LOC120561443


Basic Information

Item Value
gene id LOC120561443
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3790420 ~ 3792518 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU79286
TCTGTGTGAGGACTACCTGAGTGTTACTGAGAGCTCCAATTTCTAAATAAAAGTGAACAGGGTTTGTCGGTACGCCATGGCGTCACTGTTGGGTGTGGTCACAGATGCAACGGAGAAGACTTCTGAACACAACCAGCGTCAACAAGTGTGTGTAACACACTTTCAACCAGAGGAGCCACTACAGTGAACCCCAGAGAGACTGTGGACAGGCGGAGACACAGAGCAGGGATGAAGAGGACGGTTTGTCCCCTCTaatatgtttccatccactcgTCAATCAAATGATCTGAAGTTCCCTAAAAACATTCATGTGAGTAAAGccggtg
>XR_005639596.1
GCAATCTGTGTGAGGACTACCTGAGTGTTACTGAGAGCTCCAATTTCTAAATAAAAGTGAACAGGGTTTGTCGGTACGCCATGGCGTCACTGTTGGGTGTGGTCACAGATGCAACGGAGAAGACTTCTGAACACAACCAGCGTCAACAAGTGTGTGTAACACACTTTCAACCAGAGGAGCCACTACAGTGAACCCCAGAGAGACTGTGGACAGGCGGAGACACAGAGCAGGGATGAAGAGGACGGTTTGTCCCCTCTaatatgtttccatccactcgTCAATCAAATGATCTGAAGTTCCCTAAAAACATTCATGTGAGTAAAGccggtgaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79286 False 326 lncRNA 0.48 3 3790424 3792514
XR_005639596.1 True 334 lncRNA 0.48 3 3790420 3792518

Neighbor

gene id symbol gene type direction distance location
ptar1 ptar1 coding downstream 168940 3606395 ~ 3621480 (-)
apba1a apba1 coding downstream 187262 3555073 ~ 3603158 (-)
LOC120561346 NA coding downstream 435473 3315816 ~ 3354947 (-)
LOC120561352 gcnt4 coding downstream 475217 3311067 ~ 3315203 (-)
LOC120561362 NA coding downstream 497113 3272451 ~ 3293307 (-)
pias2 pias2 coding upstream 6514 3799032 ~ 3816820 (-)
ydjc ydjc coding upstream 37828 3830346 ~ 3844040 (-)
ak6 ak6 coding upstream 52124 3844642 ~ 3848510 (-)
isl1a isl1,LOC103469637,LOC107374027,LOC107661270,LOC103141950,LOC102231175 coding upstream 310499 4103017 ~ 4109223 (-)
LOC120560167 NA coding upstream 668911 4461429 ~ 4471480 (-)
G59000 LOC104943502 non-coding downstream 23985 3766191 ~ 3766435 (-)
G58998 NA non-coding downstream 52635 3737542 ~ 3737785 (-)
G58996 NA non-coding downstream 54546 3735554 ~ 3735874 (-)
G58966 NA non-coding downstream 184111 3606062 ~ 3606309 (-)
G58943 NA non-coding downstream 265835 3524383 ~ 3524585 (-)
G58995 LOC104961333,LOC107396654,LOC101067868,LOC102226353,LOC108248341,LOC107088009 non-coding upstream 25915 3818433 ~ 3827426 (-)
G59029 NA non-coding upstream 69326 3861844 ~ 3866088 (-)
G59039 NA non-coding upstream 103194 3895712 ~ 3896725 (-)
LOC120560115 NA non-coding upstream 193110 3985628 ~ 3992944 (-)
LOC120560054 NA non-coding upstream 307280 4099798 ~ 4102914 (-)
G58994 NA other downstream 101082 3688629 ~ 3689338 (-)
G58920 LOC106099046,LOC107687292,LOC107712180,LOC107663003 other downstream 373566 3415627 ~ 3416854 (-)
G58919 NA other downstream 392924 3397169 ~ 3397496 (-)
si:ch211-102c2.4 NA other downstream 550357 3232606 ~ 3240063 (-)
tnc tnc,LOC104930867,LOC103356464 other downstream 655871 3049669 ~ 3134549 (-)
golph3a golph3,LOC103397487,LOC108249570 other upstream 417230 4209748 ~ 4224568 (-)
sub1b sub1 other upstream 631631 4424149 ~ 4430090 (-)
LOC120560375 NA other upstream 640326 4432844 ~ 4436316 (-)
LOC120561493 NA other upstream 1673705 5466223 ~ 5466437 (-)
LOC120561494 NA other upstream 1797055 5589573 ~ 5591810 (-)

Expression


Co-expression Network