LOC120560925


Basic Information

Item Value
gene id LOC120560925
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14431330 ~ 14434597 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82322
CTTTAATTTTgttccccttcctcttcctgtcaCTGTTTCTAAGTAAGAGCAGCATTGACTCTTGACGTCAGTCTGGCCTGAGTCTCGAGTGTGCTCAGACCTCCCAGCAGCAGCCTGCCTCTGAGTCCCTGtcatctctccctctgctggctCATTTCTCTCTTCCATCATCACTGCTCCACTGCCTCCCCTCCCTCGCCTCCACCTCCCCTCTCCCAGTGTCTCAGCCCTGTGCCTCGCCTCTCTGCTTTGACTGTCTCGGTGGGgcaggtggtggtgggggggacgGTAGCCGGTCATGAACACCAAGTCCTTGCTGGACGGGAGCGCAGACCACCTGAAATACGGGGAGGCTCAGGAGATTCCCCCTCTGAGGAACTATCTCTGTCTCACCATGTTCACCTGTTTCTGCCCTGCATGGCCCATCAATATTGTGGCGCTGGTTTTCTCTGTGCTGGCCCAAAAGAGCTATGACGAAGAGGATTATGAAGGCTCCAAGCGGCTGGGTCGGAAAGCTCTCCACCTGGGGATTGTTTCTTTTGTCGTTGGCCTTGTGATCGTCACTGCGTACACCGCTGTGCACTTTACCACGCGTGTAGTGTGACCTcttgatgaggaagaggaggtggaggtggagaagaGGTGATGGAGAGATCAGCTCTGCCTGGCTTCTGTCATCCACAGCTCTGCAGGAGTGATGATTTCGCAATAGGCTAAAACTTTTGACAGTTGTTGTAATTACAAAGTATTATAAAAAAGAATGATTATGGTGgacacagtggtggaatgtaactaagtacatttactcaagtactgtacttaagtattataTTTGATGTACtcgtactttacttgagtctttttttctctccactttCTACTtgtactccgctacatttcagagagaaatgttgtactttttactccactacattcatctgacagctataGTTATTTTACAAATGAAGATGTTTGCACACctaacacatgtagtttataaaatatgtttatcAATTTAACtacacaacaatataacggcctacaagtccagctgaaatgcattaagcacttttacttttaatactttaagtacattttcctgatgatacttacatacttttacttaaaggtgcagtaggtaagacttataaaactaactttttgtcatatttgctgaaactgaccctatgttccagtagaactacatgacgcaggtcatttaaaaaaatctggctcctctggcaccgcctacagcctgtagtgcgatttgcaaaaatccaccgctccctgttcagatgcaccaatcagggccagggaggggggggggtgggagtGTCTAAcagtgtgtcaatcactgctcatgcacacacattcattctctcttgtggggggaggggtttAGGAGACCGATTtcggctttagcagaaaggggggagggactgagaagttgtcggatgttcaaatttttgggctaagtcctggatcttcacaatcctacctacagcacctttaagtaggctaacattatcaatgcaggacttttacttataacagagtatttttacagtgtggtattagtactttaacttaagtaaaggctctgaatacttcttccaccactgattagGTATACCAGTACTCCCACTGATGAAACATGGGGCTTTTCTGTAATTAGGCCTATAACGGACTGTTTTACATTTCCATTATATCTTATTGTTTATTGTAACTATTGATAACTGATTCCTGATGAATTGTGATCTAACGCTGGCACATTGAAATATTGCCCTGCCTTAACTGTTGtgggaataaaaatgtaaaataaaacgttttacacaaaacaaaacaatgtctgGTAAATATGATTAAAAAAGCAGTTACATTTGATGGTTAGATATTAATGACACATGCTTATATTTCCTGAGGTTTAATGAAAACTAGTTCAGAAATGCAGATTTTATAATTTGAGCTGCCAAAATGTTTATCTCTAACAGTGACACAAGAAATGCCCCTTCAATTGTGATATTCAAAGCCAGGCTCAAAACTCACCTTTTTACATTGGCCTTCCCGGCATTTTAATTGTCTTATCCTGCTAGGTTTGTAATTAAGTATTTGTCTATTGAT
>XM_039803816.1
CTCTTGACGTCAGTCTGGCCTGAGTCTCGAGTGTGCTCAGACCTCCCAGCAGCAGCCTGCCTCTGAGTCCCTGtcatctctccctctgctggctCATTTCTCTCTTCCATCATCACTGCTCCACTGCCTCCCCTCCCTCGCCTCCACCTCCCCTCTCCCAGTGTCTCAGCCCTGTGCCTCGCCTCTCTGCTTTGACTGTCTCGGTGGGgcaggtggtggtgggggggacgGTAGCCGGTCATGAACACCAAGTCCTTGCTGGACGGGAGCGCAGACCACCTGAAATACGGGGAGGCTCAGGAGATTCCCCCTCTGAGGAACTATCTCTGTCTCACCATGTTCACCTGTTTCTGCCCTGCATGGCCCATCAATATTGTGGCGCTGGTTTTCTCTGTGCTGGCCCAAAAGAGCTATGACGAAGAGGATTATGAAGGCTCCAAGCGGCTGGGTCGGAAAGCTCTCCACCTGGGGATTGTTTCTTTTGTCGTTGGCCTTGTGATCGTCACTGCGTACACCGCTGTGCACTTTACCACGCGTGTAGTGTGACCTcttgatgaggaagaggaggtggaggtggagaagaGGTGATGGAGAGATCAGCTCTGCCTGGCTTCTGTCATCCACAGCTCTGCAGGAGTGATGATTTCGCAATAGGCTAAAACTTTTGACAGTTGTTGTAATTACAAAGTATTATAAAAAAGAATGATTATGGTGgacacagtggtggaatgtaactaagtacatttactcaagtactgtacttaag

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82322 True 2121 TUCP 0.43 3 14431330 14434597
XM_039803816.1 False 766 mRNA 0.53 3 14431388 14433300

Neighbor

gene id symbol gene type direction distance location
msi1b msi1,LOC100704609 coding upstream 1898 14405140 ~ 14429432 (+)
unc119.1 unc119b coding upstream 48103 14377254 ~ 14383227 (+)
idua idua coding upstream 185025 14234278 ~ 14246305 (+)
LOC120560659 LOC103369208,LOC102291259,LOC102215744,LOC101478239 coding upstream 197942 14212239 ~ 14233388 (+)
LOC120560074 NA coding upstream 219626 14198755 ~ 14211704 (+)
prkab1b LOC103353610,LOC101165238 coding downstream 3228 14437825 ~ 14445152 (+)
pla2g1b NA coding downstream 16254 14450851 ~ 14454246 (+)
cfap77 NA coding downstream 114082 14548679 ~ 14555480 (+)
barhl1a NA coding downstream 121792 14556389 ~ 14563699 (+)
LOC120560602 LOC108248102,LOC106527805,LOC101064502,LOC101174676 coding downstream 192024 14626621 ~ 14642212 (+)
G61450 NA non-coding upstream 27158 14403633 ~ 14404172 (+)
G61449 NA non-coding upstream 28568 14402055 ~ 14402762 (+)
G61448 NA non-coding upstream 29449 14401231 ~ 14401881 (+)
G61431 rnf10,LOC102784202 non-coding upstream 62842 14365232 ~ 14368488 (+)
G61391 NA non-coding upstream 101583 14328180 ~ 14329747 (+)
LOC120561034 NA non-coding downstream 30406 14465003 ~ 14465725 (+)
LOC120561032 NA non-coding downstream 34600 14469197 ~ 14472189 (+)
LOC120560938 NA non-coding downstream 63184 14497781 ~ 14499057 (+)
G61468 NA non-coding downstream 64583 14499180 ~ 14499434 (+)
G61513 NA non-coding downstream 241540 14676137 ~ 14677372 (+)
c6h12orf43 NA other upstream 38747 14389471 ~ 14392583 (+)
G61390 crybb2,LOC108234953,LOC100703162 other upstream 111824 14317539 ~ 14319506 (+)
G61383 NA other upstream 147459 14283417 ~ 14283871 (+)
LOC120560400 tmem150a,LOC106585116 other upstream 149559 14252256 ~ 14281771 (+)
G61338 htr7,LOC104934772,LOC101065316 other upstream 289280 14141442 ~ 14142050 (+)
G61514 surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 264928 14699525 ~ 14794602 (+)
LOC120561401 NA other downstream 320853 14755450 ~ 14762549 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 339916 14774513 ~ 14795943 (+)
cntrl NA other downstream 493776 14928373 ~ 14979797 (+)
G61535 LOC103368073 other downstream 644277 15078874 ~ 15083448 (+)

Expression


Co-expression Network