lmx1bb (lmx1b,LOC102213269,LOC100696266)


Basic Information

Item Value
gene id lmx1bb
gene name lmx1b,LOC102213269,LOC100696266
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 789405 ~ 837861 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU78181
TCAGTAGGATTGTCACAGAGGGATGTTCTTTGTTCACTTAAAGCAAAACAAGTAGATATTGAAGCCACTGATTACACACCCTCAAAACCAAATAACAGTGAATTTATACAGTGCATGATCAATTGTAAACTAAAACTTTTTGTAAGCCCCCTTGGTTAAGATGTGGTGTTTGGACTGTTTCTTCTTTCCACTACATGGATTTCCATGTTCACCGTTAGCATTTTGATCACTTTCAATAGGTTTAGATATTGTGTTAATAGTAAATAGGTGCAGCATGTCTGCAAGAGTGACTGTACAGTTGTGTATGTATGAGAGTTTGTGGTGAGAAAGAATTGTTTCGAGGAGAAAAAAAGGCGGAGAATTTGTTGGACAAGTAGGATCAGTAAAGTGTAAATACTTTCCCCAGGCAAATTGGATGTGCATGTTACAAAATGGAAAGCATTCTATTTATTTAACTATAACAGGCTCTTGAAGGTGCATATTAAAACTGAAAAGCTTTATTTAAAAAGGAgagcattttttgttgttgttgagcaaTTAGCGAGTTCATGAGTGTCACAGCTCATCTGTATGCCTTTTTAATATGAAGATTAACCCTtttgtttcgttttttttttcttcagccaaGCTGTAAATGAGCAATGTTGCTATTTATTTCGTACAGACCATAAACCTTTTGTTGTCATTGTCATATGCGCATTCTCAAAATGTTAAAGTTGCTAATTGACCAAAGTTGACTGGTTTGATGAATAAACAATGTCTTTCTCCtgataatattaaataaatgccaTTCAGTGATCATTCACGTGGTAAACATGTCGAGTCCCAAATTGTCACCTGCTTCAGTGAAAAGCCTACAGCTCATTACAGGGGGATTTGTTTAGCCAAGTTAGCGGCGTGGCTTAAGGGTCTAACGATGTCGgcctattggatggattgctacCAAATCTGGTACATCCATTCACTTTCCACAGAGGATTtgatcctaatgactttggttaTCTCCTGACTTTTCTTCTTACACCGATGCTTTCAAAGACATTCCCATCGACGGTACCATGTGTGTAGTGCTACTCTAAGTTAGCAtgaactaagatggtgaacgtGGTAAACATACCTACTAGAAaacagcatgttagcattgtcgtTATTAGCTGGGCTCTGGTTTCAGGGTTGCCATgggtgcacgtgtgtgtgcattgACTAGCAAATCAGAATGatatttaaaaaactgtaaataaaaaatttaaaaatgtgagACAGCTACTCTGAACACTAAAACG
>XM_039804573.1
tatttttttttctccacttttATTGtgtcctttctgtctctccacGCTTCTCCTGACACATTTGGGATTTGTGTAGCCCGGCTAACACTGCCGTTACCTTTTAACTATTGCGAGCAAcagagttttttgttgttgttgttgcatttcATAGTTAGTCATTTTCTAGTTTTGCTCCTCCGAGCTGCAGGCTGTTGTCACACGGAACTCGGGCGGCTTTCAACAGGTTTCCAGCCTTCGCTTCCTCGCTTTGCCTCcagacagctgtgtgtgtgcccgCCCGGGATCCTCCCGTCCAGTCTGACCGTATTCTTATGGATATTGCAACAGGTCTGGTGTCACTGGAGCGCCTCTCCGCGGGAGAACAGTCCGAGACGTGCATCATGCTGGACGGCATAAAAATGGAAGATCATCCCCTGCGATCGGGACAAGCCACGCTCGGAGTCATGCTCGGGACTGACTGTCACCATCCCTCGGTGTGTGAAGGGTGCCAGCGTCCCATCTCCGACCGCTTCCTGATGAGAGTCAACGACTCGTCGTGGCACGAGGAGTGTTTGCAGTGCACCGTGTGTCAGCAGCCCCTCACCACCAGCTGTTACTTCCGAGAAAGGAAACTTTACTGCAAACACGACTACCAACAGTTGTTTGCGACCAAGTGCAGCGGCTGCATGGAGAAGATCGCCCCCACAGAGTTTGTAATGCGCGCCCTGGAGTGCGTCTACCACCTGaactgcttctgctgctgcgtGTGCGACCGGCAGCTGAGGAAGGGCGACGAGTTTGTCCTGAAGGAGGGTCAGCTGCTGTGCAAGATCGACTACGAGAGGGAGAAGGACTTACTCAGCTCGGTTAGCCCGGATGACTCAGACTCAGAGAAAAGTGACGATGAGGAGTTGGACATCAAGCCAGAGAAAGGCATAGGAGGCCAGGGGAAGGGGGATGATGGGAAGGATCCCAGGAGGCCCAAAAGGCCCCGTACCATCCTGACCACTCAACAGAGACGGGCCTTCAAGGCCTCCTTTGAGGTTTCCTCAAAACCCTGCAGAAAGGTGAGGGAGACGCTGGCTGCGGAGACGGGACTCAGTGTTCGGGTGGTGCAGGTCTGGTTTCAGAACCAGAGAGCTAAGATGAAGAAGTTGGCAAGaagacagcagcaacaacaagaACAACAGAATTCTCAGAGACTTGGCCAAGAGGTAATGTCCAATCGGATGGAGGGAATGATGAACTCCTTCACGCCGCTGGCTCCGCCACCGCAGCAGCTGCTCGCCATGGATCAGAACGGTTACAGCACAGACCCGTTCCAACAGGGGCTCACCCCCCCACAGATGCCCGGGGACCACATGAACCCATATGGTAATGATTCCGCATTCCATGACATAGACAGCGACACGTCTTTAACCAGCCTCAGTGACTGCTTCATGGCATCGTCGGACGTCAACTCCATGCAGGCCCGCGTGGGGAACCCCATCGACCGCCTCTACTCCATGCAGAACTCTTACTTTGCATCATGAAAGAGAAGAGTGAAAACACATCAGCACAGAATAAACTGCCCATCTCAACCTAAAGCGCGATGGCCAGGAGTTTCCACACCAACACGGACACGACAGAAGAAAACCTCGCAGTAGCTCCTGGTTATGTGCTGAAAGCTTACTCAaagatagtaaaaaaaaaaaccactcgTTTGTAGGACAGTGAAGATTCctgaggggagggtggggggacTTAAATATTGTTTAGAGATTATTCAGTAGGATTGTCACAGAGGGATGTTCTTTGTTCACTTAAAGCAAAACAAGTAGATATTGAAGCCACTGATTACACACCCTCAAAACCAAATAACAGTGAATTTATACAGTGCATGATCAATTGTAAACTAAAACTTTTTGTAAGCCCCCTTGGTTAAGATGTGGTGTTTGGACTGTTTCTTCTTTCCACTACATGGATTTCCATGTTCACCGTTAGCATTTTGATCACTTTCAATAGGTTTAGATATTGTGTTAATAGTAAATAGGTGCAGCATGTCTGCAAGAGTGACTGTACAGTTGTGTATGTATGAGAGTTTGTGGTGAGAAAGAATTGTTTCGAGGAGAAAAAAAGGCGGAGAATTTGTTGGACAAGTAGGATCAGTAAAGTGTAAATACTTTCCCCAGGCAAATTGGATGTGCATGTTACAAAATGGAAAGCATTCTATTTATTTAACTATAACAGGCTCTTGAAGGTGCATATTAAAACTGAAAAGCTTTATTTAAAAAGGAgagcattttttgttgttgttgagcaaTTAGCGAGTTCATGAGTGTCACAGCTCATCTGTATGCCTTTTTAATATGAAGATTAACCCTtttgtttcgttttttttttcttcagccaaGCTGTAAATGAGCAATGTTGCTATTTATTTCGTACAGACCATAAACCTTTTGTTGTCATTGTCATATGCGCATTCTCAAAATGTTAAAGTTGCTAATTGACCAAAGTTGACTGGTTTGATGAATAAACAATGTCTTTCTCCtgataatattaaataaatgccaTTCAGTGATCATTCACGTGGTAAACATG

Function

symbol description
lmx1b Enables DNA-binding transcription factor activity and sequence-specific double-stranded DNA binding activity. Involved in regulation of transcription, DNA-templated. Located in nucleus. Implicated in focal segmental glomerulosclerosis and nail-patella syndrome.

NR:

description
LIM/homeobox protein LMX-1.2 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09371 LMX1; LIM homeobox transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU78181 False 1283 lncRNA 0.37 1 836579 837861
XM_039804573.1 True 2562 mRNA 0.47 8 789405 837396

Neighbor

gene id symbol gene type direction distance location
mvb12bb LOC104950954 coding upstream 16192 732697 ~ 773213 (+)
pbx3b pbx3 coding upstream 195600 532813 ~ 593805 (+)
gapvd1 gapvd1,LOC102777314 coding upstream 356776 381172 ~ 432629 (+)
unm_hu7912 LOC102295462,LOC101483439,LOC103375604,LOC100694328 coding upstream 412490 367381 ~ 376915 (+)
syn1 syn1,LOC102209911 coding upstream 433052 340977 ~ 356353 (+)
zbtb34 zbtb34,LOC100694860,LOC102780544,LOC102300203 coding downstream 32170 870031 ~ 877817 (+)
adamts13 adamts13 coding downstream 191396 1029257 ~ 1052283 (+)
LOC120560446 LOC104936599 coding downstream 268103 1105964 ~ 1127084 (+)
si:dkeyp-14d3.1 tmem132c coding downstream 319609 1157470 ~ 1329623 (+)
glt1d1 glt1d1 coding downstream 533923 1371784 ~ 1396195 (+)
G57999 NA non-coding upstream 186225 166018 ~ 603180 (+)
G58057 NA non-coding upstream 216873 541890 ~ 572532 (+)
G58024 dtx1,LOC106585516,LOC106579922 non-coding upstream 529708 257568 ~ 259697 (+)
G58021 dtx1 non-coding upstream 537333 245891 ~ 252072 (+)
G58011 NA non-coding upstream 578729 209281 ~ 210676 (+)
G58151 NA non-coding downstream 41393 879254 ~ 882251 (+)
G58156 NA non-coding downstream 54236 892097 ~ 892439 (+)
G58157 NA non-coding downstream 61032 898893 ~ 899506 (+)
G58209 crat,LOC107393635,LOC102215149,LOC101477431 non-coding downstream 215154 1053015 ~ 1053413 (+)
G58215 ier5l,LOC103375736 non-coding downstream 223168 1061029 ~ 1062510 (+)
LOC120560799 NA other upstream 577022 210742 ~ 212383 (+)
dock5 dock5 other downstream 1435817 2273678 ~ 2312665 (+)
lman2lb NA other downstream 2040513 2878374 ~ 2883861 (+)
LOC120560521 tjp2 other downstream 2597304 3435165 ~ 3522756 (+)
G59086 NA other downstream 3279418 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 3586280 4424141 ~ 4429981 (+)

Expression


Co-expression Network