCCAATATATCAGTCTATGACTTTGCACGAGGTCTTGTAAACCACACCAATGTGAGAGTGCCAGAAAATCCACCATTCCAGCCAAATGAAGGCCGTCTTGCTCCTCCAACCCCTGAGAACATACAGGCTGCCAAGGACCGAACACTGAAGATCCACCTTCCGTGGCTTTTGGAGCCAAACACTGAAAACTTTGAAGATGATAGTCATCCGGTTACCAAATCCTCTCAACATTATGTCTTGTGTGACAAGCTACATGAAGGTAACAGCAAGGATGAGAAGGACATGCTCAGGAGAATTGAACTTGTACCGGAGCTTGCAGGTCAGCTCAACAGCCAAGTGGCTGAACAGTTCTTCGCAAATATGCGGAAGAACAATTATTTCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78000 True 1066 TUCP 0.46 5 210742 212370
TU78001 False 1041 TUCP 0.46 5 210742 212370
XR_005639514.1 False 1065 lncRNA 0.45 5 210756 212383
XR_005639515.1 False 1040 lncRNA 0.45 5 210756 212383

Neighbor

gene id symbol gene type direction distance location
ccdc157 ccdc157 coding upstream 23398 183677 ~ 187344 (+)
LOC120560558 brd3,LOC101484219,LOC107386174,LOC101063386,LOC103397963 coding upstream 111238 79632 ~ 99504 (+)
LOC120560800 NA coding downstream 653 213036 ~ 216499 (+)
LOC120561159 rasal1 coding downstream 10758 223141 ~ 244194 (+)
syn1 syn1,LOC102209911 coding downstream 128594 340977 ~ 356353 (+)
unm_hu7912 LOC102295462,LOC101483439,LOC103375604,LOC100694328 coding downstream 154998 367381 ~ 376915 (+)
gapvd1 gapvd1,LOC102777314 coding downstream 168789 381172 ~ 432629 (+)
G58011 NA non-coding upstream 66 209281 ~ 210676 (+)
G57994 NA non-coding upstream 84479 121847 ~ 126263 (+)
LOC120560560 NA non-coding upstream 100681 108566 ~ 110061 (+)
G57961 NA non-coding upstream 193825 15528 ~ 16917 (+)
G58021 dtx1 non-coding downstream 33508 245891 ~ 252072 (+)
G58024 dtx1,LOC106585516,LOC106579922 non-coding downstream 45185 257568 ~ 259697 (+)
G58057 NA non-coding downstream 329507 541890 ~ 572532 (+)
G58151 NA non-coding downstream 666871 879254 ~ 882251 (+)
G58156 NA non-coding downstream 679714 892097 ~ 892439 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other downstream 577022 789405 ~ 837861 (+)
dock5 dock5 other downstream 2061295 2273678 ~ 2312665 (+)
lman2lb NA other downstream 2665991 2878374 ~ 2883861 (+)
LOC120560521 tjp2 other downstream 3222782 3435165 ~ 3522756 (+)
G59086 NA other downstream 3904896 4117279 ~ 4117631 (+)

Expression


Co-expression Network