G59742 (snrnp27,LOC102787093)


Basic Information

Item Value
gene id G59742
gene name snrnp27,LOC102787093
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6997087 ~ 7027204 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU80237
ctttttcataACTGGGACCACAAccacacatttttaaaatgccTTTATTTCAAATACAACCCTACACACTTCAACAACACAAAGCTCAATGCATTGTGTCTCCCATCAATATTCAGACACAGTTGATAGGAGAcgaccccctcccccccccaaaaaaaagtatatacagAATTGTTGCATAACATAAAACAGGTTTGAAATAATAAGAAATAGCACTATATCATCCTCTACTTTACGGGGAGAACGGAGGTAAGCTTCTCAGGTATCACAATGAGATGTTGATACTTTCATGCGATGAAGTCCAGTGGTCTGTTGAATCCACCTTTTCTGTTCATGTACTGcCTGTATTTTCTCTTCATGGTCACATTGATAGCAAAGGCATTGACCGATCCATCAGTTTTCCTCCCCTTGCTGGTGGAAAAGGAACCAAATCCCATCTGTTTCATCATCTCAATTTCCTCTTCTGTTTTGCCCTCCATGTCTTCCTCCGAGATCTGAATGGGCTTTGCTGACTTGTCCTTCGCGTCTTTGCCCTCATCAGagggggaggtggaggaggagggatgacGTCGGGGTGGAGACCTTGAACGTCTCCTGTGAGGAGATCGTGAGCGACTCCTCCGCCGCTCGCGGTCCCGATCCCGAGAACGAGTGCGTTCCTTTTCCCTCCGCCTTCGCTCGCGCTCCCTTGAAGTTGAGCGGGAACGCCTTCGCTCTCGTCTCGGAGGAGTTCGACTCCTGCTCCTGCCCATTCTCCCAAATTAATCAAATGTCACCCTCTTAGGTCAATGTAATACTAAATAGAACTCAATTTGAGGGGAGAACTATGAACAAactgtgttgtttgtatttctttagaGTAATGGCTGCAACTTCAAGGCAGGCTATCCTGTTGTCTTTTACATGCGAGCTTCCGGTGATATTTCTGCAGATGAGCGCCCTCTACCGACGAGGAGGAGAGTTTTTACAGCGGTTGGCA
>TU80239
AAATGGAATGTGCTCCAGTCTCTCGACTGCTCTCGGTAGAACGGCTCTTTCCCCTTTCTTGTTAATACCTGGtgaacggggggggggggcagtgagGAAGTAGTGTACAAAGACGTACCAGCACCTGCCAAGACATACCGGCGTTCGGCCCCGGTGGCTGGTGTTAAAAGTTTCCGAAACCTGTTAGTGACCCCTCCCCGCCCCCTGTCGTCACCAGGCTCAGACGTGACATACACACGTTATGATAAAAAAGGATGCTGTTTAAGAAAAACGCCACAGTCATcagagagaggcagaaaaaaaccatcaaatcccccccccccaaaaaaaagtatatacagAATTGTTGCATAACATAAAACAGGTTTGAAATAATAAGAAATAGCACTATATCATCCTCTACTTTACGGGGAGAACGGAGGTAAGCTTCTCAGGTATCACAATGAGATGTTGATACTTTCATGCGATGAAGTCCAGTGGTCTGTTGAATCCACCTTTTCTGTTCATGTACTGcCTGTATTTTCTCTTCATGGTCACATTGATAGCAAAGGCATTGACCGATCCATCAGTTTTCCTCCCCTGTTTGAAAACAATGTTACTGCCTCTCACATACAAATAATCATATTAACAGTTCAAGTGAAATAGTGACAGATTACTAATTTACAAGATGCAGTAGTCTTTGCTTGACTTCCATTGCTCCTTTTATTCACACAACTAGTTTGTGAGGATCATTTGGAAAAGAAGCCATTGCAAATCCATTCTAAACTACAATAAGCATACAACTGAAATGAACAATTAAGAAAATACTATACAATGTCAACATAAATATTCCCGaagaagtcccattcaccttgtcTCACTTCACCATCAACggaaattagggatgcaccgaatccaggctTCGGATTCGGGCAAATTTTTTTCCCACCTatccgaaccctacgcttgtaCTAcacgcgctacgctggtcgacgtaatgacgccgccgttgattatgggaaggtgtttacgtaggtggagcgttcaatgcagtaggctgtgagaaagtgaaaatggaactcatgagcagaaaaagtgttttttggcAGTATTTTCAGTCAAAAAGTAGCCATTCAaatccagctacatgttcaattggcaatgccgatttgtcttgtggtggcgaggaccctaaacaatacacatttggtatgaaacatccgaaagaatacgagttgtgcgtgaaggaatctacagacagcagccaaaatgcagtaacttcaggtacggcaaaggaaggacagtcacagcaaAAAACTGATGTTAACCAGACCACGGACtcaggatgggagtaggattcggtattcagtTTCGGCAGAAtgttaaccagtggattcggcaTTCGGCCGCACCcaaaaaaatctggattcggcgCATCCCTAacggaaatgttcagtttaatgtgAATTATAACGACCACGAGAGCAGCCTTGATAGCCCGCTAGCTCACTTAACACCTCAGCTAATGTTGTGTCAACCCGCAGCTACTGAAACAGCACCTGGTTCAAGGAATTTGTCCCGATAGCTAGGGATAGCAGGGCAGCACCCCATCACACACAACAGTCTGATGCCAAGCAAGGAGGAGATACTGTGGTAGCTTTAAACAGCTACAGATTTTATGTTAAACTGTAGACACGGAACAGACTATTTCCTTTAGCGGAAGCAATACAATCATTTGAAATCAATAAAATCCTTTTTAAAATCTATACTTtgtgtcaaattattgatttatttggtaagtagCCGTGTACTAAgtgggataatgtagagcgaggcagTCATTATAGCGACTATAACCCCTTCAAAcccccttttcaaaattaaactaCTTTTTCGGACACtgactaaaaataaataaataaataaataaataaataataatgcaatGGCAGTCTTTCTGCAAAAACAAATgtcacgccaattcgtatgcagTTTTTgcatgttatcaagacgcataatcgctttttagcatgtttatcaacgccgttcggccACCATTGACctttacgtgtgaattttcaccATAGCGAGTAGTAAAGGACGTAAGTCCGCGGATGTGTAAAACACAggcctttcacccaggagagccgggattgCATCCCACGTGTGGAGTTTGTCAACcgttgttttattgttaattttgtttttttaagccttccccactgtttctttcctaaacccaaacgtttattgttttctaagcgtgtgacgttggtcaccctCATGTTTTTGTCgtctcagaggaggagaggttagtgaggccagcgtctccgCACAGGTGGCAGTGCGCACGGATCCgctgcgccacgcatggatgaaataatgaaataacagaaatatgtgcagaattaagacccagtgtttggtggaccgggaTACACCttgcgccatggatgtctgaggcTCAGCAACTACTAACTAAAAAAGATATAAtctgcctgttcccagcattagcacaacactttgcgatggttagcttgttacctgtgacgatatatgctaaatgtaacatctctttcacattagcgtgtgagtgactgacctataggtgcgttttgagatgcctgatgaagtcagACGCTGTTGATCCGCCATCATTTATGTTGGTGCCagacaccttgcatgtagctgttggcttactgccactgtttaccaagttattgaaaacaaaactaatgacaaaaggcacaactccgggaggacttggtgtcgc

Function

symbol description
snrnp27 Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80237 False 979 lncRNA 0.47 6 6997087 7007287
TU80239 True 2752 lncRNA 0.43 3 7004325 7027204

Neighbor

gene id symbol gene type direction distance location
hk2 LOC103369118,LOC106531304 coding downstream 55351 6895202 ~ 6941736 (-)
tbx1 tbx1 coding downstream 935225 6048963 ~ 6061862 (-)
tango2 tango2 coding downstream 1329878 5643204 ~ 5667209 (-)
dgcr8 dgcr8,LOC102791485 coding downstream 1370702 5607031 ~ 5626385 (-)
ranbp1 ranbp1,LOC102791189 coding downstream 1402183 5590574 ~ 5594904 (-)
ch25hl3 NA coding upstream 134097 7161301 ~ 7169700 (-)
erlin2 LOC100709255,LOC101468631,LOC102303107,LOC102789125,LOC102208735 coding upstream 155609 7182813 ~ 7212011 (-)
LOC120561006 NA coding upstream 193637 7220841 ~ 7223583 (-)
znf703 znf703,LOC103397455 coding upstream 255212 7282416 ~ 7285425 (-)
LOC120560561 tia1 coding upstream 469307 7496511 ~ 7510835 (-)
G59674 NA non-coding downstream 38775 6954928 ~ 6958312 (-)
G59663 NA non-coding downstream 102637 6838511 ~ 6894450 (-)
G59630 NA non-coding downstream 175182 6821528 ~ 6821905 (-)
G59629 NA non-coding downstream 178619 6818183 ~ 6818468 (-)
G59602 NA non-coding downstream 200417 6759512 ~ 6796670 (-)
G59756 NA non-coding upstream 74369 7101573 ~ 7148806 (-)
LOC120560930 NA non-coding upstream 338228 7365432 ~ 7366200 (-)
LOC120560966 NA non-coding upstream 339053 7366257 ~ 7367921 (-)
G59802 NA non-coding upstream 396959 7424163 ~ 7424364 (-)
G59855 NA non-coding upstream 466684 7493888 ~ 7494179 (-)
G59739 LOC102786375,LOC102210956 other downstream 231 6991203 ~ 6996856 (-)
G59563 NA other downstream 473413 6522759 ~ 6523674 (-)
G59521 NA other downstream 570276 6426206 ~ 6426811 (-)
LOC120561494 NA other downstream 1405277 5589573 ~ 5591810 (-)
LOC120561493 NA other downstream 1530650 5466223 ~ 5466437 (-)
G59881 NA other upstream 556882 7584086 ~ 7584519 (-)
specc1la specc1l other upstream 700356 7727560 ~ 7766012 (-)
anapc7 anapc7 other upstream 850195 7877399 ~ 7887425 (-)
G60145 NA other upstream 1373818 8401022 ~ 8402566 (-)
tacr1a tacr1,LOC102799894,LOC100703444,LOC102196095 other upstream 1616199 8643403 ~ 8727443 (-)

Expression


Co-expression Network