G61431 (rnf10,LOC102784202)


Basic Information

Item Value
gene id G61431
gene name rnf10,LOC102784202
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14365232 ~ 14368488 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82286
ATAATTGTTTATTCATTTCCATTCTTACACTTGCTCAAAATGTTAAGGTGAATTAAAGAAccctaaacaaaacaaatttccaaTCCACTTCAGGTTTCAAAGCCTTCTTTAAATGTCAGCAATTCTCTAATTTCACACATTTTCAACACTGAAATTAATCTGTGGGAGTAATGTTAAAAGTTAGTAAACCTTTTACAACAGAAGATGACAGGAGAAATGAGAAGAAAAGTGCGTACTTATGGTTTAATCACGCAGAATACACTGGAGTTCTGTTGAACCAGAAGACCTAATCTCTTTAATACAATACTGTGTTTTCACTTCCTCATAATGATATTATATGTATTCATGTTGTTACAAAATACCATGGCATTGATATCTATCCTAAAAATCTATCCTCTTGAAAAGGCTGATCAAGCTCAAACTAGCCCAAATGTGATAAAACACTGAAGTGTATTGGTCTCCATCTATTCTAAGCTGAAATCACACATTGATGTCTGAGTGCTGAGCATCAtggaaaagatttaaaaaaggtgCAACTTACCTGCAGCTGGCTGACTGCAACTCTAATATAAAGCACCCAGAGTTATCTTATCAATATTACTCAGGGATCCTAGATGCTCAGGTTCAACTTCAGGAAAGTTGGACATCATACAGCAAACCACTGTGATACAAGTCAGGTATCTGGAAGCCATGAAAAGCCTAAAGCATACATAATGAGAGCCCCACAGGTTGTTATATCCCTTGCTTTACTTCTCAATTAAAATGTTACCAATATGGCTTTCAGTGTGACTTCAGGAGGTGGCTGCAAAGCGTCGACCTAGTtgtacaacaaaaaatgtatgtacatTTAATGTAAATTAAACAGATGGCATGTCAACCAAAAATGGATCAAGCCCATAGAACTATGACTAAAGCGGCATGAACTATGGCTACAtactaaaaccttttttttttcccccatagCTTATAGATCTAAGAAAGATCTGCATGGAAGTAAAAACACAAGCAGTGGGAAGATCAACTCAAAGAAACTGAATATGAATAAATGAACTTCAGTGTTGTCTACTTGGTGTGAACCATGGATGTGCTGAACAgaagtttttgctttttcttcttcttctttcctcctttctcATCTGGGTCAACCACAGGTTGCGGAGGAGCAGCAGCTGCGCCATTGTCCAGCTGCAGAAGTGCCTTCTCAAAGGCCTGGCTGAAGGAGTTCTGGAAGCTGGGCACGGGGACGCGGTCCGACCCGTCGCTCTCTCCATCGCTGTCAGCTGCTGGGGGAGCTAGCAGTTGATCTTTCTTTGGAGGGATCCTGGGCCCAGCATCACCTCTGGCCTTCCCATCTCTTAGCATCTGTGCAAAGGACATACAATGGGAGTCATCCTCCACACTACCCACAATGGGTGAAGAGCTTTGCCCATTCAGACTTGGGAATCTCATCCCATCTAAAACAACAAAAGGAATGCTTAACTGACAATGCCTTGATTAAGCATTTGAACGCCTAAATATAATCCATAAACAGCCAGAGATTCAATGTATAGCACTGAACCATAATTCGCTGAGGAAGGCGCTGCTCTTACCAGAGGAAGGACTGCAGCTGAGGGGTGAAGAGGGAGCAAATGTGAAGTCGGGCTGCACTGGGAGGCTGCTGTTGTGAGGAGGAGACCCGAATGCTGGGAAATGCTGAAGGTTCTCCAACCCAATATGCACCTCAGGATATTTACCCTGCTTCTTGTTCTCTTCAATTTCAATTCGCTTCTCTCTGCGCTTCTCATCCCTTACTTTCTTCTGCCTCAGGCGCTTTCTCTTCTCCAAGTCATCTGCAAATGTGTCCAGAGTTTCTTTGGACAGGATTGGCGGCTGTAGGGCTAACTCACAGATGCTGAACTCGCACGTGAGTGGCAGGTGAGCCAGATAGCGATGCCGACGACGGATCTCCTCAGTGACTGTGTGTCCCACTATCTCCACCACTGTGGCAGTGATGGAGTCCGGACTGGCCTCCAGGCTGCCGTATTCACGCAACAGACAGCGTACATTCACAGGATGCAGGAACATCTGCTGGCAGTCATCAG

Function

symbol description
rnf10 Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of myelination and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Orthologous to human RNF10 (ring finger protein 10).

NR:

description
PREDICTED: RING finger protein 10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82286 True 2081 lncRNA 0.43 7 14365232 14368488

Neighbor

gene id symbol gene type direction distance location
idua idua coding upstream 118927 14234278 ~ 14246305 (+)
LOC120560659 LOC103369208,LOC102291259,LOC102215744,LOC101478239 coding upstream 131844 14212239 ~ 14233388 (+)
LOC120560074 NA coding upstream 153528 14198755 ~ 14211704 (+)
piwil2 piwil2 coding upstream 176315 14147570 ~ 14188917 (+)
atad1a atad1,LOC101479261,LOC100705680,LOC104934768,LOC102292399,LOC106527948 coding upstream 364961 13986231 ~ 14000271 (+)
unc119.1 unc119b coding downstream 8766 14377254 ~ 14383227 (+)
msi1b msi1,LOC100704609 coding downstream 36652 14405140 ~ 14429432 (+)
prkab1b LOC103353610,LOC101165238 coding downstream 69337 14437825 ~ 14445152 (+)
pla2g1b NA coding downstream 82363 14450851 ~ 14454246 (+)
cfap77 NA coding downstream 180191 14548679 ~ 14555480 (+)
G61391 NA non-coding upstream 35485 14328180 ~ 14329747 (+)
G61389 crybb3,LOC103469711 non-coding upstream 37699 14325390 ~ 14327533 (+)
G61376 NA non-coding upstream 102363 14262155 ~ 14262869 (+)
G61332 NA non-coding upstream 304061 14060922 ~ 14061171 (+)
LOC120561318 NA non-coding upstream 459892 13904693 ~ 13905340 (+)
G61448 NA non-coding downstream 32743 14401231 ~ 14401881 (+)
G61449 NA non-coding downstream 33567 14402055 ~ 14402762 (+)
G61450 NA non-coding downstream 35145 14403633 ~ 14404172 (+)
LOC120561034 NA non-coding downstream 96515 14465003 ~ 14465725 (+)
LOC120561032 NA non-coding downstream 100709 14469197 ~ 14472189 (+)
G61390 crybb2,LOC108234953,LOC100703162 other upstream 45726 14317539 ~ 14319506 (+)
G61383 NA other upstream 81361 14283417 ~ 14283871 (+)
LOC120560400 tmem150a,LOC106585116 other upstream 83461 14252256 ~ 14281771 (+)
G61338 htr7,LOC104934772,LOC101065316 other upstream 223182 14141442 ~ 14142050 (+)
G61337 LOC100705941,LOC102292089,LOC108234925,LOC106529513,LOC104934772,LOC103365846 other upstream 255686 14107483 ~ 14109546 (+)
c6h12orf43 NA other downstream 20983 14389471 ~ 14392583 (+)
LOC120560925 NA other downstream 62842 14431330 ~ 14434597 (+)
G61514 surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 331037 14699525 ~ 14794602 (+)
LOC120561401 NA other downstream 386962 14755450 ~ 14762549 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 406025 14774513 ~ 14795943 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018558 NA coding CM030135.1 CM030135.1 14361036 ~ 14367961 (+)