G59290


Basic Information

Item Value
gene id G59290
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4738049 ~ 4741131 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU79654
ttGTCTTTTacacagattttattttgtcaatagAAAAAGCCTCTAAGCTTTGACTGCAAATTTGCGGATGGAGTAGAGGAGGTCTTTCCTCTGCTGTTTCTTGGTGCGCAGACTCTCCTCATGCTTGTTGAGCCGGCGGCGCAGAGCTCTGGTCTTCTTGGGTCTCAGATCCAGGGGCTTGTACTTCTTACCCTGAAAGAGATTAAATACACTTACAGTGgagctgaacattttatttgaaaCTTGGAAGGACAGGAAAAATGTTAACCTGCAGACGTGGTCAAGATCTAAAATTAATTACCATAAATTGGACCTTGTTTTTCTGCAGTGACAAGGTTGTGCAACGGTTTATTTAGCAACCAGTGACGAGCCAAATCAAAATAATGTTCATGTAAACCATAGGCAGAAATAGCTAAGGGTCAGGACCTACCTCATCTGAGGGTATATAACTGATGTATTTTTCCCGCTATGTAAGTGATTGTAATGTTACCTAGCTCGTTTAATAGATTGGATTGTTAGCTAGCTCCACCCACCATGCTTTCATGCTATACTGGTTACAGAAAATGTGACAAAGTTATCACAAATCTGGCCAGAGAGCACTTTGCTTTTCTATGCTGTGACACAAGTGTGAAtaaaacattaagttgttacattttactAATACAGAAGAGAATAATTCATccaatgtttaaagtgaataaaacagcCCGGCAATTTGGGCTATATtgtttgtgtccccttcaaaattTGCTCTTGGTAAATTCGGTTTATTGTACCATCCAACTGAtggatgaaatgtacagccatGATGTAAACAGTATTGATTATAAGGAACGGGTCATCTCAAGTCTCAGTCTTTTGGTAAGCAGTTGTGAATGCATCAGCAAAACATCAGCTCAACAAGTATCATCCTAGACCAGAGAACCAAAGTGGAAGAGGTTAAATCCCAGACAGACAGGTCTTCATGTGTGGTCAGTGAGGCGCTGTGTTGGTCTCACCTTGTAGAACTTCCTCAGGTTCTCCTTCTGTGTCTGGTTGATTACAGTCAGGACCCTGGCGATCGATTTGCGGACAACACGAATCTTGGAGAGTTTGGAAGCGGCGCCGCCGGTCACTTTAGCCACACGGAGCTGGGACAGCTCATTTTTCAGGTCGTCCAGCTGTTTAAGCAGCTCTTCCTTCTTTTTGCCCCGAAGATCTCGTGCCTTGATCTTGGCCATCTTCCTTCTCGCTGCCC

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU79654 True 1237 lncRNA 0.43 3 4738049 4741131

Neighbor

gene id symbol gene type direction distance location
si:ch211-158d24.2 megf9,LOC102787576 coding downstream 42839 4644604 ~ 4695210 (-)
LOC120559971 NA coding downstream 95311 4639104 ~ 4642738 (-)
dph7 dph7 coding downstream 194163 4531968 ~ 4543886 (-)
pnpla7b pnpla7 coding downstream 208303 4477275 ~ 4529746 (-)
LOC120560167 NA coding downstream 266569 4461429 ~ 4471480 (-)
galnt9 galnt9 coding upstream 18985 4760116 ~ 4866975 (-)
si:dkey-112e17.1 LOC103368838 coding upstream 680490 5421621 ~ 5445464 (-)
pgam5 pgam5 coding upstream 747625 5488756 ~ 5498896 (-)
ranbp1 ranbp1,LOC102791189 coding upstream 849443 5590574 ~ 5594904 (-)
dgcr8 dgcr8,LOC102791485 coding upstream 865900 5607031 ~ 5626385 (-)
G59268 NA non-coding downstream 33776 4635908 ~ 4704273 (-)
G59241 NA non-coding downstream 112742 4625038 ~ 4625307 (-)
LOC120560046 LOC103358197 non-coding downstream 180436 4548725 ~ 4557613 (-)
G59207 NA non-coding downstream 276978 4454690 ~ 4461071 (-)
G59197 NA non-coding downstream 324068 4413759 ~ 4413981 (-)
G59312 NA non-coding upstream 208140 4949271 ~ 4949523 (-)
G59314 NA non-coding upstream 263835 5004966 ~ 5005663 (-)
G59373 golga3 non-coding upstream 694288 5435419 ~ 5453895 (-)
G59388 NA non-coding upstream 726204 5467335 ~ 5515364 (-)
LOC120560122 NA non-coding upstream 887985 5629116 ~ 5633186 (-)
LOC120560375 NA other downstream 301733 4432844 ~ 4436316 (-)
sub1b sub1 other downstream 307959 4424149 ~ 4430090 (-)
golph3a golph3,LOC103397487,LOC108249570 other downstream 513481 4209748 ~ 4224568 (-)
G58994 NA other downstream 1048711 3688629 ~ 3689338 (-)
G58920 LOC106099046,LOC107687292,LOC107712180,LOC107663003 other downstream 1321195 3415627 ~ 3416854 (-)
LOC120561493 NA other upstream 725092 5466223 ~ 5466437 (-)
LOC120561494 NA other upstream 848442 5589573 ~ 5591810 (-)
G59521 NA other upstream 1685075 6426206 ~ 6426811 (-)
G59563 NA other upstream 1781628 6522759 ~ 6523674 (-)
G59739 LOC102786375,LOC102210956 other upstream 2250072 6991203 ~ 6996856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G990351 LOC105014154 misc NC_048575.1 CM023229.2 51129223 ~ 51135485 (+)
mexican tetra (Astyanax mexicanus) G125145 rpl35,LOC107675720,LOC107584597,LOC107585395 non-coding NC_035910.1 CM008313.1 27189188 ~ 27192704 (+)