lman2lb


Basic Information

Item Value
gene id lman2lb
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2878374 ~ 2883861 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU78941
AGATGGCTGACACTGTCACCAAGTCAGATCCGCTGGGAAGTTTCTGGCTTTTATGTCcaatgtttcattttaaaaacctCCGGAAAttaacatgtttgtttgttagcGTTTGTATTTTAATAAGTCCGTCGCTGGCAGACGAACAGGACTTTATGGAAGACTTTATGAAGCGGGAATATTCTCTGGCAAAGCCGTACCATGGCTTGGGGTTCTCCAGCTCCTCCCAGTGGGATCTGATGGGCACTGCCATGGTTACCCCGGAGCACGTGAGGCTGACCCCTGACAtgcagagcagacagggagcCGTTTGGAGTCGAGTTCCTTTGTTGGTGCGGGATTGGGAGCTTAGGGTGCACTTTAAAATCCACGGCGTGGGAAAGAAGAACTTCAATGGGGATGGCATGGCTATCTGGCTAACCAAAGACCGCATGCAGAATGGTAGGAAGGCACTGGATCACTCTACAGGGGGCATGTCCCGTTCAATGAAAAGGAAC
>XM_039804452.1
TCACGCCTCACGTCACATGTTGTGTAAAGATGGCTGACACTGTCACCAAGTCAGATCCGCTGGGAAGTTTCTGGCTTTTATGTCcaatgtttcattttaaaaacctCCGGAAAttaacatgtttgtttgttagcGTTTGTATTTTAATAAGTCCGTCGCTGGCAGACGAACAGGACTTTATGGAAGACTTTATGAAGCGGGAATATTCTCTGGCAAAGCCGTACCATGGCTTGGGGTTCTCCAGCTCCTCCCAGTGGGATCTGATGGGCACTGCCATGGTTACCCCGGAGCACGTGAGGCTGACCCCTGACAtgcagagcagacagggagcCGTTTGGAGTCGAGTTCCTTTGTTGGTGCGGGATTGGGAGCTTAGGGTGCACTTTAAAATCCACGGCGTGGGAAAGAAGAACTTCAATGGGGATGGCATGGCTATCTGGCTAACCAAAGACCGCATGCAGAATGGTAGGAAGGCACTGGATCACTCTACAGGGGGCATGTCCCtaggtATCCACTGTGACTGTCACTTTGTCACACCCAATGCTGACAAGAGCCATGATAGGGCTTTCCCATACGTCTCAGTGATGCTGGGGAACGGGACTCTGTCATATGACCACGATTCTGATGGACGGCCCACTGAGCTCGGAGGATGTACAGCTATGGCGCGCAACGCAGTCCACGACACCTTTCTCCTCGTCAGATACTCCAAACAGCGCCTGACGCTGCTGGTAGACGTTGACGGTAAGCAGGAATGGAAAGACTGTGCTGACATCACAGGCCTGTGGCTGCCTGCCGGCTACTTCCTGGGTGCGTCCTCGGCCACCGGAGACCTGTCAGATAACCATGACATCATCTCCATCAAGCTGTACCAGCTGACAGTAGAGAGGACGCCTGAGGACggggaccaggaccaggacgAGGTCACTGTCCCCAGAGTGGACAACATGGAGCAGTTCCATGTGGAGGTCCAGGAGGAAGGGATGAGCGGAGTGCAGTTCTTCTTCACCCTGGTCTTCTCCATCCTGGGCCTGGCTGTGCTGGCCGTGGTAGGCCTGGTCCTTTACGGCCGCTGGAAGGAAAACAGACGCAAACGCTTCTATTGATCAGAAAAACCTTCAGAATGTATGTTTCCTAATCAACGTATACCACTCAGTGCAAAGACTGCCACAGCTTACTGAAGCATACAGAGAAGTGACCAACCGGATGGGTCTGGAGCCCAGAGCCAAGAGAACACAAAGAGCCAGCGGCCACATATTCTTTTTTGTCTGCGTTATGGAAGATTAATGAGATAAAGCTGCTTTAGTGGAAAGCCTTCTGTTGAAACTGGATCATGTGAATGGCACTGCAACACGTGCACTAACTGAGACACTGTAGATTTAACATATGAGTTTCACCAGCAGGAAGACAAACCTCAAAATCCCAGATGCTGTGTGTAGTTTACTGACATCATGTTTAAATTTTAATTACCTCTGACTGCCACTTGGTGCTGCCACAGTGCAGCCTTAATTTGCTGTGGCGACCGATCAAGCTGTGGATCATCAGAGACTTGTTCTTGCTGCACTGAAAAGTCCAAATGTTTGAGCTGCCATGTATTTGAGATAAAATAAGCCCGAAAAAAGAAGATGTAAATGTATGATTAATGAAAACATCATGCTCTATGCTGTACGTCAAAGAAAGAATGGGTGTCGAGCTAGGACCAATAAAGACGGGCCCTGACTCCATGTTCCA

Function

NR:

description
VIP36-like protein isoform X2

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU78941 False 494 TUCP 0.50 3 2878401 2879744
XM_039804452.1 True 1728 mRNA 0.50 9 2878374 2883861

Neighbor

gene id symbol gene type direction distance location
mlec mlec coding upstream 215924 2656511 ~ 2662450 (+)
cabp1a cabp1,LOC100709699,LOC102206763,LOC102781601,LOC104946293 coding upstream 223777 2640152 ~ 2654597 (+)
asphd2 asphd2 coding upstream 243691 2630504 ~ 2634683 (+)
lrrc75ba lrrc75b,LOC104956515,LOC102775864 coding upstream 261401 2600890 ~ 2616973 (+)
anapc5 anapc5,LOC102800026 coding upstream 301324 2560749 ~ 2577050 (+)
LOC120561358 LOC104949113 coding downstream 900 2884761 ~ 2889848 (+)
LOC120561351 NA coding downstream 13679 2897540 ~ 2913826 (+)
nsmfb nsmf,LOC101467740,LOC102197052,LOC102311847 coding downstream 54168 2938029 ~ 2993038 (+)
rabl6b rabl6 coding downstream 330728 3214589 ~ 3234118 (+)
imp4 imp4 coding downstream 356268 3240129 ~ 3245982 (+)
G58745 NA non-coding upstream 29524 2848391 ~ 2848850 (+)
LOC120561364 NA non-coding upstream 48843 2821879 ~ 2829531 (+)
G58726 NA non-coding upstream 63843 2813924 ~ 2814531 (+)
G58723 NA non-coding upstream 67097 2810866 ~ 2811277 (+)
LOC120561363 NA non-coding upstream 73718 2803541 ~ 2804656 (+)
G58761 NA non-coding downstream 8515 2892376 ~ 2892715 (+)
G58778 NA non-coding downstream 158278 3042139 ~ 3042443 (+)
G58780 NA non-coding downstream 164894 3048755 ~ 3049029 (+)
G58793 NA non-coding downstream 189802 3073663 ~ 3074232 (+)
G58817 NA non-coding downstream 272201 3156062 ~ 3156295 (+)
dock5 dock5 other upstream 565709 2273678 ~ 2312665 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 2040513 789405 ~ 837861 (+)
LOC120560799 NA other upstream 2665991 210742 ~ 212383 (+)
LOC120560521 tjp2 other downstream 551304 3435165 ~ 3522756 (+)
G59086 NA other downstream 1233418 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 1540280 4424141 ~ 4429981 (+)
trnal-aag_1 NA other downstream 1548310 4432171 ~ 4432253 (+)
trnaq-uug_2 NA other downstream 1548807 4432668 ~ 4432739 (+)

Expression


Co-expression Network