LOC120561319


Basic Information

Item Value
gene id LOC120561319
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13812112 ~ 13825234 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82107
TGAAAATGTGGAGCAGTTCAATAACTTGCGTCGTAGCCAGGctcttgtgtgtgcatgtgtctgtgtgtgtttgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtagggggttGCATGCATgtgggaatgtgtgtgtttggtttacCTATTTAGAAGCATggacggagagagagaagagggagggcaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaacgagagagatttgtAAAGCACTTGTATTTGCAAACTGCTGGCTGAGTTCCCACTagaggcagagaaatcagactgaaagtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgcgtgcgtgtgtatcaGGACTGAGAcatagagagacaggcagacagacacagagaggaacCGTTCCACCCCGTTCAGCCAGCAACTCCTCGGCCCGTCTACATGAGCTTTCTTCCCGAATATGGAGGCTTTTTTTTCGCTCTCttgatttttgttttcctaCCCTCCAGTCACCACAGATTTACGCTGCCGAACTTTTGGCCACATTTTTAGGTAAGTATTTAAACTGTTCGTCCTTCCCCGAGTCTTTTCATTTCCAGCTTCACTTGATTAAAAACACTTTTCCCACTTCTTTTACACTAATGcacgacttgtttaaaaaaagaactacATTCAATGATTTCATTGAAACACTACTCCGTTTCTACAAAAGCTAATGCATGGAAAGTTTGGGATTTTCACTTATAGGCAGGCACAaaagacaatgtttttttttatgtgtaggAGCATTTGTGCTTGGTACAGTTGGTCTAAAACGGTGTTATGCGTTATGTGTGAAACCAGACAGCGGCTCTGTGTGTGGGAGAGTTTTGAAGAGGATGTATGTGCGAATgagagggaggacagagagatTGTGTGCGCCGGACAAAGTGTGCCAAgtgtgaaaagtgtgtgtgtgtgtgtgtctgcgtgtgctCGTGTGACTGTCTGCGTATGTGTGCgtgggtctttttttttttttctttcctaaaGCTTGCTCTGTGGGAATGCGGAATGCGGAGCGCGGTAGCCAGTAGCGATGTTTGACTGGGAGGAACTGAGCCAGACAGTAGACAAAAGCAAGCGGGGCTGTCCAGACAGGGCAGGTCAGCCATTAGAGGCTGCAGCCGAGGGACAGGTCAGCCAGCTGCTGCTCCGCTCCACGAGGGGAGGGCATGCCCCGCCTTTAGCGTCAGGCTGGGGGGGGTTAGAGTTGCGATCGAGGTTAGGGGTGACCATGCTTCACTTCACGACTTGCCTCTCAAAGTGCTCACCTTGCACGCCCTTCCCCACTTTGAGAAAAAAAGGCCGGCGTGCTTTGCAGCTTGAAAGGACTCGAGGCAGGAGTTGAATGCACAAAGAAtttagtccccccccccccctgcatcATTGGGGAAACCTTTCAGCACTCTTTCAGTTTGTGTAAAAATGTTGTCTAGTTAAAGTAGCGATGGTTCCGGAATCGAAAATTCAAAATAAGCTTGCCGTCAGTGACTTGCTAGAGTTAACCCAAaatactaaagaaaaaaaaaaaaaaaaaaaaaaacaggtgaaGGGAGGAAAATGCAGCAAAGGAAGTGGAAATGTAGGAGGCGGTTAAATATAGATGACGCTAAAAGAGGAAGAATCGCAGAGACTGTCATTTtcacagggtttttttttttcctctattCCTTTTTTTCGTTggtcccccccccacacaccccgCCGCCACGCGTGCGTGGGGGGTCCCTGGGTTTGGAATGTATGTAGTGACAGGAAATACTGGCCGCCCCTATACTTTTTTAGCTTGTCCCGGtctgcttttgtccaaagctcTTAATCCACCGCAAAAGCTGAGTGCGTGAAGGAGCAGCAACAACCAAGAAAAACACGGCCCCGGAATCAGAATACAGTACGCGGCCGCCGCCGCGGCTGCTGTAGTcaccaaaaaaacacacacacatttgcagaaGGCACAAAAGGCTTAACATGAGGATGAACaaacaacacacgcacacacacacacacatacatgagtCTGGATTGATATCTGAGTGCTGGtgatgagggggggggggaggagcaGCTCTTTGAAGCTACACGCAGCTGCGGAACTGAAAAACAAGTGTCATCACTTAAGGTAACGAATTCTGAttaaattaacaaaaacaacagtccTGGCTGTGGTCtgcaaaacattcatttaaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgcttTTGAGGCTCTCAGACTGAAAGCAGAGTACAACTCATTCTCTGAAATGCCTGTACATGTAGAGTCTTGTTACCCAGATACACATCTCAGCCCTCATCACCGGCAACGGCTGGCAACTGAAGTCATACACTCCATAACCCCAAATCAgcagagcctttttttttttgtgacgcCGTCACTGAAAACCCTTCTAAACTATGTACTACatacagcctttaaaaacaaGTGCCGTGTCTCCAGatgagaacatttttttttttaaatctgacaAAATGAGTGACAGCACAGGCTTAAGGACTACAGCTAGTCAAAGTCCTTTGTTGACAAAATGATAACACTCGGGACTCTGTGGAGGTGAACTTGAGggctttgattttattttatttttttcttccccccccctttctccaTCCCCCAAAAATTAGCTATGCAGCATTTTGGAAACCTTGACGGGTTTTTGTGCAGGCCGGCGGCACTTGTTGATCGTCA
>XR_005639584.1
tttgtAAAGCACTTGTATTTGCAAACTGCTGGCTGAGTTCCCACTagaggcagagaaatcagactgaaagtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgcgtgcgtgtgtatcaGGACTGAGAcatagagagacaggcagacagacacagagaggaacCGTTCCACCCCGTTCAGCCAGCAACTCCTCGGCCCGTCTACATGAGCTTTCTTCCCGAATATGGAGGCTTTTTTTTCGCTCTCttgatttttgttttcctaCCCTCCAGTCACCACAGATTTACGCTGCCGAACTTTTGGCCACATTTTTAGgtaaaaaaaggagcacaggCTCGGCGGAGACAGATGAGAGCTTTGTTAGTAGTTTTGCAGAGGGtgaggatgatgatgacgacgatGATGACGACGGCGTTCGCCGCTATTTAAGGAAACCTTTGCATCGCCGCGTCTCCACACCCCTGCTGGCTTCTCTTCAAACGTTATTTGAACCTCCACGTCGACATGGGTGGTAACACGCCTTGGCATGGTGTTGCTCCGCAAGGGCCAAGAAAAACACggaagcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaattgtgaTACTCACAGCACGCAGGTATATCTAGCTCGTCTTTCTGGGTGACAGCATTACAAAGTTAGCATTTTCCCATCGTTTTAACCATCTGTTGACAGCTGAGATGGACATATAGAACACTTGACAGGTCTGACATCATAGCAggcttgcaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82107 True 2837 lncRNA 0.47 3 13812112 13815032
XR_005639584.1 False 849 lncRNA 0.48 2 13812459 13825234

Neighbor

gene id symbol gene type direction distance location
adgrd2 NA coding upstream 165762 13567559 ~ 13646350 (+)
lhx2b lhx2 coding upstream 445902 13349141 ~ 13366210 (+)
bcl2l16 LOC103353844,LOC104923787,LOC108246437,LOC104963815 coding upstream 879113 12909814 ~ 12932999 (+)
si:dkey-90l8.3 LOC104923788,LOC103353846 coding upstream 946860 12860590 ~ 12865252 (+)
ccn1l2 LOC104943830 coding upstream 974205 12831272 ~ 12837907 (+)
LOC120561313 olfml2a coding downstream 44448 13869682 ~ 13902649 (+)
LOC120559997 NA coding downstream 119804 13945038 ~ 13961157 (+)
atad1a atad1,LOC101479261,LOC100705680,LOC104934768,LOC102292399,LOC106527948 coding downstream 160997 13986231 ~ 14000271 (+)
piwil2 piwil2 coding downstream 322336 14147570 ~ 14188917 (+)
LOC120560074 NA coding downstream 373521 14198755 ~ 14211704 (+)
G61259 NA non-coding upstream 125200 13686631 ~ 13686912 (+)
G61258 NA non-coding upstream 127906 13683996 ~ 13684206 (+)
G61255 nr5a1,LOC102788368 non-coding upstream 131247 13680213 ~ 13680865 (+)
G61254 NA non-coding upstream 132519 13679267 ~ 13679593 (+)
G61244 nr5a1,LOC101062876 non-coding upstream 160648 13647297 ~ 13651464 (+)
LOC120561317 NA non-coding downstream 78129 13903363 ~ 13904658 (+)
LOC120561318 NA non-coding downstream 79459 13904693 ~ 13905340 (+)
G61332 NA non-coding downstream 235688 14060922 ~ 14061171 (+)
G61376 NA non-coding downstream 436921 14262155 ~ 14262869 (+)
G61389 crybb3,LOC103469711 non-coding downstream 500156 14325390 ~ 14327533 (+)
LOC120560904 crb2,LOC103353841,LOC106959700,LOC106929552 other upstream 631621 13132098 ~ 13180491 (+)
G61139 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 other upstream 888276 12921147 ~ 12923836 (+)
G60897 NA other upstream 1885511 11926183 ~ 11926601 (+)
LOC120561144 NA other upstream 3059672 10748116 ~ 10752440 (+)
LOC120561142 NA other upstream 3065159 10726438 ~ 10746953 (+)
G61337 LOC100705941,LOC102292089,LOC108234925,LOC106529513,LOC104934772,LOC103365846 other downstream 282249 14107483 ~ 14109546 (+)
G61338 htr7,LOC104934772,LOC101065316 other downstream 316208 14141442 ~ 14142050 (+)
LOC120560400 tmem150a,LOC106585116 other downstream 427022 14252256 ~ 14281771 (+)
G61383 NA other downstream 458183 14283417 ~ 14283871 (+)
G61390 crybb2,LOC108234953,LOC100703162 other downstream 492305 14317539 ~ 14319506 (+)

Expression


Co-expression Network