LOC120561494


Basic Information

Item Value
gene id LOC120561494
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5589573 ~ 5591810 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU79804
AGCAAAGAGTTCATTGGGTTACTAGGAATTGTAATCCATTTTACATGGTAACATGCCATTATTGTCAGGGCCCCTAATGCATTGCTCAGGTTTAAGTGATGTGCAGACTCACTCTGTTCTTTGCTGTTCACTCCAGCCTCGAACTTTTTCTGTCTGCTACATAAACATGCAGAATGTAACACACACTGTTTTTTtttttttttttttcttttttttttattctgaagCAGAGTTTGTAGGGGGAGAGGATAATGTAGCCTGCTGGTTAGCAGCACAGGGCCAGGGACCAGACATTATGGAGGTGCACTATACACATAAAAACCCATGATGCATCTCAGTGGGCCTTCTTACCCTGTCCACTGTCCATGCTTCCACTGTTAGAAACCGCAAGTGAGGTGAAGACCTCTCAGTGGATGCCTTGTAGAAGTAGTTGTTCCTTGGTTCCTTCTTTCATTAGTTCTGTTGGGAACTGACTAGAAGAGGAATCCACTCCAGGCAGTTGAGGGGCCTCAGATGCGTGCTGCAGAGCTCAGCGTCAACTGATGACTGACTGATAGGAGATCAGATGCACATAGCAAagcttttccttttttgttttaattatctGAAAACCAATAAGTCCAAAGTCAACGGTTCATCATAGTTTGGTGCAGCTATTCTCTGACTTAAGTTCCTCACCAGGAAATGGAGTTTGCATTCTTTAGATCATAACATTCCCAGACTTTAAGCATGTAGAGTATATGTAACTGTGTGCCCTATCTGATCTGTGTGCTCACCaccctctccttttctttccacTAATTGAGTTGTTAACCTTGCCTCTAAAGTGCATCTAAGTGCCAGTGCATCTGTAAATACATGTATATGGATGAAATGTTGCTTTTCATTTGAACTCAAATGATTTGAAATGTTTCCTCCACCTTCGAATAAAAGCTGTCAAAGACCATGTTTGCAT
>XR_005639606.1
GCAGACTCACTCTGTTCTTTGCTGTTCACTCCAGCCTCGAACTTTTTCTGTCTGCTACATAAACATGCAGAATGTAACACACACTGTTTTTTCTAAGGCTAGTGTCATTATGTTCTGCTACATTACA

Function

GO:

id name namespace
GO:1990904 ribonucleoprotein complex cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU79804 True 955 lncRNA 0.41 2 5589573 5591810
XR_005639606.1 False 127 snoRNA 0.40 1 5591582 5591708

Neighbor

gene id symbol gene type direction distance location
pgam5 pgam5 coding downstream 90677 5488756 ~ 5498896 (-)
si:dkey-112e17.1 LOC103368838 coding downstream 144109 5421621 ~ 5445464 (-)
galnt9 galnt9 coding downstream 722598 4760116 ~ 4866975 (-)
si:ch211-158d24.2 megf9,LOC102787576 coding downstream 894363 4644604 ~ 4695210 (-)
LOC120559971 NA coding downstream 946835 4639104 ~ 4642738 (-)
dgcr8 dgcr8,LOC102791485 coding upstream 15221 5607031 ~ 5626385 (-)
tango2 tango2 coding upstream 51394 5643204 ~ 5667209 (-)
tbx1 tbx1 coding upstream 457153 6048963 ~ 6061862 (-)
hk2 LOC103369118,LOC106531304 coding upstream 1303392 6895202 ~ 6941736 (-)
ch25hl3 NA coding upstream 1569491 7161301 ~ 7169700 (-)
G59388 NA non-coding downstream 74209 5467335 ~ 5515364 (-)
G59373 golga3 non-coding downstream 135678 5435419 ~ 5453895 (-)
G59314 NA non-coding downstream 583910 5004966 ~ 5005663 (-)
G59312 NA non-coding downstream 640050 4949271 ~ 4949523 (-)
G59287 NA non-coding downstream 747430 4732630 ~ 4842143 (-)
LOC120560122 NA non-coding upstream 37306 5629116 ~ 5633186 (-)
G59437 NA non-coding upstream 38940 5630750 ~ 5631797 (-)
G59440 NA non-coding upstream 50505 5642315 ~ 5642551 (-)
G59441 NA non-coding upstream 50806 5642616 ~ 5642842 (-)
G59457 NA non-coding upstream 367098 5958908 ~ 5961150 (-)
LOC120561493 NA other downstream 123136 5466223 ~ 5466437 (-)
LOC120560375 NA other downstream 1153257 4432844 ~ 4436316 (-)
sub1b sub1 other downstream 1159483 4424149 ~ 4430090 (-)
golph3a golph3,LOC103397487,LOC108249570 other downstream 1365005 4209748 ~ 4224568 (-)
G58994 NA other downstream 1900235 3688629 ~ 3689338 (-)
G59521 NA other upstream 834396 6426206 ~ 6426811 (-)
G59563 NA other upstream 930949 6522759 ~ 6523674 (-)
G59739 LOC102786375,LOC102210956 other upstream 1399393 6991203 ~ 6996856 (-)
G59881 NA other upstream 1992276 7584086 ~ 7584519 (-)
specc1la specc1l other upstream 2135750 7727560 ~ 7766012 (-)

Expression


Co-expression Network