G58382


Basic Information

Item Value
gene id G58382
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2074820 ~ 2089793 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU78501
acacacacacacacacacacacacacacacacacacacacacagttttgtcatgaaaagcacttacagttaaaaaatagaaaacccaatatatatttttccattGATTATGCCGTAAATTTAGGGGAATCAAAGCTGTGATACAGCAAAAACTGGCCATGTAATcctcaatttaaaagatattcTTATGTAACAACTGCCCCTACagactatataaaaaaaatggatcAAACAAAAGCATCCTtgtacaaaagaaaataaatcaattatgGTAATAAAAATAAGAGtacaatgtaaatatatatattcatatttataaTTTTCTAACTGTATTTACAAGATCGTGAATGATGCAAAGGACCACGGGGTGCTGCGTGTCCCTTGGTAGTACAGTATATTCTCTGGATTTGGTCTGAAAAGCAGAACATTGTCCTTCACTACTGAGGAAACAACcatggaggggaaaaaaacaaaaactaaatctgACATTATCAGTCAGTCCTTTTGATTTTCCTGACCAGTGGAATGTCCAAAGTGGAGAGAAGAGTgggagtgtttgttttttttgtctcttttttctgaCACTGTGACAAACTGCCACTCCTGTTAATACAAAGTGCCCCATAAACATAGTCACCACCAAGAATCGGAAAAACGGCTGCACTCCTCAGTCCATGAGTTCCGACAGGTTATACGGGGGTGCCTCTCCAAGCTCCTTTCTCGCAGagcaccagtgtttttttttttagcttaatctCTGGGAATGTGGGGATAGAGTCCAACCCCATGAGGCAGGGAGCGGAGAAAATATCGAGGTTTGTCTGAATGGAGATGAGGAATCAGCGTTTCTTAATGGCTGCCCCGTTGGAGTGGGGAGGGAACTTTGGCAGGCAGGGCTCCTCGGCTCCGGCATCGTGAGAGAACACAGAGTCCTCGCCTGAGGAGCAGGTGGAGCTGCGGGTGTCTGGGTAGCTGGGGGAATATTGGTCCAGGGGAACGGACAGCTCCAAATACTC
>TU78502
acacacacacacacacacacacacacacacacacacacacacactgttttgtcatgaaaagcacttacagttaaaaaatagaaaacccaatatatatttttccattGATTATGCCGTAAATTTAGGGGAATCAAAGCTGTGATACAGCAAAAACTGGCCATGTAATcctcaatttaaaagatattcTTATGTAACAACTGCCCCTACagactatataaaaaaaatggatcAAACAAAAGCATCCTtgtacaaaagaaaataaatcaattatgGTAATAAAAATAAGAGtacaatgtaaatatatatattcatatttataaTTTTCTAACTGTATTTACAAGATCGTGAATGATGCAAAGGACCACGGGGTGCTGCGTGTCCCTTGGTAGTACAGTATATTCTCTGGATTTGGTCTGAAAAGCAGAACATTGTCCTTCACTACTGAGGAAACAACcatggaggggaaaaaaacaaaaactaaatctgACATTATCAGTCAGTCCTTTTGATTTTCCTGACCAGTGGAATGTCCAAAGTGGAGAGAAGAGTgggagtgtttgttttttttgtctcttttttctgaCACTGTGACAAACTGCCACTCCTGTTAATACAAAGTGCCCCATAAACATAGTCACCACCAAGAATCGGAAAAACGGCTGCACTCCTCAGTCCATGAGTTCCGACAGGTTATACGGGGGTGCCTCTCCAAGCTCCTTTCTCGCAGagcaccagtgtttttttttttagcttaatctCTGGGAATGTGGGGATAGAGTCCAACCCCATGAGGCAGGGAGCGGAGAAAATATCGAGGTTTGTCTGAATGGAGATGAGGAATCAGCGTTTCTTAATGGCTGCCCCGTTGGAGTGGGGAGGGAACTTTGGCAGGCAGGGCTCCTCGGCTCCGGCATCGTGAGAGAACACAGAGTCCTCGCCTGAGGAGCAGGTGGAGCTGCGGGTGTCTGGGTAGCTGGGGGAATATTGGTCCAGGGGAACGGACAGCTCCAAATACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78501 False 1015 lncRNA 0.42 2 2074820 2089793
TU78502 True 1017 lncRNA 0.42 2 2074820 2089793

Neighbor

gene id symbol gene type direction distance location
ccdc92 ccdc92 coding upstream 20339 2037572 ~ 2054481 (+)
ncor2 ncor2 coding upstream 126105 1804636 ~ 1948715 (+)
ep400 ep400 coding upstream 303147 1736678 ~ 1771673 (+)
ulk1a NA coding upstream 339205 1721805 ~ 1735615 (+)
adgrd1 adgrd1 coding upstream 353927 1680081 ~ 1720893 (+)
kctd9a kctd9 coding downstream 50304 2140097 ~ 2156589 (+)
LOC120560792 gnrh1 coding downstream 67819 2157612 ~ 2160627 (+)
klhl22 klhl22 coding downstream 103119 2192912 ~ 2203066 (+)
LOC120560154 nefl,LOC102797482,LOC104959585 coding downstream 173116 2262909 ~ 2266743 (+)
LOC120561412 lrrtm4,LOC104959581,LOC103353625,LOC101488074,LOC100703069,LOC102799547 coding downstream 275957 2365750 ~ 2434942 (+)
G58390 lgi3 non-coding upstream 3337 2067585 ~ 2071483 (+)
G58384 NA non-coding upstream 11818 2062620 ~ 2063002 (+)
G58383 NA non-coding upstream 12251 2062074 ~ 2062569 (+)
G58372 NA non-coding upstream 123548 1933007 ~ 1951272 (+)
G58347 NA non-coding upstream 346487 1701907 ~ 1728333 (+)
G58478 NA non-coding downstream 42155 2131948 ~ 2132274 (+)
G58574 NA non-coding downstream 346591 2436384 ~ 2437472 (+)
G58597 NA non-coding downstream 433646 2523439 ~ 2523638 (+)
G58598 NA non-coding downstream 433848 2523641 ~ 2523934 (+)
G58599 NA non-coding downstream 434414 2524207 ~ 2524567 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 1236959 789405 ~ 837861 (+)
LOC120560799 NA other upstream 1862437 210742 ~ 212383 (+)
dock5 dock5 other downstream 183885 2273678 ~ 2312665 (+)
lman2lb NA other downstream 788581 2878374 ~ 2883861 (+)
LOC120560521 tjp2 other downstream 1345372 3435165 ~ 3522756 (+)
G59086 NA other downstream 2027486 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 2334348 4424141 ~ 4429981 (+)

Expression


Co-expression Network