LOC120561001 (whrn,LOC102797690)


Basic Information

Item Value
gene id LOC120561001
gene name whrn,LOC102797690
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11901650 ~ 12061646 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU81656
CCAGTTGCGCACAGATCAGGCTCCGTCCTTGAAACCCGAAGGACTATAGAGTTTGTTCTGTGGACAGAATAAACATGAAGAAGgttgtatacattttttaaatttgcaaGGACAAAGGGAACCTTCCACGGATTTGTATTTGCTGGGTTTCACATATTACACCGGACACTATTTGAATCGCTGAAGCTCGTCCCGGTGAAGGCAGCGGTAAAGCTTTTGTTATACGTGGAATGAAAAGACAGAAGGACAAAAAGAACATATGATTTATTCAGTGCAAAACGAATGTGAGCTTTGTCTG
>XM_039803941.1
TTCTGAGAGCATCCAAAATCAGCGCTCCCTGCCAGTTGCGCACAGATCAGGCTCCGTCCTTGAAACCCGAAGGACTATAGAGTTTGTTCTGTGGACAGAATAAACATGAAGAAGgttgtatacattttttaaatttgcaaGGACAAAGGGAACCTTCCACGGATTTGTATTTGCTGGGTTTCACATATTACACCGGACACTATTTGAATCGCTGAAGCTCGTCCCGGTGAAGGCAGCGGTAAAGCTTTTGTTATACGTGGAATGAAAAGACAGAAGGACAAAAAGAACATATGATTTATTCAGTGCAAAACGAATGTGAGCTTTGTCTGGGACAATGGGTTTTTCTAGCTTGACACACCGTGTGCAGCGCACATCAGCGCCGTTATGCGCGAATAGATCATCGGTCACCTGTTGAAGTTGCCCGATGCGCGGTGAGCTATTTAACGTTTTGCTTTCAAACGGGAGGATCGACTTAAACATCGCTTTAACATATGATTGGCCCGTTCTACCGGCTCTGTATGATGCACTGATTCCCCGTTATGTTGTAGGATGAGCGCTGATCTGGAGCGCGTTTCGCTCAACACATCGGTGAACTCGGGCGGCCGTGCGCTTTCGGCAAACGTCCGGAGGCTCCACAACACTCTCAACCTGCTGCTCAGCGATCTGGAGAGAGAGCAGTTCATCCACTGTCTCAATGTGTACCACGCCAAGCGCAACGTCTTCGACCTGGTCCAAACTCTCAAAGTGATTCTCAACACGCCCAGCAAACGACAGCTGCTGCCCATGCTTCGCCTGGTCATTCCGAGGTCCGACCAGCTGCTGTTCGACCAGTACACGTCCGAGGGACTTTACCTGAAGACAGAGCTGCTCCCCAGCAACGGCAGCGCGGAGGTCTTTGGAGACGAGGGCGACTCAACTCTGCAGGAATATGTCAGTTCCATCCATGAGCAGCCCCTCACCTCCGGCTGTCCGGACGGTTTCAGCGCCGCCGCGGAGCTGTCGGCTTCCATGGCCCCGCCGTTTTTCGAGGGTCCCTTTGGAGAagtgcgcaaagtcaccctgaCGCGCTCCAGGAGCCACGAGGGTCTAGGCTTCAGCATCCGCGGGGGGTCAGAGCACGGCGTGGGGATCTACGTGTCCCTAGTGGAGCCGGGCTCGTCGGCCGAGAGAGAAGGACTGAGGGTTGGGGACCAGATAGTGACCGTGAACGACATGATGTTTGACAATGTCACTCACGTAGAAGCGGTGAAGGTACTAAAGGGATGCAAACAGATGGCTATTTCAGTGTGTTCCATGGGTCGGATCCCCGGAGGCTACATTACCAATCACGTGTACAGTTGGGTGGACCCTCAGGGCCGGAGTGTCTCCCCGCCACCCGACAGCCAAGAGGCCAACCAAAAGCAAGGACATGGCATGGAGGAGAGGACGGTAATCCTGAATATGGACGATGGTCGCTCTCTAGGCCTAATGATCAGAGGTGGTGCTGAATATGGACTAGGAATCTACATCACTGGAGTAGACCCTGGATCTGCTGCAGATGCTGGTGCACTAAAGGTGGGTGACCAGATCCTGGAATTGAACGGTCAGAGTTTTGTTACAATCTCCCATGATGAGGCAGTTCACATCCTCAAAACAGGACGGCACCTGCGGATGAAGGTGAGGGATGTGGGTCGTCTGCCTCATGCACGCACAGTGGTGGATGAAACCAAATGGATCTGCAGTCAGGCCATAGCTGAGACCAATGCTACAGCTAACACAAGTTCTTTCACCGACCCCACTGTCAATGCTGGCATCCACGTTAGTGCCAGTACCTGCAGTACAAGACCATCTTCAGCCAAAGCTACACCTATATTAGGGAAGCCAGCAGTATACAGAGGTGTGGGCCCACCAGGTGCTCAGGTGTCTCTGGATCAGCAGGCCTACATGCTTCTGACGGAGCCAGAGAGGCAGACCATGGCCTACTACCTGCAGGAATACCAGGAGGGACACATAGGAGTGGAGCCACTGGCTATGGCTCTGTTTGAGCTCTTTAACACACATGCAAAGTTGTCCATGTTGTCTGAAGTGAGGAGTCTGGTGGCTCCCCAGGACCTGGAATTGTATGACGGGCTGGTGTTGAACTGTGAAAGGGAGGCCTACCGGGCCTGGCATGGAGGCCTGGGAGTGCTGCATCCACAGGGCCACGGCAACCACATAGCCCCTGTGATCCATGATGCAGGACACACTGTCCCTGCTACAGTACATCCCTTATTTACTATACCTAAAAAGACTGACGGCTCTGTTGGTGGCTGGATCCAAAAGGACCAAGAGGAGAACACTAATGCCTTACATAAAATTGCGCTGAACGGAATGCAGGCTTCAGATGATTCTCCTTCATTCTGCAGGCCTGCCCCTCTCAAAGCTCAAAGCAGGCCATCCAGAGAGAAAGAGCTCAGCCGGAAACCTTCCGCCCGGCGCATGCAGCCTGGCTCCAGCCTGCTCTTCACAGGACCCACTCGGCTGCTTCAGGACTGCCTCCACAAGTCGCTTAAATCCCTCCCCACCACCCACCACTCCCCAGCAGCCTCTGCCCACCACACCTGCGCTGGTGCCAGCCACCACACTTCTCTCAATGCACTCCATCACACCTGCCAGAGTTCATTTCAACTCTCTGACTCTGAACACCAAAACCACCCCAACTTTGCTCATCACATTCACCACCACACCTGCCCAGGCTTCTTGCACCGCCAGGACTCCTCCAGCTCTGCTAAGCTAGATGCATCTGTCAAGCTCGCTTGCAGATCGAGCTCCTATGAGAAGTCCTCATACTTGTCAAAGTCTGTGCCATCCTCCAAAGCAGCATCTCCCATGCCATCCCCTCATCCATCACCCCATTCCTCGCCATGTCCCTCCCCCTGCCCCTCTCTTATCACAACTGCTGCTGCACCATATAGTCCTGTTCGGCCCTGCTCACCTGCCTTCCCCCAGAAAGTCATCATAACAGACATGAATCGGCTGTCTGCAGACTCCAGACCACAGCAAAGAGGGGCCACCCTGTCCCAGCTTTCAGACAGTGGCCAGACTCTGAGTGAGGACAGCGGGGTGGATATAGCCGAAGCAGGAGGACTCAGTAAAGATGGCAGCCCTCGACCCAGCAAGAACCAGCAGGGCCAATTGGAACAGCCAGGGGCCCATGCACCTCCTCCGGGGACCAGACAACAGAATGGCTCACCGGTCCCAGTGCCCACTCCTAACTTGATACGAGTGGTGAAAAATTCCAACACCCTTGGTATTGCTATAGAGGGAGGAGCCAACACACGCCAACCTTTGCCACGCATAGTCACCATTCAGAAAGGAGGCTCCGCTCATAACTGCGGTCAGCTGAAGGTGGGTCAGATCATCCTGGAGGTCAATGGCATTTCCCTGAGAGGTCGGGAGCACAAAGATGCTGCCAAGATCATAGCCGAGGCCTTCAAGACCAAAGAGAAGGACCACATTGACTTCCTGGTTGTTGATCCAGGACTATAGATCAGCACTATATTACTTGGCTGAAGAAGACACTGTTTTACTGCTTTAAAGGAACCGTATCAACTCCACATTGTCCAATAATCATGGCCCTCATTTTGATTTAAGCCAAAGGATTGGTGGAAATATATTTGCTCATTGCACTTCACAGAGCTTTAGAAAGATTTAGAAAAGGATATAACAATAATATTTGCCAAAACAATCATGTGCTTGTGTTTCATTAGTTTTCAAACCCTGAATGTTATTATATGTTTCACCAGGTGGTCTAGATTACTGTAGTACTGATAGTGTGGTTGTCAAACCAAATAATATGCCAAATGTATTGCAGTCAGTAAAGTCAGTCTTCAAGTTGTACTCCTCAAGGTAAATCAACACATTCTTACTCCCAGCCCGTCAAAAACTGACGTTTGGTCAGCTGCCTTTGTTGTTAGTTACTAATGCAACAAATGTCCGTAGCATCTCAGTCAGACACAGGGGGCTTTCAACTAATTTCAATGTAATCCCATCCGCAGCAATATTTGATGTTCTGGGTACCCCATTGGCATCATTTTTCAACACGCTAGGACGCCCTGGGTAGGGGTCTGCAGGGTAAAACCAATTAGAgttagggaaagattgtggGTGGAGTTAAAAATTAGCATTTAAGTGACAGGCAGGACACAAACCCTGGTcgcctgggtgaaagtccttttttgttttttcacttttgtttattcagggaaggttcatagagaggaagcctctc
>XM_039803942.1
TTCTGAGAGCATCCAAAATCAGCGCTCCCTGCCAGTTGCGCACAGATCAGGCTCCGTCCTTGAAACCCGAAGGACTATAGAGTTTGTTCTGTGGACAGAATAAACATGAAGAAGgttgtatacattttttaaatttgcaaGGACAAAGGGAACCTTCCACGGATTTGTATTTGCTGGGTTTCACATATTACACCGGACACTATTTGAATCGCTGAAGCTCGTCCCGGTGAAGGCAGCGGTAAAGCTTTTGTTATACGTGGAATGAAAAGACAGAAGGACAAAAAGAACATATGATTTATTCAGTGCAAAACGAATGTGAGCTTTGTCTGGGACAATGGGTTTTTCTAGCTTGACACACCGTGTGCAGCGCACATCAGCGCCGTTATGCGCGAATAGATCATCGGTCACCTGTTGAAGTTGCCCGATGCGCGGTGAGCTATTTAACGTTTTGCTTTCAAACGGGAGGATCGACTTAAACATCGCTTTAACATATGATTGGCCCGTTCTACCGGCTCTGTATGATGCACTGATTCCCCGTTATGTTGTAGGATGAGCGCTGATCTGGAGCGCGTTTCGCTCAACACATCGGTGAACTCGGGCGGCCGTGCGCTTTCGGCAAACGTCCGGAGGCTCCACAACACTCTCAACCTGCTGCTCAGCGATCTGGAGAGAGAGCAGTTCATCCACTGTCTCAATGTGTACCACGCCAAGCGCAACGTCTTCGACCTGGTCCAAACTCTCAAAGTGATTCTCAACACGCCCAGCAAACGACAGCTGCTGCCCATGCTTCGCCTGGTCATTCCGAGGTCCGACCAGCTGCTGTTCGACCAGTACACGTCCGAGGGACTTTACCTGAAGACAGAGCTGCTCCCCAGCAACGGCAGCGCGGAGGTCTTTGGAGACGAGGGCGACTCAACTCTGCAGGAATATGTCAGTTCCATCCATGAGCAGCCCCTCACCTCCGGCTGTCCGGACGGTTTCAGCGCCGCCGCGGAGCTGTCGGCTTCCATGGCCCCGCCGTTTTTCGAGGGTCCCTTTGGAGAagtgcgcaaagtcaccctgaCGCGCTCCAGGAGCCACGAGGGTCTAGGCTTCAGCATCCGCGGGGGGTCAGAGCACGGCGTGGGGATCTACGTGTCCCTAGTGGAGCCGGGCTCGTCGGCCGAGAGAGAAGGACTGAGGGTTGGGGACCAGATAGTGACCGTGAACGACATGATGTTTGACAATGTCACTCACGTAGAAGCGGTGAAGGTACTAAAGGGATGCAAACAGATGGCTATTTCAGTGTGTTCCATGGGTCGGATCCCCGGAGGCTACATTACCAATCACGTGTACAGTTGGGTGGACCCTCAGGGCCGGAGTGTCTCCCCGCCACCCGACAGCCAAGAGGCCAACCAAAAGCAAGGACATGGCATGGAGGAGAGGACGGTAATCCTGAATATGGACGATGGTCGCTCTCTAGGCCTAATGATCAGAGGTGGTGCTGAATATGGACTAGGAATCTACATCACTGGAGTAGACCCTGGATCTGCTGCAGATGCTGGTGCACTAAAGGTGGGTGACCAGATCCTGGAATTGAACGGTCAGAGTTTTGTTACAATCTCCCATGATGAGGCAGTTCACATCCTCAAAACAGGACGGCACCTGCGGATGAAGGTGAGGGATGTGGGTCGTCTGCCTCATGCACGCACAGTGGTGGATGAAACCAAATGGATCTGCAGTCAGGCCATAGCTGAGACCAATGCTACAGCTAACACAAGTTCTTTCACCGACCCCACTGTCAATGCTGGCATCCACGTTAGTGCCAGTACCTGCAGTACAAGACCATCTTCAGCCAAAGCTACACCTATATTAGGGAAGCCAGCAGTATACAGAGGTGTGGGCCCACCAGGTGCTCAGGTGTCTCTGGATCAGCAGGCCTACATGCTTCTGACGGAGCCAGAGAGGCAGACCATGGCCTACTACCTGCAGGAATACCAGGAGGGACACATAGGAGTGGAGCCACTGGCTATGGCTCTGTTTGAGCTCTTTAACACACATGCAAAGTTGTCCATGTTGTCTGAAGTGAGGAGTCTGGTGGCTCCCCAGGACCTGGAATTGTATGACGGGCTGGTGTTGAACTGTGAAAGGGAGGCCTACCGGGCCTGGCATGGAGGCCTGGGAGTGCTGCATCCACAGGGCCACGGCAACCACATAGCCCCTGTGATCCATGATGCAGGACACACTGTCCCTGCTACAGTACATCCCTTATTTACTATACCTAAAAAGACTGACGGCTCTGTTGGTGGCTGGATCCAAAAGGACCAAGAGGAGAACACTAATGCCTTACATAAAATTGCGCTGAACGGAATGCAGGCTTCAGATGATTCTCCTTCATTCTGCAGGCCTGCCCCTCTCAAAGCTCAAAGCAGGCCATCCAGAGAGAAAGAGCTCAGCCGGAAACCTTCCGCCCGGCGCATGCAGCCTGGCTCCAGCCTGCTCTTCACAGGACCCACTCGGCTGCTTCAGGACTGCCTCCACAAGTCGCTTAAATCCCTCCCCACCACCCACCACTCCCCAGCAGCCTCTGCCCACCACACCTGCGCTGGTGCCAGCCACCACACTTCTCTCAATGCACTCCATCACACCTGCCAGAGTTCATTTCAACTCTCTGACTCTGAACACCAAAACCACCCCAACTTTGCTCATCACATTCACCACCACACCTGCCCAGGCTTCTTGCACCGCCAGGACTCCTCCAGCTCTGCTAAGCTAGATGCATCTGTCAAGCTCGCTTGCAGATCGAGCTCCTATGAGAAGTCCTCATACTTGTCAAAGTCTGTGCCATCCTCCAAAGCAGCATCTCCCATGCCATCCCCTCATCCATCACCCCATTCCTCGCCATGTCCCTCCCCCTGCCCCTCTCTTATCACAACTGCTGCTGCACCATATAGTCCTGTTCGGCCCTGCTCACCTGCCTTCCCCCAGAAAGTCATCATAACAGACATGAATCGGCTGTCTGCAGACTCCAGACCACAGCAAAGAGGGGCCACCCTGTCCCAGCTTTCAGACAGTGGCCAGACTCTGAGTGAGGACAGCGGGGTGGATATAGCCGAAGCAGGAGGACTCAGTAAAGATGGCAGCCCTCGACCCAGCAAGAACCAGCAGGGCCAATTGGAACAGCCAGGGGCCCATGCACCTCCTCCGGGGACCAGACAAAATGGCTCACCGGTCCCAGTGCCCACTCCTAACTTGATACGAGTGGTGAAAAATTCCAACACCCTTGGTATTGCTATAGAGGGAGGAGCCAACACACGCCAACCTTTGCCACGCATAGTCACCATTCAGAAAGGAGGCTCCGCTCATAACTGCGGTCAGCTGAAGGTGGGTCAGATCATCCTGGAGGTCAATGGCATTTCCCTGAGAGGTCGGGAGCACAAAGATGCTGCCAAGATCATAGCCGAGGCCTTCAAGACCAAAGAGAAGGACCACATTGACTTCCTGGTTGTTGATCCAGGACTATAGATCAGCACTATATTACTTGGCTGAAGAAGACACTGTTTTACTGCTTTAAAGGAACCGTATCAACTCCACATTGTCCAATAATCATGGCCCTCATTTTGATTTAAGCCAAAGGATTGGTGGAAATATATTTGCTCATTGCACTTCACAGAGCTTTAGAAAGATTTAGAAAAGGATATAACAATAATATTTGCCAAAACAATCATGTGCTTGTGTTTCATTAGTTTTCAAACCCTGAATGTTATTATATGTTTCACCAGGTGGTCTAGATTACTGTAGTACTGATAGTGTGGTTGTCAAACCAAATAATATGCCAAATGTATTGCAGTCAGTAAAGTCAGTCTTCAAGTTGTACTCCTCAAGGTAAATCAACACATTCTTACTCCCAGCCCGTCAAAAACTGACGTTTGGTCAGCTGCCTTTGTTGTTAGTTACTAATGCAACAAATGTCCGTAGCATCTCAGTCAGACACAGGGGGCTTTCAACTAATTTCAATGTAATCCCATCCGCAGCAATATTTGATGTTCTGGGTACCCCATTGGCATCATTTTTCAACACGCTAGGACGCCCTGGGTAGGGGTCTGCAGGGTAAAACCAATTAGAgttagggaaagattgtggGTGGAGTTAAAAATTAGCATTTAAGTGACAGGCAGGACACAAACCCTGGTcgcctgggtgaaagtccttttttgttttttcacttttgtttattcagggaaggttcatagagaggaagcctctc

Function

symbol description
whrn Predicted to enable identical protein binding activity. Involved in retina homeostasis; sensory perception of light stimulus; and sensory perception of sound. Located in cytoplasm. Implicated in Usher syndrome type 2D; autosomal recessive nonsyndromic deafness 31; and sensorineural hearing loss.

NR:

description
PREDICTED: whirlin-like isoform X1

GO: NA

KEGG:

id description
K21879 WHRN, USH2D; whirlin

RNA

RNA id representative length rna type GC content exon number start site end site
TU81656 False 298 lncRNA 0.42 1 12061318 12061615
XM_039803941.1 True 4249 mRNA 0.51 12 11901650 12061646
XM_039803942.1 False 4246 mRNA 0.51 12 11901650 12061646

Neighbor

gene id symbol gene type direction distance location
niban2b LOC106585213,LOC107560233,LOC107715759 coding downstream 185702 11641802 ~ 11715948 (-)
npdc1b npdc1 coding downstream 262212 11608619 ~ 11639438 (-)
LOC120561251 NA coding downstream 546744 11351854 ~ 11354906 (-)
sdf2l1 sdf2l1,LOC106531766,LOC106570867 coding downstream 732323 11160449 ~ 11169327 (-)
top3b top3b coding downstream 809688 10986105 ~ 11091962 (-)
noxa1 LOC103359690 coding upstream 19853 12081499 ~ 12116241 (-)
man1b1b LOC103359688 coding upstream 96987 12158633 ~ 12220357 (-)
LOC120560512 NA coding upstream 191521 12253167 ~ 12293788 (-)
ehmt1a NA coding upstream 495921 12557567 ~ 12600992 (-)
arrdc1a LOC103353853,LOC104923796 coding upstream 548770 12610416 ~ 12635123 (-)
G60904 NA non-coding downstream 1986 11898266 ~ 11899664 (-)
G60905 NA non-coding downstream 3557 11897317 ~ 11898093 (-)
G60867 NA non-coding downstream 84948 11816401 ~ 11816702 (-)
G60866 NA non-coding downstream 91010 11810310 ~ 11810640 (-)
G60862 LOC103353854,LOC100712335 non-coding downstream 111312 11779939 ~ 11790338 (-)
G60955 NA non-coding upstream 82410 12144056 ~ 12157352 (-)
G61051 NA non-coding upstream 542159 12603805 ~ 12604426 (-)
G61083 NA non-coding upstream 582400 12644046 ~ 12644532 (-)
G61084 NA non-coding upstream 583082 12644728 ~ 12644952 (-)
G61085 NA non-coding upstream 584720 12646366 ~ 12646567 (-)
abca2 abca2 other downstream 307990 11285385 ~ 11593660 (-)
G60715 NA other downstream 711909 11189142 ~ 11189741 (-)
unc5db unc5d other downstream 1382683 10122152 ~ 10518967 (-)
tacr1a tacr1,LOC102799894,LOC100703444,LOC102196095 other downstream 3174207 8643403 ~ 8727443 (-)
G60145 NA other downstream 3499084 8401022 ~ 8402566 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other upstream 232061 12293707 ~ 12555285 (-)
G61264 NA other upstream 1527393 13589039 ~ 13589332 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 2266505 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 2877329 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 2882850 14944496 ~ 14944568 (-)

Expression


Co-expression Network