G59804 (tia1,LOC104967008)


Basic Information

Item Value
gene id G59804
gene name tia1,LOC104967008
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7498489 ~ 7504014 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU80312
ACTCTCCAAATTTCAAGTCAAGCGAGGCCTAGCCTCTTTCTCTGGAATTGTGCATTTACTGTACATTCAACAATCACACCTTTGTACAGAGCCTATTTATACAGCTGGTCACCAAGAAGTTTAGACTGTCAACAACATATGGCCTCTCCTTTATTTGTCTTGGGTGCACAATGTCACTGCACATAGGTTgtctaaataaaaacaaaatttgaTAACAACCTACAAAAAGATATTTAACATGTCCTACTGACATTCATATACAGATGAAATCCTCAAGATAAACGTAGAAATAGAAATCAAtgaaatcaaaaaggaaaataatgtaaaaagctATGACATGAACGtagacatacaaaaaaaacaaacaaaaaaaaaacaagtgaacAGTCTTACAGAACACAGTCCTTACACACAGTAGGCAATCGTACAAAAAGGGAAGTGAATTCTTCATTAACAAATTTAGCCAGGTGTGGACAGGAAGGGACAACTTTGTTCTGGGCTTTTAGCATTTATCTTATTCAGCCACTTTAGTCAGTTACCTTTAAATCTAAAATTCACGAAATAAAGCTTTAGCAAGTTCaagccaagttttttttttccttttcttcttacAATCATTTTTGGAACAGACTAAAGTTTTGAACCATTATGGGCTAGAAttcaagtgacaaaaacatttttggaaCAGACCCCTAGGATGTGATGTGCACAGTGAGCAGTTGTGACACACTGAAACATGATTTACAACAAAATTAAAGTTCAGAttgtcctgtgtttgtgtgtgtgtctgtgtgtgtgtgggaggggacTTATTTCTCAATCTCCTCAAGAGGAGTGAATTGAGGGGCTGtagggttggggggggggggttgggtgCACAGCTCCCTGGTGTGGTTCTCGCTGCACCGGTCTTGCACGGGGACTCTGGTGGTGCTGGAGTAGAAGGAGGCGGTGAATGGGGAGCCCTGTGCACACCGTGCTACTTACTTGAAGCCCTGCTGGTTCCAGGCCTGGCCGTAGACGCCGTAGGTGGGGACCTGCCACCCATTCGGGACGTACTGGCTGATCTGGGGCCCGTTGCCGTACCACTGGCCCCACTGGCCATAGGGCTGGGCTGCCGCAGGGAAGCTCATCTTGCTCTGCTGGGGTATAGGCATCTGCTGCATCGGGTTCATCATGTCCGGGGTCTCTTTTCCCCAGTAGCATTTGACTATGTGGCCCTCTATTGAGGTGCCATTCACTGACACAATGGCATGGGCTGCTGACTCATGGGAGTTAAACCTCACAAATGAATAGCCTTTGTCGGGGAAAACTCTGATTTCCATGATTTGTCcaaagggagagaaagtctgTCTCATCAGTTGCTCTGTCAGTCCTGTGCTGACTCCGCCACAATACACAGTGCAGTTACTGGGACTGGACTGATTCACTACTTCGTCAAAGGATAGGTGCTTGGAGTTACTTTCATAGGTGGTCTTTGGGGCGGGGGGCTTTCTTGTTGCCCAGTTGGTTCGAATCTGTCTGCCTCCTAACCACTGACCGCCCATCTGCTGAATGGCGTTCTCTGCATCCTGGAACGCAGAAAGGAACAGGGTTATTCCATCGAGCTGGAGTGTAATAACGTAAGACAATCTCACATATATCCCTTTGGAAGCACAGAACCCGGTCATTTGTGAAAATGTCTAATGCAACTTGAAAAGAAGGAAAGGGTTCCGTTTTTGGAGCATGTTCCTTTGATAATTCCCATACAGTAACAGCAGA
>TU80313
ACTCTCCAAATTTCAAGTCAAGCGAGGCCTAGCCTCTTTCTCTGGAATTGTGCATTTACTGTACATTCAACAATCACACCTTTGTACAGAGCCTATTTATACAGCTGGTCACCAAGAAGTTTAGACTGTCAACAACATATGGCCTCTCCTTTATTTGTCTTGGGTGCACAATGTCACTGCACATAGGTTgtctaaataaaaacaaaatttgaTAACAACCTACAAAAAGATATTTAACATGTCCTACTGACATTCATATACAGATGAAATCCTCAAGATAAACGTAGAAATAGAAATCAAtgaaatcaaaaaggaaaataatgtaaaaagctATGACATGAACGtagacatacaaaaaaaacaaacaaaaaaaaaacaagtgaacAGTCTTACAGAACACAGTCCTTACACACAGTAGGCAATCGTACAAAAAGGGAAGTGAATTCTTCATTAACAAATTTAGCCAGGTGTGGACAGGAAGGGACAACTTTGTTCTGGGCTTTTAGCATTTATCTTATTCAGCCACTTTAGTCAGTTACCTTTAAATCTAAAATTCACGAAATAAAGCTTTAGCAAGTTCaagccaagttttttttttccttttcttcttacAATCATTTTTGGAACAGACTAAAGTTTTGAACCATTATGGGCTAGAAttcaagtgacaaaaacatttttggaaCAGACCCCTAGGATGTGATGTGCACAGTGAGCAGTTGTGACACACTGAAACATGATTTACAACAAAATTAAAGTTCAGAttgtcctgtgtttgtgtgtgtgtctgtgtgtgtgtgggaggggacTTATTTCTCAATCTCCTCAAGAGGAGTGAATTGAGGGGCTGtagggttggggggggggggttgggtgCACAGCTCCCTGGTGTGGTTCTCGCTGCACCGGTCTTGCACGGGGACTCTGGTGGTGCTGGAGTAGAAGGAGGCGGTGAATGGGGAGCCCTGTGCACACCGTGCTACTTACTTGAAGCCCTGCTGGTTCCAGGCCTGGCCGTAGACGCCGTAGGTGGGGACCTGCCACCCATTCGGGACGTACTGGCTGATCTGGGGCCCGTTGCCGTACCACTGGCCCCACTGGCCATAGGGCTGGGCTGCCGCAGGGAAGCTCATCTTGCTCTGCTGGGGTATAGGCATCTGCTGCATCGGGTTCATCATGTCCGGGGTCTCTTTTCCCCAGTAGCATTTGACTATGTGGCCCTCTATTGAGGTGCCATTCACTGACACAATGGCATGGGCTGCTGACTCATGGGAGTTAAACCTGGACAAAGACAGGGGGGATGTGTGGGGTGAGTAGAGGATTCATATATTTATTAGAAAGACTACAGTATGTAGTTACTTATA

Function

symbol description
tia1 Enables mRNA 3'-UTR binding activity. Is expressed in brain; retina; retinal ganglion cell layer; retinal inner nuclear layer; and trunk. Orthologous to human TIA1 (TIA1 cytotoxic granule associated RNA binding protein).

NR:

description
PREDICTED: nucleolysin TIA-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80312 True 1761 lncRNA 0.45 5 7498489 7504014
TU80313 False 1364 lncRNA 0.44 2 7498489 7500781

Neighbor

gene id symbol gene type direction distance location
bmp10 bmp10,LOC101468345 coding upstream 355469 7140197 ~ 7143020 (+)
arhgap25 arhgap25 coding upstream 361638 7108813 ~ 7136851 (+)
cds2 LOC104924982,LOC103361071,LOC106535345,LOC107098564,LOC105938002 coding upstream 396595 7075326 ~ 7101894 (+)
mxd1 mxd1,LOC106535940,LOC102787379 coding upstream 471602 7008164 ~ 7026887 (+)
snrnp27 snrnp27,LOC102787093 coding upstream 491230 6997153 ~ 7007259 (+)
rchy1 rchy1 coding downstream 8025 7512039 ~ 7519772 (+)
LOC120560565 LOC103361063,LOC101470473,LOC101159109,LOC100710325,LOC108235010,LOC107393511 coding downstream 46600 7550614 ~ 7572968 (+)
si:ch211-12e13.1 NA coding downstream 72221 7576235 ~ 7597214 (+)
LOC120560421 p2rx4,LOC102791813 coding downstream 128678 7632692 ~ 7639409 (+)
LOC120560946 p2rx4,LOC102791813 coding downstream 145759 7649773 ~ 7657652 (+)
G59803 NA non-coding upstream 4285 7493888 ~ 7494204 (+)
G59696 NA non-coding upstream 235146 7179493 ~ 7263343 (+)
G59694 NA non-coding upstream 391635 7082014 ~ 7106854 (+)
G59687 NA non-coding upstream 469180 7027298 ~ 7029309 (+)
G59627 NA non-coding upstream 682983 6815248 ~ 6815506 (+)
G59833 NA non-coding downstream 83781 7587795 ~ 7588630 (+)
G59826 NA non-coding downstream 126492 7630506 ~ 7631241 (+)
G59837 NA non-coding downstream 131581 7635595 ~ 7636054 (+)
G59839 NA non-coding downstream 142691 7646705 ~ 7647149 (+)
G59931 pptc7,LOC106585473,LOC104951761 non-coding downstream 416763 7920777 ~ 7924556 (+)
zgc:65851 LOC103361079,LOC101467048,LOC102210174 other upstream 447717 7009646 ~ 7050772 (+)
add2 LOC102210956,LOC102786375 other upstream 501633 6969119 ~ 6996856 (+)
kat6a kat6a,LOC102311194,LOC106937639,LOC106932925 other upstream 779605 6674864 ~ 6718884 (+)
G59347 NA other upstream 2000735 5495155 ~ 5497754 (+)
golga3 golga3,LOC102797501 other upstream 2029279 5448061 ~ 5469210 (+)
LOC120560567 ier3ip1,yee9,LOC103361062,LOC100710589,LOC107393509,LOC105014506,LOC103152384 other downstream 70711 7574725 ~ 7576136 (+)
susd1 susd1 other downstream 96078 7600092 ~ 7623715 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other downstream 121722 7625736 ~ 7630180 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other downstream 343657 7847671 ~ 7878371 (+)
cux2b cux2,LOC102795992 other downstream 443238 7947252 ~ 8051340 (+)

Expression


Co-expression Network