LOC120561401


Basic Information

Item Value
gene id LOC120561401
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14755450 ~ 14762549 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82404
CACCCACCTCCACCGCTGCTCAACACATCGCCGACCAACCAGCTGACCTTCAGTCTCCACTGGTTTGATTGGCCGAAGCACGTGGAGCAACAGGTGTTTCAccaactgaagaagaagaagaggtaaAGGAAGGAACCAACAAAGGAGAGCACTGAAAGAAGCCAatctaaacaaaaaaacacccctAGGAACTTCAGTACCTTGAGGAGGATGTCTTCATCTCAGAAAAGATCTGGACACAAACCATCTGGACTTAAACGTTTCTGTTTGTGGCTCCACCGCTGCTCCtcacccccccctcctccccctcctcttcctctccctgtcAGCTGTGGCGTCCCCGACTCTCCGCCGGTGTCTTGtcgtctccccctgctggttgtcctGCTGctctgcagtctgctgctgatgctgctgatTCTGCTGTGGAATTACCactgtttgttcatctcccaCATCTGCTCCCAACagggggaggaaggggaggaggggggacgGAGGGCCATGGCCCCCTGGCGGTGACAGTGGCACCACCCACCTCCTGAAACCAGTCCTGCAGAAACCACAAATAAAGATGATTTTGGCCGGGGGTTAGTTCCGATTTTAGAATATTTTGCTTCATCTACAAACATTTCTTATCGTAAACAAGAACTACAGGATATTAAAAGAGGTGAAAATTGGGTTGTTCTCAAGACTGCTCACTGCTGCAATGTTAGTATTTCACTTCTAGTTGTTGTGAGATTGAAAAGACTTTTAGCCCAAAAatctggatcctacatttccaaTGATGCAACTGGACAGCGTCTTTCAGTAGAGCCTCATAGACTGACGACATCATTATGACATCATCTGCGTTATCAGAGACAGTGTAAAAATGTGTGCAATTCTCCTTTAACATTGTTAGAATTTACCATAATAAAAGCTCCCTGA
>TU82405
CACCCACCTCCACCGCTGCTCAACACATCGCCGACCAACCAGCTGACCTTCAGTCTCCACTGGTTTGATTGGCCGAAGCACGTGGAGCAACAGGTGTTTCAccaactgaagaagaagaagaggtaaAGGAAGGAACCAACAAAGGAGAGCACTGAAAGAAGCCAatctaaacaaaaaaacacccctAGGAACTTCAGTACCTTGAGGAGGATGTCTTCATCTCAGAAAAGATCTGGACACAAACCATCTGGACTTAAACGTTTCTGTTTGTGGCTCCACCGCTGCTCCtcacccccccctcctccccctcctcttcctctccctgtcAGCTGTGGCGTCCCCGACTCTCCGCCGGTGTCTTGtcgtctccccctgctggttgtcctGCTGctctgcagtctgctgctgatgctgctgatTCTGCTGTGGAATTACCactgtttgttcatctcccaCATCTGCTCCCAACagggggaggaaggggaggaggggggacgGAGGGCCATGGCCCCCTGGCGGTGACAGTGGCACCACCCACCTCCTGAAACCAGTCCTGCAGAAACCACAAATAAAGATGATTTTGGCCGGGGGTTAGTTCCGATTTTAGAATATTTTGCTTCATCTACAAACATTTCTTATCGTAAACAAGAACTACAGGATATTAAAAGAGGTGAAAATTGGGTTGTTCTCAAGACTGCTCACTGCTGCAATGTTAGTATTTCACTTCTAGTTGTTGTGAGATTGAAAAGACTTTTAGCCCAAAAatctggatcctacatttccaaTGATGCAACTGGACAGCGTCTTTCAGTAGAGCCTCATAGACTGACGACATCATTATGACATCATCTGCGTTATCAGAGACAGTGTAAAAATGTGTGCAATTCTCCTTTAACATTGTTAGAATTTACCATAATAAAAGCTCCCTGATTGCTTCGCCTGTCTGCTGAACTCTTGTTTTATATTTTCCGAATAAAAGTTCTATTTGGG
>XR_005639594.1
GAAGGTTGGAGCAGGCAGCTGCAGctccgccccccccccaaaagacTGATAGAGGACAGGACGCCTCCATGCATTCACCCACCTCCACCGCTGCTCAACACATCGCCGACCAACCAGCTGACCTTCAGTCTCCACTGGTTTGATTGGCCGAAGCACGTGGAGCAACAGGTGTTTCAccaactgaagaagaagaagaggtaaAGGAAGGAACCAACAAAGGAGAGCACTGAAAGAAGCCAatctaaacaaaaaaacacccctAGGAACTTCAGTACCTTGAGGAGGATGTCTTCATCTCAGAAAAGATCTGGACACAAACCATCTGGACTTAAACGTTTCTGTTTGTGGCTCCACCGCTGCTCCtcacccccccctcctccccctcctcttcctctccctgtcAGCTGTGGCGTCCCCGACTCTCCGCCGGTGTCTTGtcgtctccccctgctggttgtcctGCTGctctgcagtctgctgctgatgctgctgatTCTGCTGTGGAATTACCactgtttgttcatctcccaCATCTGCTCCCAACagggggaggaaggggaggaggggggacgGAGGGCCATGGCCCCCTGGCGGTGACAGTGGCACCACCCACCTCCTGAAACCAGTCCTGCAGAAACCACAAATAAAGATGATTTTGGCCGGGGGTTAGTTCCGATTTTAGAATATTTTGCTTCATCTACAAACATTTCTTATCGTAAACAAGAACTACAGGATATTAAAAGAGGTGAAAATTGGGTTGTTCTCAAGACTGCTCACTGCTGCAATGTTAGTATTTCACTTCTAGTTGTTGTGAGATTGAAAAGACTTTTAGCCCAAAAatctggatcctacatttccaaTGATGCAACTGGACAGCGTCTTTCAGTAGAGCCTCATAGACTGACGACATCATTATGACATCATCTGCGTTATCAGAGACAGTGTAAAAATGTGTGCAATTCTCCTTTAACATTGTTAGAATTTACCATAATAAAAGCTCCCTGATTGCTT

Function

GO:

id name namespace
GO:0000255 allantoin metabolic process biological_process
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU82404 False 930 TUCP 0.48 3 14755525 14762489
TU82405 False 990 TUCP 0.47 3 14755525 14762549
XR_005639594.1 True 1011 lncRNA 0.49 3 14755450 14762495

Neighbor

gene id symbol gene type direction distance location
grin1b grin1,LOC101175170,LOC102209996,LOC108248095,LOC107386166,LOC101469542,LOC102312845 coding upstream 2050 14677671 ~ 14753400 (+)
LOC120561189 LOC102300215,LOC108165969 coding upstream 89185 14646727 ~ 14666265 (+)
LOC120560602 LOC108248102,LOC106527805,LOC101064502,LOC101174676 coding upstream 113238 14626621 ~ 14642212 (+)
barhl1a NA coding upstream 191751 14556389 ~ 14563699 (+)
cfap77 NA coding upstream 199970 14548679 ~ 14555480 (+)
kazald3 kazald1,LOC107097908 coding downstream 5167 14767716 ~ 14772152 (+)
LOC120560087 LOC103371518 coding downstream 79522 14842071 ~ 14867655 (+)
prdm12b LOC102306279,LOC102776562,LOC102208027,LOC101478941 coding downstream 116079 14878628 ~ 14886454 (+)
c5 NA coding downstream 129023 14891572 ~ 14924937 (+)
LOC120560530 NA coding downstream 217325 14979874 ~ 14981617 (+)
G61513 NA non-coding upstream 78078 14676137 ~ 14677372 (+)
G61468 NA non-coding upstream 256016 14499180 ~ 14499434 (+)
LOC120560938 NA non-coding upstream 256393 14497781 ~ 14499057 (+)
LOC120561032 NA non-coding upstream 283261 14469197 ~ 14472189 (+)
LOC120561034 NA non-coding upstream 289725 14465003 ~ 14465725 (+)
G61539 NA non-coding downstream 263892 15026441 ~ 15027400 (+)
G61540 NA non-coding downstream 265056 15027605 ~ 15027818 (+)
G61730 LOC102301232,LOC102776762,LOC101476977 non-coding downstream 383551 15146100 ~ 15152551 (+)
G61756 NA non-coding downstream 461565 15224114 ~ 15224465 (+)
G61754 NA non-coding downstream 461998 15224547 ~ 15224969 (+)
LOC120560925 NA other upstream 320853 14431330 ~ 14434597 (+)
c6h12orf43 NA other upstream 362867 14389471 ~ 14392583 (+)
G61390 crybb2,LOC108234953,LOC100703162 other upstream 435944 14317539 ~ 14319506 (+)
G61383 NA other upstream 471579 14283417 ~ 14283871 (+)
LOC120560400 tmem150a,LOC106585116 other upstream 473679 14252256 ~ 14281771 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 11964 14774513 ~ 14795943 (+)
cntrl NA other downstream 165824 14928373 ~ 14979797 (+)
G61535 LOC103368073 other downstream 316325 15078874 ~ 15083448 (+)
nudt18 nudt18,LOC104957221 other downstream 456588 15219137 ~ 15224015 (+)
spinb spin1,LOC103373448,LOC108245887,LOC101477468,LOC100698355,LOC106527790 other downstream 487195 15249744 ~ 15352625 (+)

Expression


Co-expression Network