LOC120560401 (atp5ib,atp5i,LOC106580450)


Basic Information

Item Value
gene id LOC120560401
gene name atp5ib,atp5i,LOC106580450
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14252253 ~ 14254503 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82265
CATATCAGCTGCAGTAAATCCTCAAAGAAGAAGTATCTTGTCCCACAGTCCTCTCTCTGGTGGTAAAGTGACctctggctgttagcctgctgTAAAACTATGGCGCCTCCAGTTGCAGTGTCGCCTTTGATTAAGACCGCAAGGTATTCAGCTCTGATTGCTGGCATCATCTATGGCAAAAAAAGATATGAAAACCTGAAGCCAATTGCAGCTGAAGAGAGGAGgattgaggaggaggagaaaaagattcGTGAAGAGCAGGAGCGCATTGCCAAGGCGCTCGCAGAAGCAAGTGAAGATACTATTCTGAAGTAAAGCTGGTGTGCCGTCTGAGGATGTCCCTGTGCAATTCCCAACATCTCCTTCCTTTTTTCCTGGAGTAACAATGGCAAAGTCGGGTCCCAAGCAGTCAAACACTCCCGCGTTGTGGACCTACTCACTGTTACCTTGTATGATACAACAACTCTCTGGCATGCCAGATACAGTGATTATGAGTTAGTTACATGATCTAAAATAAAGCTCTTGGACTCAGCATTGTAATACTGCAAATGCAGCCGCATAAGTTATAACGTTCATGTTTGTAATGAAATGTCATAAATACAAAGGATACATGATCA
>XR_005639479.1
GATGGCAGTATTTCACCAATGAGCATATCAGCTGCAGTAAATCCTCAAAGAAGAAGTATCTTGTCCCACAGTCCTCTCTCTGGTGGTAAAGTGACctctggctgttagcctgctgTAAAACTATGGCGCCTCCAGTTGCAGTGTCGCCTTTGATTAAGACCGCAAGGTATTCAGCTCTGATTGCTGGCATCATCTATGGCAAAAAAAGATATGAAAACCTGAAGCCAATTGCAGCTGAAGAGAGGAGgattgaggaggaggagaaaaagattcGTGAAGAGCAGGAGCGCATTGCCAAGGCGCTCGCAGAAGCAAGTGAAGATACTATTCTGAAGTAAAGCTGGTGTGCCGTCTGAGGATGTCCCTGTGCAATTCCCAACATCTCCTTCCTTTTTTCCTGGAGTAACAATGGCAAAGTCGGGTCCCAAGCAGTCAAACACTCCCGCGTTGTGGACCTACTCACTGTTACCTTGTATGATACAACAACTCTCTGGCATGCCAGATACAGTGATTATGAGTTAGTTACATGATCTAAAATAAAGCTCTTGGACTCAGCATTGTAATACTGCAAATGCAGCCGCATAAGTTATAACGTTCATGTTTGTAATGAAATGTCATAAATACAAAGGATACATGAT

Function

symbol description
atp5i F-type H+-transporting ATPase subunit e

NR:

description
ATP synthase subunit e, mitochondrial

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82265 False 617 lncRNA 0.44 4 14252253 14254480
XR_005639479.1 True 638 lncRNA 0.44 4 14252255 14254503

Neighbor

gene id symbol gene type direction distance location
LOC120560956 LOC103141353,LOC103469718,LOC100701549,LOC106929229 coding downstream 3442 14246483 ~ 14248811 (-)
htr7c htr7,LOC104934772,LOC100705941,LOC102292089 coding downstream 109995 14107403 ~ 14142258 (-)
LOC120559998 NA coding downstream 280117 13963143 ~ 13972136 (-)
nr6a1a nr6a1 coding downstream 387813 13740353 ~ 13864440 (-)
LOC120561314 nr5a1,sf-1 coding downstream 565347 13649892 ~ 13686906 (-)
LOC120560399 LOC103369226,LOC100702093 coding upstream 1194 14255697 ~ 14260239 (-)
LOC120560975 pxn,LOC102314602,LOC102784766,LOC102212913,LOC101475765 coding upstream 34499 14289002 ~ 14312345 (-)
ctu1 ctu1 coding upstream 60091 14314594 ~ 14317390 (-)
crybb2 crybb2,LOC108234953,LOC100703162 coding upstream 63094 14317597 ~ 14319518 (-)
LOC120561371 crybb3,LOC103469711,LOC102784487 coding upstream 70427 14324930 ~ 14327512 (-)
G61404 tnks non-coding downstream 18815 14219347 ~ 14233438 (-)
G61359 rtili,piwil2 non-coding downstream 74083 14177323 ~ 14178170 (-)
G61335 NA non-coding downstream 161503 14090475 ~ 14090750 (-)
G61334 NA non-coding downstream 170698 14081327 ~ 14081555 (-)
G61328 NA non-coding downstream 238691 14013336 ~ 14013562 (-)
G61422 NA non-coding upstream 27348 14281851 ~ 14282348 (-)
G61423 NA non-coding upstream 29672 14284175 ~ 14285887 (-)
G61425 NA non-coding upstream 59092 14313595 ~ 14313932 (-)
G61559 NA non-coding upstream 133020 14387523 ~ 14387739 (-)
G61564 msi1,LOC102299939,LOC108239862,LOC107687968,LOC107550984,LOC107712472 non-coding upstream 156894 14411397 ~ 14418905 (-)
G61264 NA other downstream 662921 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1696968 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 2190607 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2658593 11285385 ~ 11593660 (-)
G60715 NA other downstream 3062512 11189142 ~ 11189741 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 73648 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 684472 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 689993 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 694256 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 696999 14951502 ~ 14951583 (-)

Expression


Co-expression Network