sub1b (sub1)


Basic Information

Item Value
gene id sub1b
gene name sub1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4424149 ~ 4430090 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU79517
GACGTTTGAATTTTAGGCAGGCAGCCACTAGCCTACTACTTCCTCGCACCGGAAAATCAGTTAGCTTTCCGCTTCCCGTCAAGAGATCCGCCAAACTCCATCCCATCATCAAAATGCCCAAATCAAAGGAAGTGCTGTCCTCCACATCTGGAAGTGACTCTGACAGTGAAGTAGAGACCAAGgcaaAGAGAAAGAAGTCAAATCCACCAGAGAAACCAGCCAAGAAACCAAAGAGCGGCGAGAGTTCCAAGCCAGGCGGCTCATCCAAGGGCAGCGGCAATGGCGATGACAACATGTTCCAGATTGGAAAGATGAGGTATGTCAGCGTCAGGGACTTCAAAGGCAAAGTCCTGATTGACATCAGAGAGTACTGGATGAACCAAGATGGGGAGATGAAGCCGGGGAAAAAAGGTATCTCCCTGAATCCCGAACAGTGGAACCAACTGAAGGACCAGATTTCAGAAATTGATGATGCCATGAAGAGAATATAAGCATTCCTTTCGATGTGATCTGTTGAACTTATTCCTTTTAAGTTAGTTGGCTGATCAGTTTTGTAAAAATCCTGGATTTGTTTTCTAATGGACTTGTTTAGTTTGTAGTTGTATAGACCTAGAGTCGTCTGCGTACTCTGGTTTTCGGTGTGAAACTTGTTTTTGAGCTGGTTAAGGAAAGGGATGGGTGGATGAGTAGGGGGTGGGTAGAGCGTATCAATACCGTGatgttttttattgaataataaaaatgagGCACTAGCTTAATATTGTTGTTCACTGTGTAAGTCCATTGTCACACTATCTTGAATTTTAGGACTCTGTTTGATCTGACCTTTGTAATACCCAACATCAGTGCTCTTCATTTCAGAAAGCCGATCCAGTCTGTCATGTTGTACCTGCAGGGGGTTAGAGCCATGGTGACCCATGGGTTAGGTTTTGAAATTAAATGATACTATCAAACAAATTGTCAAATGATATTATTGAAAGCATTGTATTAGACTTGCATTACCTGCAACTAAGACTGGGCAATAATTCAATATGATAATTTAACCGTCTTTCAATGGAATCATATTGCGATGAAATCATATATCAAGATATTGTGATATACAATGCGTCTAAATTGATAATAAGCCCATTCTGATTCAGTTTTCTCAGAAAATCTGTTGTGAAACATTTTGGGGGATTATTTGAAgaattgcagatttgttttaacaTGGCATTATtgttgtgcatgcatgtaaacaGTCAGTATAtagctggaaaaaaaagttttctctATAATTTCACTTGAAACTGTTTACCatattgatgattatttgtctaaaatctcattgtaaaaaatattttgtgaaagcaccaattgtcaaccctataatatcatcgatgtatttggtcaaaaatatcatatcatctgattttctccatatcgcccagccctaccacaCTTGTCATAAAGAACAGGAGGCTTGTGTGTCCTTGGTGTGTAAGGCCAAAAGTTCtaggcctatatacagtatggtgtttctcaaactttatCAGACCAAGGACCACTTACCCGATAAAAAAACCAACTCACGGACCACAGAACTGCCAAATTATCCCCCAAAACAATAGACCAGCCAAATAAAATGACACTTCTACAAATAGCTTACTCACTTATTGTCTCTGTTGCCAAGAATGGTGCTGCTGAGGCATCAGGCAAGCAATGTCTGTCAGAAGCCATTGATCCATCTTGTCAGTTGACAATAACAGTAAACTTcatatatccatatatatatcCTTTGAATGTCACGCTGAGGATCATTTGTGACATAAATTGGAGGAGTTGTTGCAAAACGGACGGCATTATTGTTGAAGTTAAACGACACAGCAGAACAGCCAATTTAAATAATTCGTTTGCATTCACACAATATTGAAAACAGCACATCTATGCACCTCACTAGGCTTTGGAGTTGCTGGCAGACAGTTTGAGAAAcagaattttaaataaaaacattattttaccaAATCTACTCATGGACCACCAGGGGTCACTCACTTAATACTCACC
>XM_039802792.1
GGGAACAGCCATCGAGACAACACCGGGACGTTACGTTACTTGCGAAGGAGACGTTTGAATTTTAGGCAGGCAGCCACTAGCCTACTACTTCCTCGCACCGGAAAATCAGTTAGCTTTCCGCTTCCCGTCAAGAGATCCGCCAAACTCCATCCCATCATCAAAATGCCCAAATCAAAGGAAGTGCTGTCCTCCACATCTGGAAGTGACTCTGACAGTGAAGTAGAGACCAAGgcaaAGAGAAAGAAGTCAAATCCACCAGAGAAACCAGCCAAGAAACCAAAGAGCGGCGAGAGTTCCAAGCCAGGCGGCTCATCCAAGGGCAGCGGCAATGGCGATGACAACATGTTCCAGATTGGAAAGATGAGGTATGTCAGCGTCAGGGACTTCAAAGGCAAAGTCCTGATTGACATCAGAGAGTACTGGATGAACCAAGATGGGGAGATGAAGCCGGGGAAAAAAGGTATCTCCCTGAATCCCGAACAGTGGAACCAACTGAAGGACCAGATTTCAGAAATTGATGATGCCATGAAGAGAATATAAGCATTCCTTTCGATGTGATCTGTTGAACTTATTCCTTTTAAGTTAGTTGGCTGATCAGTTTTGTAAAAATCCTGGATTTGTTTTCTAATGGACTTGTTTAGTTTGTAGTTGTATAGACCTAGAGTCGTCTGCGTACTCTGGTTTTCGGTGTGAAACTTGTTTTTGAGCTGGTTAAGGAAAGGGATGGGTGGATGAGTAGGGGGTGGGTAGAGCGTATCAATACCGTGatgttttttattgaataataaaaatgagGCACTAGCTTAATATTGTTGTTCACTGTGTAAGTCCATTGTCACACTATCTTGAATTTTAGGACTCTGTTTGATCTGACCTTTGTAATACCCAACATCAGTGCTCTTCATTTCAGAAAGCCGATCCAGTCTGTCATGTTGTACCTGCAGGGGGTTAGAGCCATGGTGACCCATGGGTTAGGTTTTGAAATTAAATGATACTATCAAACAAATTGTCAAATGATATTATTGAAAGCATTGTATTAGACTTGCATTACCTGCAACTAAGACTGGGCAATAATTCAATATGATAATTTAACCGTCTTTCAATGGAATCATATTGCGATGAAATCATATATCAAGATATTGTGATATACAATGCGTCTAAATTGATAATAAGCCCATTCTGATTCAGTTTTCTCAGAAAATCTGTTGTGAAACATTTTGGGGGATTATTTGAAgaattgcagatttgttttaacaTGGCATTATtgttgtgcatgcatgtaaacaGTCAGTATAtagctggaaaaaaaagttttctctATAATTTCACTTGAAACTGTTTACCatattgatgattatttgtctaaaatctcattgtaaaaaatattttgtgaaagcaccaattgtcaaccctataatatcatcgatgtatttggtcaaaaatatcatatcatctgattttctccatatcgcccagccctaccacaCTTGTCATAAAGAACAGGAGGCTTGTGTGTCCTTGGTGTGTAAGGCCAAAAGTTCtaggcctatatacagtatggtgtttctcaaactttatCAGACCAAGGACCACTTACCCGATAAAAAAACCAACTCACGGACCACAGAACTGCCAAATTATCCCCCAAAACAATAGACCAGCCAAATAAAATGACACTTCTACAAATAGCTTACTCACTTATTGTCTCTGTTGCCAAGAATGGTGCTGCTGAGGCATCAGGCAAGCAATGTCTGTCAGAAGCCATTGATCCATCTTGTCAGTTGACAATAACAGTAAACTTcatatatccatatatatatcCTTTGAATGTCACGCTGAGGATCATTTGTGACATAAATTGGAGGAGTTGTTGCAAAACGGACGGCATTATTGTTGAAGTTAAACGACACAGCAGAACAGCCAATTTAAATAATTCGTTTGCATTCACACAATATTGAAAACAGCACATCTATGCACCTCACTAGGCTTTGGAGTTGCTGGCAGACAGTTTGAGAAAcagaattttaaataaaaacattattttaccaAATCTACTCATGGACCACCAGGGGTCACTCACTTAATACTCACCATAATAAACACTCATAGGCCAGGCCTATGCATAAGTCtgaa
>XM_039802793.1
CTGCATGTTTACTGCTGTTACAGTGCACTGGCGGCTAATTAATgttctgctaacgttagccgccGAGGCTAAACAATCCAAATAGCATCTtacgttagcttgctagctaatGCCCATGCCTGTAGCCATACAAGCACAGTCTTGGCAGTGCAAACGATCGTTCAAACGCGGCCTCAGTGTGTGCATCACCGTGTATGACAAAGTCTTCAAGCCCTTCAGTGAGCAAAATGCCCAAATCAAAGGAAGTGCTGTCCTCCACATCTGGAAGTGACTCTGACAGTGAAGTAGAGACCAAGgcaaAGAGAAAGAAGTCAAATCCACCAGAGAAACCAGCCAAGAAACCAAAGAGCGGCGAGAGTTCCAAGCCAGGCGGCTCATCCAAGGGCAGCGGCAATGGCGATGACAACATGTTCCAGATTGGAAAGATGAGGTATGTCAGCGTCAGGGACTTCAAAGGCAAAGTCCTGATTGACATCAGAGAGTACTGGATGAACCAAGATGGGGAGATGAAGCCGGGGAAAAAAGGTATCTCCCTGAATCCCGAACAGTGGAACCAACTGAAGGACCAGATTTCAGAAATTGATGATGCCATGAAGAGAATATAAGCATTCCTTTCGATGTGATCTGTTGAACTTATTCCTTTTAAGTTAGTTGGCTGATCAGTTTTGTAAAAATCCTGGATTTGTTTTCTAATGGACTTGTTTAGTTTGTAGTTGTATAGACCTAGAGTCGTCTGCGTACTCTGGTTTTCGGTGTGAAACTTGTTTTTGAGCTGGTTAAGGAAAGGGATGGGTGGATGAGTAGGGGGTGGGTAGAGCGTATCAATACCGTGatgttttttattgaataataaaaatgagGCACTAGCTTAATATTGTTGTTCACTGTGTAAGTCCATTGTCACACTATCTTGAATTTTAGGACTCTGTTTGATCTGACCTTTGTAATACCCAACATCAGTGCTCTTCATTTCAGAAAGCCGATCCAGTCTGTCATGTTGTACCTGCAGGGGGTTAGAGCCATGGTGACCCATGGGTTAGGTTTTGAAATTAAATGATACTATCAAACAAATTGTCAAATGATATTATTGAAAGCATTGTATTAGACTTGCATTACCTGCAACTAAGACTGGGCAATAATTCAATATGATAATTTAACCGTCTTTCAATGGAATCATATTGCGATGAAATCATATATCAAGATATTGTGATATACAATGCGTCTAAATTGATAATAAGCCCATTCTGATTCAGTTTTCTCAGAAAATCTGTTGTGAAACATTTTGGGGGATTATTTGAAgaattgcagatttgttttaacaTGGCATTATtgttgtgcatgcatgtaaacaGTCAGTATAtagctggaaaaaaaagttttctctATAATTTCACTTGAAACTGTTTACCatattgatgattatttgtctaaaatctcattgtaaaaaatattttgtgaaagcaccaattgtcaaccctataatatcatcgatgtatttggtcaaaaatatcatatcatctgattttctccatatcgcccagccctaccacaCTTGTCATAAAGAACAGGAGGCTTGTGTGTCCTTGGTGTGTAAGGCCAAAAGTTCtaggcctatatacagtatggtgtttctcaaactttatCAGACCAAGGACCACTTACCCGATAAAAAAACCAACTCACGGACCACAGAACTGCCAAATTATCCCCCAAAACAATAGACCAGCCAAATAAAATGACACTTCTACAAATAGCTTACTCACTTATTGTCTCTGTTGCCAAGAATGGTGCTGCTGAGGCATCAGGCAAGCAATGTCTGTCAGAAGCCATTGATCCATCTTGTCAGTTGACAATAACAGTAAACTTcatatatccatatatatatcCTTTGAATGTCACGCTGAGGATCATTTGTGACATAAATTGGAGGAGTTGTTGCAAAACGGACGGCATTATTGTTGAAGTTAAACGACACAGCAGAACAGCCAATTTAAATAATTCGTTTGCATTCACACAATATTGAAAACAGCACATCTATGCACCTCACTAGGCTTTGGAGTTGCTGGCAGACAGTTTGAGAAAcagaattttaaataaaaacattattttaccaAATCTACTCATGGACCACCAGGGGTCACTCACTTAATACTCACCATAATAAACACTCATAGGCCAGGCCTATGCATAAGTCtgaa

Function

symbol description
sub1 Enables identical protein binding activity; single-stranded DNA binding activity; and transcription coactivator activity. Involved in negative regulation of DNA metabolic process and regulation of transcription by RNA polymerase II. Located in nucleolus and nucleoplasm. Part of transcription regulator complex.

NR:

description
PREDICTED: activated RNA polymerase II transcriptional coactivator p15

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79517 False 2043 TUCP 0.39 5 4424190 4430041
XM_039802792.1 False 2133 mRNA 0.40 5 4424149 4430090
XM_039802793.1 True 2198 mRNA 0.40 5 4424149 4429863

Neighbor

gene id symbol gene type direction distance location
isl1a isl1,LOC103469637,LOC107374027,LOC107661270,LOC103141950,LOC102231175 coding downstream 314926 4103017 ~ 4109223 (-)
ak6 ak6 coding downstream 575639 3844642 ~ 3848510 (-)
ydjc ydjc coding downstream 580109 3830346 ~ 3844040 (-)
pias2 pias2 coding downstream 607329 3799032 ~ 3816820 (-)
ptar1 ptar1 coding downstream 802669 3606395 ~ 3621480 (-)
LOC120560167 NA coding upstream 31339 4461429 ~ 4471480 (-)
pnpla7b pnpla7 coding upstream 47185 4477275 ~ 4529746 (-)
dph7 dph7 coding upstream 101878 4531968 ~ 4543886 (-)
LOC120559971 NA coding upstream 209014 4639104 ~ 4642738 (-)
si:ch211-158d24.2 megf9,LOC102787576 coding upstream 214514 4644604 ~ 4695210 (-)
G59197 NA non-coding downstream 10168 4413759 ~ 4413981 (-)
G59101 NA non-coding downstream 236677 4187261 ~ 4187472 (-)
G59098 NA non-coding downstream 240232 4183353 ~ 4183917 (-)
LOC120560054 NA non-coding downstream 321235 4099798 ~ 4102914 (-)
LOC120560115 NA non-coding downstream 431205 3985628 ~ 3992944 (-)
G59207 NA non-coding upstream 24600 4454690 ~ 4461071 (-)
LOC120560046 LOC103358197 non-coding upstream 118635 4548725 ~ 4557613 (-)
G59241 NA non-coding upstream 194948 4625038 ~ 4625307 (-)
G59268 NA non-coding upstream 205818 4635908 ~ 4704273 (-)
G59287 NA non-coding upstream 302540 4732630 ~ 4842143 (-)
golph3a golph3,LOC103397487,LOC108249570 other downstream 199581 4209748 ~ 4224568 (-)
G58994 NA other downstream 734811 3688629 ~ 3689338 (-)
G58920 LOC106099046,LOC107687292,LOC107712180,LOC107663003 other downstream 1007295 3415627 ~ 3416854 (-)
G58919 NA other downstream 1026653 3397169 ~ 3397496 (-)
si:ch211-102c2.4 NA other downstream 1184086 3232606 ~ 3240063 (-)
LOC120560375 NA other upstream 2754 4432844 ~ 4436316 (-)
LOC120561493 NA other upstream 1036133 5466223 ~ 5466437 (-)
LOC120561494 NA other upstream 1159483 5589573 ~ 5591810 (-)
G59521 NA other upstream 1996116 6426206 ~ 6426811 (-)
G59563 NA other upstream 2092669 6522759 ~ 6523674 (-)

Expression


Co-expression Network