tnc (tnc,LOC104930867,LOC103356464)


Basic Information

Item Value
gene id tnc
gene name tnc,LOC104930867,LOC103356464
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3049669 ~ 3134549 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU79039
GCTGTCCGTCCAGCTTATATAGAATGTCCTCTGTCACTCAGGTCTTTCCAACCTGCATAAGATCACAGCTGGAGGTCAGTACGAGCTGCGAGTGGACCTGAGAGATAAGGGAGAAACAGCCTACGCCCAGTATGACAAGTTCTCCATCTCTGAACCCCGGACCCGCTACAAAGTCCACGTAGGAGGATACAGTGGAACAGCAGGTGACTCTATGACATACCATCGGGCGTCCATTCTCCACTTACGACCACGACAACGACATCGCTGTCACCAACTGTGCCCTGTCCTATAAGGGAGCGTTCTGGTATAAGAACTGCCACCGCGTCAACCTCATGGGACGATATGGAGACAACAGTCACAGCAAGGGTGTCAACTGGTTCCACTGGAAAGGCCACGAGCACTCCATCGAGTTTGCTGAGATGAAGATCAGGCCATCCAACTTCAGGAACCTGGAAGGAAGAAGGAAACGATCATAAACCccctcaccaccaccaccaccaccaacactGCTACGACTCTGTCTGGACTCCCCATTGACCACCTGGActcccacacccacacaccctgCAGCAACCAAAGCCACTGCCGAGATCCCTGCTGCCTCCACCTCCCCTCCCCTCATTTGCTCATGATCAGCATGGACTCCATGAgatgacacccccccccccctccgatGACACGGTTGTGGAAATGCTGCCAGTGCGGAAATCAATGTGCATGTTACAAACTGGACTTAAATCAAGCCCACACAGATTCTACTCACGCACCAAAGATAGCAAAAACAACTCCATGTCCCCTGATTCTGATCCATCCTCCGGTGTTGCAGCATTTGTGGGGGGGCTTTGGCATTATGTTGTGTACAGTAATTAATACAGTTCCTATTTCACGTTTGGGGTATCACAGAAAGGACAGGCTGTTTATGCAGTAGTACAATGTGGTCTTGTTTAGGTTCAGGGCCTCTTTGCTAAAACCGATAATACAGTGATTCAGCAATTCAACTGGATCATCTTACAGTCTATTCCTTGTACAGTACTGTACACGTATTCATCTAAATGAAAGATTTGGAAAGGGATATTCCTCAGATGGCATTGCTCAGATGTCAGATATCTCCGTCTAACTTgccatttgtttgtgtttgtgtttgtgcttaACTTGTCTCAGTGTCACTTTATCCTCCCCAGGTTCCCTCATCTCACGCAACATCTCATGTGATAGAGATggaaatgaaaagagaaaaaaaatatatggaaAAGTATTTTACCCCGCCACATCCCATGTCCACATGGATGGCAATGTTTCCATTCATTACGTCAGCCCCTGAAGGCATCATgcacaaagaacagagaaaagaaaagctggtgtgtttccatgtgtttgGTTTCTGCTGTGAATCCGAGGCAGGACCTGTTCCTCAGTATATAATGATATGCGGTgatgatattttctttctttttgcaaAATGTGAAAACAGTTCATATGTGTGGAACAGGACAAGGCTCAGTATTGTTGTCAAAAAATGTTGAGTTTCTGTTGGACATAGTAAGGTTTCGATGCTTATGTTGATGCCGATAGTGTTTGAACAGGCCAAGACTAGAGAAGTAGTTGCTGCCCCCCCAGCCCTGCCACAGCAGCACACTAACCACTGACCCTGTGCAGAATGCCTGT
>XM_039804414.1
AGGAGGCTGAGCCAGAGCAGGTGTCTCTGCTGACATCTGCTTCAGTTCACTGGGGAAACACAAGCACCCTGCAGCTACAGCACTCACAATGCCACTGAATCGCCCCGGCTCCATTTAAACAAGGACAAGAACACGTGATACCTGAACAGACTCTAGTCTGCACTCCGCTGCTACTTTCTGAGAAGCCGCAGTTTCACGGTGTCATCATGGGAATGAAAGGCTTCCTCTTACGCTGCCTGACCGTGGCCCTGCTCCTCCAGCTCTCCACCGCCGGCCTGGTCAAGAAGGTCATCCGCCACCGTAGAGAGGCCCTGATGCCCAAGAAAACCCAGGAGAATGTGACCGTGCCCCACCCCGACCAGCCGGTGGTGTTCAACCACGTCTACAACATCAATGTCCCCTCTACGTCTCTCTGCTCTGTGGACCTGGACTCGCCCGGTGACACTGAACTCAAACACAAGAGTGTCCCGATGGACATGCAGAACAGCGAGCACATGGAGCACACAGTGGACGGTGACAATCAGATCGTTTTCACCCATCGCATCAATATCCCCAAGCAGGCATGCGGCTGTGACAACCAGGTGCCCGATATAAAGGACATCCTGAACCGGCTGGAGATGCTGGAGTCCGAGCtgtctagtctgagagagcagTGCAGCAGTGGGGCAGGCTGCTGTGGAGCTCAGGTTACCGCAGGTGAAGTGTCCACAAAGCCCTACTGTAATGGGCATGGGAATTGGAGCACTGACACCTGCAGCTGCATATGTGAGCCTGGATGGAAGGGTCCCAACTGCACCGAACCTGAGTGCCCCAACGACTGCCAGGACCAGGGCCGCTGTGTGGATGGCAAATGTGAGTGCTTTGAGGGCTTTGGTGGGGACGACTGCGGTATAGAGCTCTGCCTGCTGGACTGCGGTGACTATGGCCACTGTGTAGATGGGTCCTGCCTCTGTGAAGAGGGCTTCATTGGTCAGGACTGCACCCAGACCAACTGCCTCAACAACTGCCTGGGCCGTGGACGCTGCGAAGATGATGAGTGCGTTTGCGACGAGCCGTGGACGGGCTTCGACTGCTCCGAACTCATCTGTCCAAACGACTGCTATGACCGTGGACGCTGCATCAATGGCACCTGCTACTGTGAACAGGGATACACTGGAGAAGACTGCAGTGAGCTCACTTGTCCTGGCAACTGTAACAACCGTGGCATGTGTGTGAATGGCCAGTGTGTGTGCCAGACCGGCTACATTGGAGAGGATTGCTCGAAGCTCACCTGTCCCCAGAACTGCAACGAGAGAGGCCATTGCTTTAATGGGAAGTGCATCTGTGATCCAGGATTTGAGGGTGAAGATTGCTCTATCCTCTCATGCCCTGAGAACTGTAGCAACAGGGGCCAGTGCATTAACGGAGAATGTGTATGTGACATAGGATACCAGGGCGAAGACTGTAGCGAGCTCTCCTGCCTTAACAATTGCCAGGACCGTGGCCGCTGCGTTAACGGACAGTGCGTGTGTAACAAAGGTTATGCTGGGGAGGACTGCAGCATCAAGACCTGTCCAAAAGACTGCATGGGACGAGGAGATTGCGTGGATGGCAAGTGCGTGTGCTTTGTCGGCTTCACTGGGAAAGACTGCGGCCAGCTGACCTGCCCTAATGACTGCCTGGACCGTGGTCACTGTGTGAACGGACAATGTGTTTGTCACAAGGGTTTCACTGGTGAGGACTGCAGTGAGAAGACGTGTCCCAAGAACTGTCTTGATAGAGGTTACTGCGTCGATGGCAACTGCATGTGTTATGAAGGTTTCACCGGGCCCGACTGCTCAATGCTGACCTGCCCAGAAGACTGCCAAAACCAGGGGCACTGTGAGAACGGAGTGTGTGTTTGCGACGAGGGCTTCATTGGGGAGGACTGCTCTGGGGTCTCACCTCCCAAGGACCTGACAGTGGTGGAGGTCACCCCAGAGACGGTGGACGTGTCCTGGGAGAATGAGATGCGTGTGACCGAGTACCTGATCACCTACGTGCCAACGGCCCCTGGAGGTCTGGAGATGGACATGCGGGTGCCTGGGGACCAGAAGACGACTACTATTCGGGAGCTTGAGCCTGGCGTGGAGTACCTGATCAGCGTCTTTGCTGTGCTCAACAACAAGAGGAGTCTTCCTGTCAGTGCCAGGGTGGCTACACATCTGCCAGAGCCTGAGGGACTTAAGTTCAAGTCCGTGCGGGAGACGTCAGTGGAGGTGCAGTGGGACCCGTTGGACATTTCTTTCGATGGCTGGAACCTCATCTTCAGAAACACAAAAGAGGAAGATGGTGAGATTCTCAACTCCCTCGGCCGTCCAGAGACCACCTTTGAGCAGTCGGGCCTGGGCCCCGGCCAGGAGTACGAGGTCAAGCTGGAGGTGGTGAAGAACAACAAGCGTGGACCGCCTGCCTCCCAGAACGTCGTTACAATGATTGATGCCCCCAGCCAGGTGGACGTGCGTGACGTGACAGACACCACAGCGCTGGTGACCTGGTTCCAACCCGTGGCGGAGGTGGACGGGGTCAGCGTCTCCTACGGGCCCAGCTCCAACCCCGCTGATCGCAAGCTGGTGGAGCTGTCCTCCACTGACACCCAGTACCACCTGGGGGGCCTCACCCCCGACACCCAGTACGAGGTGTCGCTGTCGGCTCGGAGGGGAGAACGGACCAGCGCTCCCGTCTACGAGTCTTTCCTCACAGACCTGGACGCCCCCAGAGACCTGCAGACAGTGGAGCTGACTGACGAGAGCATCACTCTGGAGTGGAAGAACAGCCAGGCTCCGGTGGACAACTACCGCATCAAGTATGGACCTCTGTCAGGGGGGGAGCACGGAGAGCTGCTCTTCCCCCCGGGACCCAAGGACACTACCCGGGCCAAGATCACCGGCCTGAGACCGGGCACCGAGTATGGGATGGGTGTGACGGCAGTGACAGATGAGCGGGAGAGTCTGCCGACGACCACCAACGCAGTGACTGCCCTGGATGCTCCCAAAGACCTGCGTGTTGCAGAAGTGACGGAGACCACCATTATGCTGGAGTGGAAACGCCCGCTGGCCAAACTGGACTCCTTCAGACTGGTTTACGTGTCTGCTGACGGCCACCGAGCTGAGGAGGTGGTCCCAGGCAGCTCGGAGTCCCACACTCTTAGGGGCCTCACACCTGGCATGCTATACACCATCAGCATCATTGCCGAGAGGGGCCGCAGGACCAGTGCACCCAGCACCATCTCAGCACCAACAGAGGAGGAGAAGCCTGTGGTGACCAACGTCACCGTCAGCGACGTATCGTGGGACAGCTTCCTCCTGTCCTGGTCTGCTGAGGACGGGGCATTGGAGGCCTTTCTGATCGAGGTTACCGATGCAGAGACGGGCGCTGAGTGGCAAAACCACACGGTGCCCGCCGATGCTCGCAGCCTGGCCATCTCTGGCCTCTCCTCCACCACCTGGTACAGGGCCAGTCTGTACGGGGTGTTCAGGGGGGCCCTCTTAGACCCGGTCTTTGCAGACACCATCACAGAGGCCGAACCGGAGATGGAGGCTCTCCTCGTCTCTGACCTCACCCCTGAGAGCTTTAGCCTGGCCTGGACGGCTGAAGAGGAAGCCTTCGACACCTTTGTCATAATGGTCAGCCAGGCCGATGGCCCAGGCCAACCAAGAGAGCTGGTTCTGGGTGGCGAGGAGCGGAGCACAGCTATCACAGATCTCACCGAGGACACCGAGTACAAAATCGAAATCTTTGGGCTCATTTTGGGAAGAAGCTCCaagtctgtaatggagtgggtGAGAACAGATGTGGGTCCACCCAAGGGTTTCCGCTTCTCTGATGTCACCGACACGTCGGCCACCGTTCACTGGGTGGTTCCCAGAGCTCGGGTGGACAGCTACAGGGTCACCTATGTGCCTGCTCATGGAGGTAATGCTAAGACTCTGACAGTGGACGGCTCGGAGTCTCAGACTGTGCTGCCCAACCTGACCCCCGGGGTCACCTATGAGGTTACCGTGGTCGCTGTCAAGGGTCAACGGGAGAGTGAGCCTGGATCAGACAGTGTCACCACCGctcTGGATAAACCCCGTGGTCTGACTGCAGTCAATATCACAGACACTGAGGCTCTGCTGCTCTGGCAGCCCGCCATCGCCACTGTAGACGGCTACGTCATCACTTACAGTGCAGACTCAGTGGCTCCAGTGATGGAGCGCGTGTCAGGAAACGTAGTGGAGTTTGAGATGAGCTCTCTGACGCCTGCCACGCACTACACTGTGAAGGTCTATGCTGTGAGGGACCTGGCCAAGAGTGCAGCCACCACCACTGAGTTCACCACTGacGTGGACGCTCCCCAGGACCTGGCAGCCAGTAACATTCAGACAGAGAACGGTATGCTGACATGGAAGCCACCTCGCGCTGACATCACTGGATACATCCTCAGCTTTGAGTCGGCAGACGGCGTTGTCCGTGAGGTGGTCCTGAGTCCCAACGCTGTCTCCTATAACATGGCTCAGCTGAGCGCCTCCACAGAGTATTCAGTCAAGCTGCAGGCCATCGCTGGTCCCAAGAGAAGCCGAGTCATCACTACTGTCTTCACCACCACTGGTGTACTGTACAGACACCCCAAGGACTGCTCCCAGGCCCTTCTGAATGGAGACACCTCATCAGACCTGTACACCATCTATCTGGGTGGGGATGAGAGCCAGCCCCTCCAGGTCTACTGCGACATGAGCACTGATGGAGGTGGATGGATCgTGTTCCTTCGACGACAGAGTGGTAAACTGGAGTTTTTCCGCAACTGGAAGAATTACACAGCTGGCTTTGGTGACATGAACGATGAATTCTGGCTGGGTCTTTCCAACCTGCATAAGATCACAGCTGGAGGTCAGTACGAGCTGCGAGTGGACCTGAGAGATAAGGGAGAAACAGCCTACGCCCAGTATGACAAGTTCTCCATCTCTGAACCCCGGACCCGCTACAAAGTCCACGTAGGAGGATACAGTGGAACAGCAGGTGACTCTATGACATACCACGGGCGTCCATTCTCCACTTACGACCACGACAACGACATCGCTGTCACCAACTGTGCCCTGTCCTATAAGGGAGCGTTCTGGTATAAGAACTGCCACCGCGTCAACCTCATGGGACGATATGGAGACAACAGTCACAGCAAGGGTGTCAACTGGTTCCACTGGAAAGGCCACGAGCACTCCATCGAGTTTGCTGAGATGAAGATCAGGCCATCCAACTTCAGGAACCTGGAAGGAAGAAGGAAACGATCATAAACCccctc

Function

symbol description
tnc Acts upstream of or within several processes, including generation of neurons; neural crest cell migration; and positive regulation of cellular component organization. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Is expressed in several structures, including adaxial cell; central nervous system; hypochord; myoseptum; and neural crest cell. Human ortholog(s) of this gene implicated in allergic conjunctivitis; asthma; autosomal dominant nonsyndromic deafness 56; and pulmonary hypertension. Orthologous to human TNC (tenascin C).

NR:

description
PREDICTED: tenascin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79039 False 1665 lncRNA 0.47 3 3049669 3053451
XM_039804414.1 True 5296 mRNA 0.57 24 3050850 3134549

Neighbor

gene id symbol gene type direction distance location
b3galt8 NA coding downstream 1867 3045676 ~ 3047802 (-)
zgc:162952 LOC103356462,LOC104930869,LOC101468259,LOC102311328,LOC100693656 coding downstream 7413 3015609 ~ 3042256 (-)
LOC120561357 NA coding downstream 193966 2853308 ~ 2855703 (-)
hps4 hps4,LOC102793116 coding downstream 365966 2670234 ~ 2683703 (-)
si:ch211-170d8.2 NA coding downstream 378574 2667262 ~ 2671095 (-)
traf2a traf1,LOC106956159,LOC103356465,LOC106930528,LOC103141905,LOC108249884,LOC102784265 coding upstream 61937 3196486 ~ 3211999 (-)
LOC120561362 NA coding upstream 137902 3272451 ~ 3293307 (-)
LOC120561352 gcnt4 coding upstream 176518 3311067 ~ 3315203 (-)
LOC120561346 NA coding upstream 181267 3315816 ~ 3354947 (-)
apba1a apba1 coding upstream 420524 3555073 ~ 3603158 (-)
G58807 NA non-coding downstream 36288 3011390 ~ 3013381 (-)
G58806 NA non-coding downstream 50254 2999199 ~ 2999415 (-)
G58748 NA non-coding downstream 176040 2873355 ~ 2873629 (-)
G58725 NA non-coding downstream 235974 2813371 ~ 2813695 (-)
G58716 NA non-coding downstream 247698 2801742 ~ 2801971 (-)
G58818 NA non-coding upstream 27336 3161885 ~ 3162127 (-)
G58852 NA non-coding upstream 111532 3246081 ~ 3246397 (-)
G58922 NA non-coding upstream 300663 3435212 ~ 3467122 (-)
G58931 NA non-coding upstream 353414 3487963 ~ 3488550 (-)
G58932 NA non-coding upstream 355256 3489805 ~ 3490230 (-)
LOC120561349 donson,LOC102310661 other downstream 203062 2834188 ~ 2846607 (-)
LOC120561394 LOC107097799,LOC103353613,LOC101077666 other downstream 357126 2690610 ~ 2692543 (-)
si:ch211-107p11.3 LOC103353652,LOC102075650,LOC108234931,LOC104950460 other downstream 360582 2685891 ~ 2689087 (-)
ggt1a ggt1,LOC102775580,LOC108234964 other downstream 456923 2577875 ~ 2592746 (-)
LOC120560995 NA other downstream 498303 2550046 ~ 2551366 (-)
si:ch211-102c2.4 NA other upstream 98057 3232606 ~ 3240063 (-)
G58919 NA other upstream 262620 3397169 ~ 3397496 (-)
G58920 LOC106099046,LOC107687292,LOC107712180,LOC107663003 other upstream 281078 3415627 ~ 3416854 (-)
G58994 NA other upstream 554080 3688629 ~ 3689338 (-)
golph3a golph3,LOC103397487,LOC108249570 other upstream 1075199 4209748 ~ 4224568 (-)

Expression


Co-expression Network