G61390 (crybb2,LOC108234953,LOC100703162)


Basic Information

Item Value
gene id G61390
gene name crybb2,LOC108234953,LOC100703162
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14317539 ~ 14319506 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82226
TGAGAAGTCTGGTAAAGAACTTAGGCAGAGGGTGAAACAGGTAAAACACACAACTAAGTCAAATGTAAGCCATAAGgatttattagtttgcttcaAAGAATGTCACTACTGCAGCAGCTGCAATAGATATCAAAATGCAGTATGGTGTAATGGAAGGACAAAGGGGTTGGTGCTGGAAGGGAGCAAGGCGTGGCGAGGTCAGGGTTCATGACAGGAAAGAGTCACAAGCTTAGTTGACGGGGTGAAAAGTACCCCTCTGATGCCACTGCATGTCTCTGATGCGCCGAACCGACTGGATCTGAGGAATCTGGGCTCCGAACTCAGTGCTGTCCTTATACTCCCCCTTTTCAAACAGGTACTGATAGCCTCTGTAGCCTGGATACTGATAGCCCACCCACGTGCCACTCTGAACCCGAACAGAGGAGACCTTCTCCTGGTAGCCGTGCGCATGAAAGCTGGGGACATCGTCATCTATGATTTCTATCTTCTTCCCCGCGAAGCTGGGGTTTTCGTAAAGGACAATCTTGTGCTCCTGGCTGTCCACTTTAATCGGGCGGAATGCAACAATGGTGTCACTACGCCTGCTGTTGGTCCAGGAATCCCAGCGAGGATACTCCCCCTTCTCAAACACATACTGCTCCCCCTTACAGTTGTTCTGCTCGTATCCCACCCATGGTCCACACAGCACCAGTATGGAGCCCACTTTCTCCACGCCTGCTTCCTGGAGGTTGTTGCAGGGACCAGTCAGCTCATGGCAGCGTCCCTGGAAGTTTTCCTGCTCATAGATAACCAGCTTAAATGCACTGGtgcctggctgctgctgcttggaTGCAGGTTTCAGGTGGTCTGTGGCCATAGTGAATGGATCGGCAAAGATGAAACAGTACCTGTCTGTGCCAGTGTGTTTGTGATGGCACGATCAGCCCAATATATACGGGACGCCCAGGGGTGGAAAC
>TU82227
TGAGAAGTCTGGTAAAGAACTTAGGCAGAGGGTGAAACAGGTAAAACACACAACTAAGTCAAATGTAAGCCATAAGgatttattagtttgcttcaAAGAATGTCACTACTGCAGCAGCTGCAATAGATATCAAAATGCAGTATGGTGTAATGGAAGGACAAAGGGGTTGGTGCTGGAAGGGAGCAAGGCGTGGCGAGGTCAGGGTTCATGACAGGAAAGAGTCACAAGCTTAGTTGACGGGGTGAAAAGTACCCCTCTGATGCCACTGCATGTCTCTGATGCGCCGAACCGACTGGATCTGAGGAATCTGGGCTCCGAACTCAGTGCTGTCCTTATACTCCCCCTTTTCAAACAGGTACTGATAGCCTCTGTAGCCTGGATACTGATAGCCCACCCACGTGCCACTCTGAACCCGAACAGAGGAGACCTTCTCCTGGTAGCCGTGCGCATGAAAGCTGGGGACATCGTCATCTATGATTTCTATCTTCTTCCCCGCGAAGCTGGGGTTTTCGTAAAGGACAATCTTGTGCTCCTGGCTGTCCACTTTAATCGGGCGGAATGCAACAATGGTGTCACTACGCCTGCTGTTGGTCCAGGAATCCCAGCGAGGATACTCCCCCTTCTCAAACACATACTGCTCCCCCTTACAGTTGTTCTGCTCGTATCCCACCCATGGTCCACACAGCACCAGTATGGAGCCCACTTTCTCCACGCCTGCTTCCTGGAGGTTGTTGCAGGGACCAGTCAGCTCATGGCAGCGTCCCTGGAAGTTTTCCTGCTCATAGATAACCAGCTTAAATGCACTGGtgcctggctgctgctgcttggaTGCAGGTTTCAGGTGGTCTGTGGCCATAGTGAATGGATCGGCAAAGATGAAACTGTCTGTGCCAGTGTGTTTGTGATGGCACGATCAGCCCAATATATACGGGACGCCCAGGGGTGGAAAC

Function

symbol description
crybb2 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye and lens. Human ortholog(s) of this gene implicated in cataract and cataract 3 multiple types. Orthologous to human CRYBB2 (crystallin beta B2).

NR:

description
PREDICTED: beta-crystallin B2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82226 True 956 TUCP 0.51 6 14317539 14319506
TU82227 False 950 TUCP 0.51 6 14317539 14319506

Neighbor

gene id symbol gene type direction distance location
idua idua coding upstream 71234 14234278 ~ 14246305 (+)
LOC120560659 LOC103369208,LOC102291259,LOC102215744,LOC101478239 coding upstream 84151 14212239 ~ 14233388 (+)
LOC120560074 NA coding upstream 105835 14198755 ~ 14211704 (+)
piwil2 piwil2 coding upstream 128622 14147570 ~ 14188917 (+)
atad1a atad1,LOC101479261,LOC100705680,LOC104934768,LOC102292399,LOC106527948 coding upstream 317268 13986231 ~ 14000271 (+)
unc119.1 unc119b coding downstream 57748 14377254 ~ 14383227 (+)
msi1b msi1,LOC100704609 coding downstream 85634 14405140 ~ 14429432 (+)
prkab1b LOC103353610,LOC101165238 coding downstream 118319 14437825 ~ 14445152 (+)
pla2g1b NA coding downstream 131345 14450851 ~ 14454246 (+)
cfap77 NA coding downstream 229173 14548679 ~ 14555480 (+)
G61376 NA non-coding upstream 54670 14262155 ~ 14262869 (+)
G61332 NA non-coding upstream 256368 14060922 ~ 14061171 (+)
LOC120561318 NA non-coding upstream 412199 13904693 ~ 13905340 (+)
LOC120561317 NA non-coding upstream 412881 13903363 ~ 13904658 (+)
LOC120561319 NA non-coding upstream 492305 13812112 ~ 13825234 (+)
G61389 crybb3,LOC103469711 non-coding downstream 5884 14325390 ~ 14327533 (+)
G61391 NA non-coding downstream 8674 14328180 ~ 14329747 (+)
G61431 rnf10,LOC102784202 non-coding downstream 45726 14365232 ~ 14368488 (+)
G61448 NA non-coding downstream 81725 14401231 ~ 14401881 (+)
G61449 NA non-coding downstream 82549 14402055 ~ 14402762 (+)
G61383 NA other upstream 33668 14283417 ~ 14283871 (+)
LOC120560400 tmem150a,LOC106585116 other upstream 35768 14252256 ~ 14281771 (+)
G61338 htr7,LOC104934772,LOC101065316 other upstream 175489 14141442 ~ 14142050 (+)
G61337 LOC100705941,LOC102292089,LOC108234925,LOC106529513,LOC104934772,LOC103365846 other upstream 207993 14107483 ~ 14109546 (+)
LOC120560904 crb2,LOC103353841,LOC106959700,LOC106929552 other upstream 1137048 13132098 ~ 13180491 (+)
c6h12orf43 NA other downstream 69965 14389471 ~ 14392583 (+)
LOC120560925 NA other downstream 111824 14431330 ~ 14434597 (+)
G61514 surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 380019 14699525 ~ 14794602 (+)
LOC120561401 NA other downstream 435944 14755450 ~ 14762549 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 455007 14774513 ~ 14795943 (+)

Expression


Co-expression Network