LOC120560122


Basic Information

Item Value
gene id LOC120560122
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5629116 ~ 5633186 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU79818
CGCACGCACGCATACATCTGCTTGCCTCCATGTGCACaaatccagtggtggaagaaggaTTGAGATTGTTTACTTCggtaaaagtactaatgcaCTGTAAAACTACttatactctgttacaagtaagaTAAAATAAGATGAAACTTTATTGTCCGTTCACTCAGAACATTTTCTTGCATCGTCTGCTCCAACAATCAAcagataatataaaaaaataaaaaacatttgtatGGTCACCCATCAAACATCTGACACACCTTtccgtctcacacacacacacacacacacacacacacacacacatttataattgtcatgtaaaagtcctgctttgaaaatgttacttaagtaaaagtatgtaagtatcaggaaaatgtacttaaagtattaaaagtactcaataCAGAAAAAGCATCACATTTTAGTAACTGGAAACAGAAAATGGCATCAAAAAGAGCATTAAAAGTGTGAAAAAAGGGTAAAAAGTCAAATCATTTCAGGTGGACTTGTAAGCCGTTTTATTTTtgtgtagtttaatttataataaaacatggtattttataaactacatgtgttctgtgagCAAAAGTCTtagtgtgtaaagtaactagtaacaaaagctgtcagattacagtaaatatggagtaaaaagtacatttctCTCCGAGATGTAGCGTAGAGTACAAGTAGAAAgtgtcatgaaaagaaaagactcaagtaaagtacaagtacctcaaatttgtacttaatttacttgagtaaatgtacttagttacattccaccactgcacaaGTCCATGTGCAGACAGTGAAGAAAGAGAATCTGACAGACCATAATTAGGAgtggttattattatttataggcACCATTTATTTGACCATTATTTTGCCTACAGTTGTTTACAGTTTGTGCCTGGTGTTGAATTCAATAAAATGGACTGTGT
>XR_005639428.1
tagttcatggcgtagcagggcatagcaggacgtagcagggcactgcagagcgtagcagggtgtagatCAGTATGTCGTGGCCTGTTGGTTGCTGGTGTAGTGGTAATGACTTCTGTTAGATGTACCAAGAAGTCTCATCTCCATTACTAGCTGTGCCGTGAcattaatataattataaatatagGAGATAGATAGGGCTCTCCTCAGGCCTGGTCTTAAGAGGAGACCCCTGCTCCGGTTTTACCTGAttgttcaaacttttttttttaatctgttgtcatttaaatgttattgtaattattattataatgtaatttGCTGAAATGCATGCTGTGCACTCTGCcccattgaaaatgagggtCTCTCTCAATGGGCCCCGAGTTCTAAATAAAGGTTTGAAATGAAATTATTACAATCTCACCCTGTTTTCACCTGGCATTAACATCCGTCCTGAGTGAtcggatcacaagtggacagctctggGGAACGGTGAAAACGCAACATTTGGAGATGGTTTGAGCCGCATGTGTCCACATTCTAATAGCTGTGAGAACGTGTGATGGCCTGCTGCCGCTggggccgtcagacagctttacagcacgcacagagatgagaagggtatgtatcgacttgtctaactctgtcCTGTGTCCACATTAAAGACCGCCTACTCAACTACGCACTCATTCAAAGTCTTTCTCttgtcacagaaaccactgagtGAACCGTGTGTTTTGGATATCATATACTGTCAGGGATGTGATGGCGTTTTTGTTCCTGCATGCACCCTGCAGTCCTATATCCCCGGCTCTCTTGAGTTTTCTGCAGCGCTGTTGCTTTGAAAATAACGTTATCATAGTTGTCTCCTTTGTGCATATGATTGAAATGAACTGTATCCTACATGTGCCACTACACACTGCTATAACTATTATGAGTCCTGGGAAAGAAAAGTGACCTACAATGAATACACAAGTATGCTACCGACATGATATACCTGTTTATTCTTTTGTATAtgatttctttgttgttttttttactgcggTGATGATGACTTGAGATACAGGTATGGAAATctttaattacattatcaaaATAGTCTTGTAGGTCTTTATAATTAatgttatttataatttatctTACTCACTTTGTTATATGTTTTTACTCAGGTGCTGATGGCGCCCGGAGAGAGAAGACATCGTGAAAGAGCGAGACTCAACGCCCCGGCGGTACATCCAGTTTCCATCTTTGGTTCCACTCTGACgaagaagaaacagaaggaCGACTGAGGAGAGGACGAGATGGAGAGCAGGACAGGACTCCTGTATCTCCTGGGGGAACTTGAGAGTGTATGTCAACCAGCCAAACATCCCAGGCAGCTGCAGCACCACAGCAGTCCACCGGACACACCAAACCTGCTTCCAGACCCCCAGACCCCCGAACCAGTGCAGCAACCATTAGAGGAAGAAGACCGCCCCATTCAGGAGGATGAGGAGCGTCCCAAACTCACCTGTGCAGATGAAGCTGTCACTATGGACTTCGTCTGTGCTGGCATGTTTGTGAAGCTCCTCGCACGCACGCATACATCTGCTTGCCTCCATGTGCACaaatccagtggtggaagaaggaTTGAGATTGTTTACTTCggtaaaagtactaatgcaCTGTAAAACTACttatactctgttacaagtaagaTAAAATAAGATGAAACTTTATTGTCCGTTCACTCAGAACATTTTCTTGCATCGTCTGCTCCAACAATCAAcagataatataaaaaaataaaaaacatttgtatGGTCACCCATCAAACATCTGACACACCTTtccgtctcacacacacacacacacacacacacacacacacacatttataattgtcatgtaaaagtcctgctttgaaaatgttacttaagtaaaagtatgtaagtatcaggaaaatgtacttaaagtattaaaagtactcaataCAGAAAAAGCATCACATTTTAGTAACTGGAAACAGAAAATGGCATCAAAAAGAGCATTAAAAGTGTGAAAAAAGGGTAAAAAGTCAAATCATTTCAGGTGGACTTGTAAGCCGTTTTATTTTtgtgtagtttaatttataataaaacatggtattttataaactacatgtgttctgtgagCAAAAGTCTtagtgtgtaaagtaactagtaacaaaagctgtcagattacagtaaatatggagtaaaaagtacatttctCTCCGAGATGTAGCGTAGAGTACAAGTAGAAAgtgtcatgaaaagaaaagactcaagtaaagtacaagtacctcaaatttgtacttaatttacttgagtaaatgtacttagttacattccaccactgcacaaGTCCATGTGCAGACAGTGAAGAAAGAGAATCTGACAGACCATAATTAGGAgtggttattattatttataggcACCATTTATTTGACCATTATTTTGCCTACAGTTGTTTACAGTTTGTGCCTGGTGTTGAATTCAATAAAATGGACTGTGTAACATGA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU79818 False 944 lncRNA 0.34 1 5629123 5630066
XR_005639428.1 True 2518 lncRNA 0.41 2 5629116 5633186

Neighbor

gene id symbol gene type direction distance location
dgcr8 dgcr8,LOC102791485 coding downstream 2731 5607031 ~ 5626385 (-)
ranbp1 ranbp1,LOC102791189 coding downstream 34212 5590574 ~ 5594904 (-)
pgam5 pgam5 coding downstream 130220 5488756 ~ 5498896 (-)
si:dkey-112e17.1 LOC103368838 coding downstream 183652 5421621 ~ 5445464 (-)
galnt9 galnt9 coding downstream 762141 4760116 ~ 4866975 (-)
tango2 tango2 coding upstream 10018 5643204 ~ 5667209 (-)
tbx1 tbx1 coding upstream 415777 6048963 ~ 6061862 (-)
hk2 LOC103369118,LOC106531304 coding upstream 1262016 6895202 ~ 6941736 (-)
ch25hl3 NA coding upstream 1528115 7161301 ~ 7169700 (-)
erlin2 LOC100709255,LOC101468631,LOC102303107,LOC102789125,LOC102208735 coding upstream 1549627 7182813 ~ 7212011 (-)
G59388 NA non-coding downstream 113752 5467335 ~ 5515364 (-)
G59373 golga3 non-coding downstream 175221 5435419 ~ 5453895 (-)
G59314 NA non-coding downstream 623453 5004966 ~ 5005663 (-)
G59312 NA non-coding downstream 679593 4949271 ~ 4949523 (-)
G59287 NA non-coding downstream 786973 4732630 ~ 4842143 (-)
G59440 NA non-coding upstream 9129 5642315 ~ 5642551 (-)
G59441 NA non-coding upstream 9430 5642616 ~ 5642842 (-)
G59457 NA non-coding upstream 325722 5958908 ~ 5961150 (-)
G59501 NA non-coding upstream 544565 6177751 ~ 6177970 (-)
G59505 NA non-coding upstream 587399 6220585 ~ 6220850 (-)
LOC120561494 NA other downstream 37306 5589573 ~ 5591810 (-)
LOC120561493 NA other downstream 162679 5466223 ~ 5466437 (-)
LOC120560375 NA other downstream 1192800 4432844 ~ 4436316 (-)
sub1b sub1 other downstream 1199026 4424149 ~ 4430090 (-)
golph3a golph3,LOC103397487,LOC108249570 other downstream 1404548 4209748 ~ 4224568 (-)
G59521 NA other upstream 793020 6426206 ~ 6426811 (-)
G59563 NA other upstream 889573 6522759 ~ 6523674 (-)
G59739 LOC102786375,LOC102210956 other upstream 1358017 6991203 ~ 6996856 (-)
G59881 NA other upstream 1950900 7584086 ~ 7584519 (-)
specc1la specc1l other upstream 2094374 7727560 ~ 7766012 (-)

Expression


Co-expression Network