G58390 (lgi3)


Basic Information

Item Value
gene id G58390
gene name lgi3
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2067585 ~ 2071483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU78516
GGGCCTTAAATTGGATTTAATCATACCCACTTGCCACCCACCCTTCCATGTGCAAATGGACACAGCAACAATGAAATACAGTTTGTGACTATAcgtacacaaaaacataggaaattATTAGAATGTTTTATAACTTAAATATGCATTCTCTGATCTTGTTATTGCTCCCCAACACCCCTCAAATTGGTTATTAGTTATAATCACCAAGATTGCTATAGTGCCCCCAatctttcaatttcaatttcgctCATTACCCTCGTCCCCAAAACATCCCACTGTTGGGGGATTTGGGAAGTATAACAAAGTTTAAGGAtcatatttaaaattttaattcGGAAGAGCAATAGGTTGACATTTTCAGTTAATTTTGGGGCCCCTCACTTAGTTTGCTCATGCCTCTCTGATCCCATGTCAGTTATTGCAGAATGAACATTAAATCCAAAACAAATTCAAAAGGTATCTCATATATAAAGATaaacataatcaaggatttcaAAGTAGGCTATTTAAATGGTGAGTATTGCTTGTTTTACATAGTTATATCATTTCTTACCGTGTCATGCAAAATGCTACACAAATAGACTACACTGTGAAACTTACGAAACCTTCATAGTTTTACAGTCAGTTACAATATCCAGTCTCATCCAGTGAATAATTCAGTCGATGCACATGCACATAATTTTCACATTATTAAAGTGCAGTATACAATATAGTACTTTTGAAAAAGAATTGGCCTAAACATATGGTTGGCAGAACAGAAGCAGTATGCGGCAATGACATGACACTTATGTTGGCATGTTACCGATGCTGTGTATTATCACATTATTTCATTCAGATGTTAAGGGACAGTGAATAAAAATAGATGAATCATTTAATTAGTTGCCTCGCTTAAAACATCAGGTGAAACAGCAGACCTTTAGTTAcATGGCTTAAACATTTTGCAgtctttcatttatttggcacaTGTTGATGAATGCTTAGACCAGCCTCCTTTTCGCTCTATTAGCATGTCTACTTAGCACTGAGATCCACCACCAGGTGCTGGTAGGCCAGGGTGTTGCCTTTGAAGCTGGCAGCCAGCAACATGTCCTTGTTGTCGACAGATACCAAGCTGAACGCTCGCGGGGCCCTCATGTTAAGCTCCTGGAAGGGCTGAAAGCGCTGAGTGAGGTCATCCCACAGGTATACTCTGGAGAAGGAGAAATCACTTCCGAGAATGAGGTACTGACGGAGGCCCACTGTGAAAGGATACACTGCCATGGAGCCCCGCGACGGAAGAGTCTGGATCTCCACGAAACGCTGCCCTTCCCAGCGGAGGATCTTGGAGTCACCTATGAAGCGCGTGAGGCAAAGGTAAAGAACCTTCCTCACCCAGAAGTGCTTAACCATCTCCACATCCGCTAGCTCAGTGATTTGAGAGAAGAACGCAAACTGCTTCTGGCCTCGGTTCCACTGGTAAACCACGGGTGGCTGAGAGGCGCTGGAGAGGATGAGGTGAGGCTTTCCCCCAACATCAACGAACTCCACATGGGTGTCCCGGTGCCAGGGATGGAGGGACTGGTGGGTGTAGAAACCATTGCTGTTCCAGCGATAAATGCTGGTGGAACCTGCCTTTGAGCTGTCTGCTACTACGAAGTACCACTCTTCATCCAGCTGGAAGGTGTCCACGAAGTTGGGCTTTCTCACGCGAGTGGTGTCAATGTCTTGGATCTTTACAAAGCGCTGCGGGTCCTCTTCCC

Function

symbol description
lgi3 Predicted to be involved in regulation of exocytosis. Predicted to be located in extracellular region. Predicted to be active in synaptic vesicle. Is expressed in head; hindbrain; and spinal cord. Orthologous to human LGI3 (leucine rich repeat LGI family member 3).

NR:

description
PREDICTED: leucine-rich repeat LGI family member 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78516 True 1739 lncRNA 0.44 2 2067585 2071483

Neighbor

gene id symbol gene type direction distance location
ccdc92 ccdc92 coding upstream 13104 2037572 ~ 2054481 (+)
ncor2 ncor2 coding upstream 118870 1804636 ~ 1948715 (+)
ep400 ep400 coding upstream 295912 1736678 ~ 1771673 (+)
ulk1a NA coding upstream 331970 1721805 ~ 1735615 (+)
adgrd1 adgrd1 coding upstream 346692 1680081 ~ 1720893 (+)
kctd9a kctd9 coding downstream 68614 2140097 ~ 2156589 (+)
LOC120560792 gnrh1 coding downstream 86129 2157612 ~ 2160627 (+)
klhl22 klhl22 coding downstream 121429 2192912 ~ 2203066 (+)
LOC120560154 nefl,LOC102797482,LOC104959585 coding downstream 191426 2262909 ~ 2266743 (+)
LOC120561412 lrrtm4,LOC104959581,LOC103353625,LOC101488074,LOC100703069,LOC102799547 coding downstream 294267 2365750 ~ 2434942 (+)
G58384 NA non-coding upstream 4583 2062620 ~ 2063002 (+)
G58383 NA non-coding upstream 5016 2062074 ~ 2062569 (+)
G58372 NA non-coding upstream 116313 1933007 ~ 1951272 (+)
G58347 NA non-coding upstream 339252 1701907 ~ 1728333 (+)
G58286 NA non-coding upstream 505065 1476674 ~ 1562520 (+)
G58382 NA non-coding downstream 3337 2074820 ~ 2089793 (+)
G58478 NA non-coding downstream 60465 2131948 ~ 2132274 (+)
G58574 NA non-coding downstream 364901 2436384 ~ 2437472 (+)
G58597 NA non-coding downstream 451956 2523439 ~ 2523638 (+)
G58598 NA non-coding downstream 452158 2523641 ~ 2523934 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 1229724 789405 ~ 837861 (+)
LOC120560799 NA other upstream 1855202 210742 ~ 212383 (+)
dock5 dock5 other downstream 202195 2273678 ~ 2312665 (+)
lman2lb NA other downstream 806891 2878374 ~ 2883861 (+)
LOC120560521 tjp2 other downstream 1363682 3435165 ~ 3522756 (+)
G59086 NA other downstream 2045796 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 2352658 4424141 ~ 4429981 (+)

Expression


Co-expression Network