LOC120560054


Basic Information

Item Value
gene id LOC120560054
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4099798 ~ 4102914 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU79367
GCTGTGCGCTACTCtgaatagaaaaaaacattgactggtgattttttttttttttttattcgataCGCACCTCATCACGTAGGCTTGATAGACCGCTGGAGGGGAACAGCACTgcgttttcttcatttttagCTTTCGCCCCGACAGAGGGATGCCCTGTGTAAGGGCTGCCGCTGCTGCTTTCTGGGACTTTAAGAGAAGGATGGGCCAGTGAGGTCATACGAGCATCACTGGGAGAACAACAGAGGACAAGCTGACAGACAGCAAAGCATTTTTCCACAAAGTCAAACAAGAGGACGCAGCGGTCATTtcctgcagtgtgtttagtgttactGCACGCTGCTGGCAACAATGACTCAAACCGAAATTAGGTTTGAATCCATCTTGAGTCTAACTGCAAAAAACATGACTCTAGCGCTTCTATACTTCTGGAATAGTGTCCCATCCTGTTTAAATGTCACGTTGTGATTGTGTCGCCTGCACCTTTCATAAAATAACATGTCCAGTTGGGACTACAACTGAGTTGGAACATTTCCACCGGTGTGCCTGTGTCCAGGGAGCTTTACATGTGTTTCAGAAGAAAATAGAAGGAGAAGACCTTTTCAACACAACACTGTTTAGTGCTGGAGTTGGGCACCACAACATAACATGACTACTATACATCATCATACATTTGAAATTCATTTCtctacagaaacaca
>XR_005639411.1
TGTGCGCTACTCtgaatagaaaaaaacattgactggtgattttttttttttttttattcgataCGCACCTCATCACGTAGGCTTGATAGACCGCTGGAGGGGAACAGCACTgcgttttcttcatttttagCTTTCGCCCCGACAGAGGGATGCCCTGTGTAAGGGCTGCCGCTGCTGCTTTCTGGGACTTTAAGAGAAGGATGGGCCAGTGAGGTCATACGAGCATCACTGGGAGAACAACAGAGGACAAGCTGACAGACAGCAAAGCATTTTTCCACAAAGTCAAACAAGAGGACGCAGCGGTCATTtcctgcagtgtgtttagtgttactGCACGCTGCTGGCAACAATGACTCAAACCGAAATTAGGTTTGAATCCATCTTGAGTCTAACTGCAAAAAACATGACTCTAGCGCTTCTATACTTCTGGAATAGTGTCCCATCCTGTTTAAATGTCACGTTGTGATTGTGTCGCCTGCACCTTTCATAAAATAACATGTCCAGTTGGGACTACAACTGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko04550 Signaling pathways regulating pluripotency of stem cells

RNA

RNA id representative length rna type GC content exon number start site end site
TU79367 True 701 lncRNA 0.44 2 4099798 4102914
XR_005639411.1 False 520 lncRNA 0.45 2 4099977 4102912

Neighbor

gene id symbol gene type direction distance location
ak6 ak6 coding downstream 251288 3844642 ~ 3848510 (-)
ydjc ydjc coding downstream 255758 3830346 ~ 3844040 (-)
pias2 pias2 coding downstream 282978 3799032 ~ 3816820 (-)
ptar1 ptar1 coding downstream 478318 3606395 ~ 3621480 (-)
apba1a apba1 coding downstream 496640 3555073 ~ 3603158 (-)
isl1a isl1,LOC103469637,LOC107374027,LOC107661270,LOC103141950,LOC102231175 coding upstream 103 4103017 ~ 4109223 (-)
LOC120560167 NA coding upstream 358515 4461429 ~ 4471480 (-)
pnpla7b pnpla7 coding upstream 374361 4477275 ~ 4529746 (-)
dph7 dph7 coding upstream 429054 4531968 ~ 4543886 (-)
LOC120559971 NA coding upstream 536190 4639104 ~ 4642738 (-)
LOC120560115 NA non-coding downstream 106854 3985628 ~ 3992944 (-)
G59039 NA non-coding downstream 203073 3895712 ~ 3896725 (-)
G59029 NA non-coding downstream 233710 3861844 ~ 3866088 (-)
G58995 LOC104961333,LOC107396654,LOC101067868,LOC102226353,LOC108248341,LOC107088009 non-coding downstream 272372 3818433 ~ 3827426 (-)
LOC120561443 NA non-coding downstream 307280 3790420 ~ 3792518 (-)
G59098 NA non-coding upstream 80439 4183353 ~ 4183917 (-)
G59101 NA non-coding upstream 84347 4187261 ~ 4187472 (-)
G59197 NA non-coding upstream 310845 4413759 ~ 4413981 (-)
G59207 NA non-coding upstream 351776 4454690 ~ 4461071 (-)
LOC120560046 LOC103358197 non-coding upstream 445811 4548725 ~ 4557613 (-)
G58994 NA other downstream 410460 3688629 ~ 3689338 (-)
G58920 LOC106099046,LOC107687292,LOC107712180,LOC107663003 other downstream 682944 3415627 ~ 3416854 (-)
G58919 NA other downstream 702302 3397169 ~ 3397496 (-)
si:ch211-102c2.4 NA other downstream 859735 3232606 ~ 3240063 (-)
tnc tnc,LOC104930867,LOC103356464 other downstream 965249 3049669 ~ 3134549 (-)
golph3a golph3,LOC103397487,LOC108249570 other upstream 106834 4209748 ~ 4224568 (-)
sub1b sub1 other upstream 321235 4424149 ~ 4430090 (-)
LOC120560375 NA other upstream 329930 4432844 ~ 4436316 (-)
LOC120561493 NA other upstream 1363309 5466223 ~ 5466437 (-)
LOC120561494 NA other upstream 1486659 5589573 ~ 5591810 (-)

Expression


Co-expression Network