XLOC_005137 (noc3l)


Basic Information

Item Value
gene id XLOC_005137
gene name noc3l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 5399680 ~ 5418340 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009948
CTGTCCATGTGGTGCGTGTTTGAAGAGTGGATTCATGCACTCTTCAGTTTTAGGATTAAACTGAATCACACGTTTGAATTATTGTCGACCTTAAGTCAAATCATCGCTCAAAATGGGCCCGGCttctaaaagaaacaagaaaaagaGGCCTAGCTTCAGAAAGTTACTGAAAACCAGTAACCTGAAGCTAGAAAACAAACTGAAGAATCGGCAGTTTAAGCAACAGAGTTCGGCTAAAAAACAACGCAAAGAGCAGAGGAAACTCCACAAGGCCATTTCTGATGTTTCCCATCAGACCCTCAAACCCCTGGAGCGCTACAAGAAGAGACCCGaggatgaagaggaggaggaagagttCCTGGAGTCTCTGCCCACAGATATGATGGATGAAGATGATCTGGAACACATCAGAGCCATCGCACAGAAAGCCTCTTTTCTGACCCGCGACCTCTCTTCATGTGCTCCAGTACATGCCAAAAAGCATAAGTCTGAGCAGGCGCTGGAGAATTATGAGAAGATGCCCAGAAAGATGCAGCAGGAGGAAGAGAAAGAGCTTATTCACTTGCTGCCCATCAAAGACAAGAGTGGCCTGATCCCTCAGAGCATGGAGAAACCTGTTTTACCACaggcagaagaagaagaagaggaaccAAACCAGGAGGTTTACTTACAAAAAGAGGAGGAACCAGAGAGCGCTCCATTGCTAACACCTCAGGAGCAGTTTGAGCAGCGCGCACAGAAACTGATGGAGAAGAAACTGCGCATCGCCGCTCTGTCCTCTGCAATACTGGCAGATCCACATGTTAATATCAAGAAGCTGAAGGAGCTGAGGGCCATGCTGATGGAGACAGACCCCTGCGTTGCCGTCACCGTCAGAAAGTTAGTCATGGTCTCCCTCATGGAGGTCTTTAAGGACATTGTGCCGGCATATCGAATCCGACCTCTGACGGAAGAAGAGAAGGCCGCAAAGGTGAAGAAAGAGACGCTGCAGCTCAGAGAGTTTGAGGAGGGTCTGGTCAGCCAGTATAAGTTTTACCTGGAGGAGCTGGAACAGACAGTCAAAGACTGGAAGCAGAAGAAGGAGAAGAGAAGTCAGGCCGTGTCTCTGCAGTCCTACAAGGGTCTTGCTGAAGTGGCCGTGCGCTGCATCTGTGAGCTGCTGGTTGCTCTGCCACACTTCAACTTCCACAACAACATTATAGTCATGCTGGTGCCTTTGATGAATGACTCCGACAAGAAGGTGTCTGAGATGTGTTGTGAAGCTGTAAAGAAGCTGCTGAAACAGGATAAAGTGGGCCAGGCCTCGTTAGCCATGGTCAAGGTGATCTCAGGAATGGTCAAGAGCAGGAACTATAGGATCAAACCAGTGGTGCTGAACTGTCTTCTGTGTCTGAGAATAAAAGAAGTGGACATGAAGAAAGACACTGAAGATACTGCACCCAAAAAAAAGTTCATGTCATTCAAGGAGAAGAGGAAAAATTTATCCAGGATGCAGCGGAAGTGGAAGAAAGCAGAGGAGAAGCTGCAGAAGGAACTGCTGGAAGCTGAAGCTACAGAGAGCAAGGAGAAGAAAATTAAACTGCACACAGAGACGCTGAACGTCGTGTTCTTAATCTACTTCAGGATACTGAAGAAAGCTCAGAAGTCCGTCTTACTGTCCTCCGTTTTAGAAGGTCTTGCAAAGTTTGCTCATCTGATAAACCTGGAGTTCTTTGATGATTTGTTAGCCGTGTTGTACAACCTCATCACATCAGGGGATCTGACGTATCGCGAGAGTCTCCACTGCATTCTCACGTCCTTCCACATCCTTTCAGGACAAGGTGACGTCCTCAACATTGACCCCCTGAAATTCTACAGCCACTTGTACAGAACGCTGCTGACGCTACACGCAGGAGGAGTGAATGAGGACACTGTGATCGTCCTGCAGTGTCTGGACGTGATGCTGTCCAAGCGCAGGAAGCAGGTGACGCTGCAGAGAGCGCAGGCCTTCCTCAAGAGGCTGAACACTGTGGCTCTACATCTGCTGCCAGACTCGTGTGTGGGCATTCTGGCTGCTAACAGGATGCTGATACCTTCCCCAAGTGTGACATCCTTCTGGATAATGAGACGCAGGGCAGTGGTGTGTATCTGCCAGAGCTGGACGTGCCTGAATACTGCAACCCGCAGAACACAGCACTCTGGGAGCTGCACTTACTCAAGagccaTTATCATCCCGTGGTGAGGAAGTTTGCAGCTCATCTGATGAAGGGAGCTCCTAGTGAAGGATCTGGTGCTCTGGGTGTGGAGCTCAGCagaagGTCTCCGTTACAGCTCTTTGAAGACTACAGTGTGAAAGACATGAGCTTTAACCCACCTGTTGCAGGACCAccttccaagaaaaaggAGTATTTCACCATCGGTCATGCATTCTTACATAGTGAGCTGAGTCGTCAGATTGATGCCGCTCTTCAGGAGGAACCTGAACAGATGAGTCTAGACTTCACATCACCACACACACAGCAGGAACCATGAACAGATGATTACAGTATggtgtaaaataataaatgatatccGCTTTGATTTCTA
>TCONS_00009947
CTGTCCATGTGGTGCGTGTTTGAAGAGTGGATTCATGCACTCTTCAGTTTTAGGATTAAACTGAATCACACGTTTGAATTATTGTCGACCTTAAGTCAAATCATCGCTCAAAATGGGCCCGGCttctaaaagaaacaagaaaaagaGGCCTAGCTTCAGAAAGTTACTGAAAACCAGTAACCTGAAGCTAGAAAACAAACTGAAGAATCGGCAGTTTAAGCAACAGAGTTCGGCTAAAAAACAACGCAAAGAGCAGAGGAAACTCCACAAGGCCATTTCTGATGTTTCCCATCAGACCCTCAAACCCCTGGAGCGCTACAAGAAGAGACCCGaggatgaagaggaggaggaagagttCCTGGAGTCTCTGCCCACAGATATGATGGATGAAGATGATCTGGAACACATCAGAGCCATCGCACAGAAAGCCTCTTTTCTGACCCGCGACCTCTCTTCATGTGCTCCAGTACATGCCAAAAAGCATAAGTCTGAGCAGGCGCTGGAGAATTATGAGAAGATGCCCAGAAAGATGCAGCAGGAGGAAGAGAAAGAGCTTATTCACTTGCTGCCCATCAAAGACAAGAGTGGCCTGATCCCTCAGAGCATGGAGAAACCTGTTTTACCACaggcagaagaagaagaagaggaaccAAACCAGGAGGTTTACTTACAAAAAGAGGAGGAACCAGAGAGCGCTCCATTGCTAACACCTCAGGAGCAGTTTGAGCAGCGCGCACAGAAACTGATGGAGAAGAAACTGCGCATCGCCGCTCTGTCCTCTGCAATACTGGCAGATCCACATGTTAATATCAAGAAGCTGAAGGAGCTGAGGGCCATGCTGATGGAGACAGACCCCTGCGTTGCCGTCACCGTCAGAAAGTTAGTCATGGTCTCCCTCATGGAGGTCTTTAAGGACATTGTGCCGGCATATCGAATCCGACCTCTGACGGAAGAAGAGAAGGCCGCAAAGGTGAAGAAAGAGACGCTGCAGCTCAGAGAGTTTGAGGAGGGTCTGGTCAGCCAGTATAAGTTTTACCTGGAGGAGCTGGAACAGACAGTCAAAGACTGGAAGCAGAAGAAGGAGAAGAGAAGTCAGGCCGTGTCTCTGCAGTCCTACAAGGGTCTTGCTGAAGTGGCCGTGCGCTGCATCTGTGAGCTGCTGGTTGCTCTGCCACACTTCAACTTCCACAACAACATTATAGTCATGCTGGTGCCTTTGATGAATGACTCCGACAAGAAGGTGTCTGAGATGTGTTGTGAAGCTGTAAAGAAGCTGCTGAAACAGGATAAAGTGGGCCAGGCCTCGTTAGCCATGGTCAAGGTGATCTCAGGAATGGTCAAGAGCAGGAACTATAGGATCAAACCAGTGGTGCTGAACTGTCTTCTGTGTCTGAGAATAAAAGAAGTGGACATGAAGAAAGACACTGAAGATACTGCACCCAAAAAAAAGTTCATGTCATTCAAGGAGAAGAGGAAAAATTTATCCAGGATGCAGCGGAAGTGGAAGAAAGCAGAGGAGAAGCTGCAGAAGGAACTGCTGGAAGCTGAAGCTACAGAGAGCAAGGAGAAGAAAATTAAACTGCACACAGAGACGCTGAACGTCGTGTTCTTAATCTACTTCAGGATACTGAAGAAAGCTCAGAAGTCCGTCTTACTGTCCTCCGTTTTAGAAGGTCTTGCAAAGTTTGCTCATCTGATAAACCTGGAGTTCTTTGATGATTTGTTAGCCGTGTTGTACAACCTCATCACATCAGGGGATCTGACGTATCGCGAGAGTCTCCACTGCATTCTCACGTCCTTCCACATCCTTTCAGGACAAGGTGACGTCCTCAACATTGACCCCCTGAAATTCTACAGCCACTTGTACAGAACGCTGCTGACGCTACACGCAGGAGGAGTGAATGAGGACACTGTGATCGTCCTGCAGTGTCTGGACGTGATGCTGTCCAAGCGCAGGAAGCAGGTGACGCTGCAGAGAGCGCAGGCCTTCCTCAAGAGGCTGAACACTGTGGCTCTACATCTGCTGCCAGACTCGTGTGTGGGCATTCTGGCTGCTAACAGGATGCTGATGCAGACCTTCCCCAAGTGTGACATCCTTCTGGATAATGAGACGCAGGGCAGTGGTGTGTATCTGCCAGAGCTGGACGTGCCTGAATACTGCAACCCGCAGAACACAGCACTCTGGGAGCTGCACTTACTCAAGagccaTTATCATCCCGTGGTGAGGAAGTTTGCAGCTCATCTGATGAAGGGAGCTCCTAGTGAAGGATCTGGTGCTCTGGGTGTGGAGCTCAGCagaagGTCTCCGTTACAGCTCTTTGAAGACTACAGTGTGAAAGACATGAGCTTTAACCCACCTGTTGCAGGACCAccttccaagaaaaaggAGTATTTCACCATCGGTCATGCATTCTTACATAGTGAGCTGAGTCGTCAGATTGATGCCGCTCTTCAGGAGGAACCTGAACAGATGAGTCTAGACTTCACATCACCACACACACAGCAGGAACCATGAACAGATGATTACAGTATggtgtaaaataataaatgatatccGCTTTGATTTCTA
>TCONS_00009949
GTGTGCgtgcgtgcctgtgtgtgtgtaaaatgctGTCTTCTTCTGGTGAAATTTGTTCTGGTATTCTGGGTAAATACATTCAGTAATGATGTCATAGAAAGCATCTAGACCCAGTTTTGCAGAAAATCTGTGgcatttcataaaaaaatgtgaGATCTGCAAAATTTTgtgtagtttgcttgtttttgtgatAAATTCAGCAATCTCAAAATCCTGGAAGGACTGTAAACGAAATGAGACCTtctccaaaacaaaaaaatataataggaaatactgtaaaaattttcttgctctgttaaacagcacttgggaaatatttgaaggattggacaggagggctaatcattttgtcttcaattGTGCTTGAAACAATTCGTTTTAAGGAATACCTGTGGAAGTACCATTTGTGCTGGTGTTGTTTGTGTCTGTTCAGGTGTCTGAGATGTGTTGTGAAGCTGTAAAGAAGCTGCTGAAACAGGATAAAGTGGGCCAGGCCTCGTTAGCCATGGTCAAGGTGATCTCAGGAATGGTCAAGAGCAGGAACTATAGGATCAAACCAGTGGTGCTGAACTGTCTTCTGTGTCTGAGAATAAAAGAAGTGGA

Function

symbol description
noc3l Predicted to enable chromatin binding activity. Acts upstream of or within muscle organ development and regulation of lipid metabolic process. Located in nucleus. Is expressed in several structures, including alar plate midbrain region; brain; head; immature eye; and trunk. Orthologous to human NOC3L (NOC3 like DNA replication regulator).

GO:

id name namespace
GO:0019216 regulation of lipid metabolic process biological_process
GO:0007517 muscle organ development biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9878 Predicted to enable chromatin binding activity. Acts upstream of or within muscle organ development and regulation of lipid metabolic process. Located in nucleus. Is expressed in several structures, including alar plate midbrain region; brain; head; immature eye; and trunk. Orthologous to human NOC3L (NOC3 like DNA replication regulator).

Ensembl:

ensembl_id ENSDARG00000002487

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009948 False 2565 nonsense_mediated_decay 0.48 21 5399680 5418340
TCONS_00009947 False 2569 mRNA 0.48 21 5399680 5418340
TCONS_00009949 True 603 lncRNA 0.39 2 5407100 5408368

Neighbor

gene id symbol gene type direction distance location
XLOC_005136 fra10ac1 coding downstream 211267 5156332 ~ 5188413 (-)
XLOC_005135 rbp4 coding downstream 279341 5115929 ~ 5120339 (-)
XLOC_005134 NA coding downstream 436438 4960951 ~ 4963242 (-)
XLOC_005133 ifnphi4 coding downstream 482711 4911907 ~ 4916969 (-)
XLOC_005132 NA coding downstream 525011 4872041 ~ 4874669 (-)
XLOC_005138 tbc1d12b coding upstream 5768 5424108 ~ 5455936 (-)
XLOC_005139 abi3b coding upstream 74464 5492804 ~ 5505205 (-)
XLOC_005140 NA coding upstream 110847 5529187 ~ 5570170 (-)
XLOC_005141 itga3b coding upstream 169007 5587347 ~ 5663189 (-)
XLOC_005142 dlx4b coding upstream 301276 5719616 ~ 5728755 (-)
XLOC_005131 NA non-coding downstream 527764 4870001 ~ 4871916 (-)
XLOC_005128 NA non-coding downstream 581820 4817289 ~ 4817860 (-)
XLOC_005126 NA non-coding downstream 716330 4677186 ~ 4683350 (-)
XLOC_005143 NA non-coding upstream 337863 5756203 ~ 5972569 (-)
XLOC_005147 NA non-coding upstream 723942 6142282 ~ 6149686 (-)
XLOC_005148 NA non-coding upstream 733491 6151831 ~ 6155959 (-)
XLOC_005151 NA non-coding upstream 888483 6306823 ~ 6493092 (-)

Expression


Co-expression Network